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LotjaGi1g1v0238900.1

Overview

Field Value
Gene ID LotjaGi1g1v0238900
Transcript ID LotjaGi1g1v0238900.1
Lotus japonicus genome version Gifu v1.2
Description Snurportin-1; TAIR: AT4G24880.1 snurportin-1 protein; Swiss-Prot: sp|Q68FP5|SPN1_RAT Snurportin-1; TrEMBL-Plants: tr|A0A1J7G9P8|A0A1J7G9P8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0238900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:56864929..56870800) extracted from Lotus japonicus Gifu genome v1.2.

GTTTCAAAAAGAACACCAACATTCTCACCAAAATAAAATAAACGAACACCAACATTCAAAACAACCACAAGGACGCGGCG AGAAAGTGAAACACTTCCATGGCACCACACGATCTCCGCCGCCCGTTCAAGCGACCGGCGATCTCCGACCAAGAGAGGCG CAGGCAGCACTCTCTCCTCCGCCAGGCACAGAATCGCCTCGACGCTCAGCGCCACGCTCGCTTCCTTGCCTCCACCGTCT TCTCCCTCTCATCCCAAACCCCCGATTCCTCCGAAATCGAACTCGACCTCGTACCCGAACCCGAAAACCAACCAGAGCCT TCACACAAAGAACTCGACGTCCTCGAAGCCTCGAAGCTGAAGGGCTCAGAAGCTCGCAAATGGTTCTCCAAACAGCTCAT GCACCCTGAATGGATGATCGATATCCCTGACTCGCTCTCACCTAACTGGTTCGCTCTCTTACCCTCAATTCAATTCACTC CTTCACACACAACGTTCTTACCCACTTCACTTCACTTCACTTCACTTCACTCAAATTTCAACATTTTTTTGGTTTGCATT TTCAGGTTCGTGTTTGCAAGGCCTTCTGGGAAACGCTGTTTTGTTGTTTCCTGCAATGGAACAACGATAAGCCGGTTGAG GAACGGTTCGGTGCTGCACCGTTTCCCTTCCGCGTTACCAAGCGGCGCAAGGAAGAAGGACTCCGGTTCTTCTCAGTCTT ACTCTATACTAGACTGCATCTTTCACGAGGTTTGGTTTCCCACTACTTCTGATTCAATGTCGTGTGTTTTATTAGAACCC GGTTTTACTAGAGCTTATCTACTAGAAAATGCACAAATAAGCTCCAATACTCCGATAAGTGCGTTTTGGTTTGCATCCAA AGATAATGTTGGTGTTTTGTTTGGTGTTGCAGTTGGATCAAACTTACTATGTTATTGACATGGTTTGCTGGCGTGACTAC TCACTTTACGATTGCACTGCGGAGTTCAGGTTCTTTTGGTTGAACTCCAAGGTTGCCGAGAGTGGTGCTTGTGACCCTCC TTCGCATTATCACAAGTATAGGTTCAGTTTGGTTCCCGTCTATAGTTGTGACAGGGATGGTCTTTATGCGGCTTATACCG CGCCTGTGCCTTATGTCAAAGACGGTCTTCTCTTTTATAACAAGTAATGACTCTTTTCTTTCATTCCAGGATCTCTTAAT GCTAGCCATTTTGCCTGCCATTTTTTGTTGTTTTGCACTTTTTTTTTAAAAATTATAAGTAGCCTTTGGTTTGAAACCAA AGAGGATATAGCAGAACATATGGATGGTGTAATATTCATATTAAGAAAAGGGTATATTTTGGTTCAACTAGACAGGATAA AACCAAAGAGAAAAAAACTAAATAGATTAGATTGTTTCGCTATGTTTTGTTTGTATGCCAGATGCTATCATCATCTTGAT ATTTCAGGAAGAATGTGTAATAAGCAGATAATGTGAAGCCTTGGTCTTTATATTCCATCTTCCTTTTATGTCTAATGAAG CTTTCAGACATTTAATTTGGTTGCTGTTTGCACTTGTTAGGCTCTTTTGGATTTGATATCATTTTTATTTTTTAGGCATG CACACTACCAAGCAGGAATAACGCCTTTAGTATTAGTTTGGAAGGATGAGAACTGCAGTCAATATGTTATGGACACGGAC AGTAAAGGACAGGTTCCGAACCAGCAGCAGGTGTTCTCCCTTGCTTCCCTTGCATCTTCTCATTACTTGGCTTTCCATGC ATTTTCTTTACTGCATTGATATTCCAATCATTTGCTTTTTGGATTTCTAGCCCATGTGATTGGATAGTGGATTTATGGAC CATTGATACCCGTTGTAAGGCACTCTATGGGTTAATTTTTTTCTTGCTTGATATTCATTGCAATGGTCTATTCTCTTGAA GCACACAACTCCTAAGGCAATACCAATGCAAACATATGCTTGCCCTGATATAGTTTTGCTTCCTACAGAGATACCGTGTT TGAACATGTGTCCCTGTAAACACTTATTTTGGAGATATCTTATTTGTTAAACTAGATCCTGTAACTACAGAACTAGGAGA GAGAACCTCACCCTCATATGTCATATCAGACTCTGGCTGTCTTCTAATTTTCGGTTGTTTAAAGTGGCATCTTTTCCCTC TTCCCTTCATTTTAGAATGGAAAGTTATACATTATGAACATGTAGTGCTAAGCATCTGGATATTATCCCACTTTTAACTA AGTGGCACTGAAGCTCTGCAGTAAATTTGTAACGGAAATAGTTTGATGAAAATTAACAAATTCATTATTAAAGGAAAGGC CTTAAAAATAAAAAAAGGGCATAGTTACATTCATTATTATAACTATAATAATTTATGTTTGATATCATTTACAAGTTTTC AGAGGTATAGACGGAGAAATGTCTGGTGTGCTGATGTTGCATGTAGTTTGGTTAAATAGGAGATGATGCTAGATTATATG ATTGTTTGTGAATTTGGATTAGCATAACTTGGGGAGGCAGCTTCCCCTGATATTCTTTTTAAAGATTATTTCCTAAGAAA GTTGTTTTCAGACATGCTAGATTCTCAAGGCACAGCTTTTAATAGTATAATATAGGTCACATAGTTAATGAAACATTGCA CTTCTATTTGGGAATGGTTTGTGGTAAGTATTTTTTTAGAAACCATGTAAAACTTGAGGCTGAGCCTTGGTGCAATGGTA AGAATGTTAGACCACATACAAATGACCATCCCCAAATCCCCCTTTCAATGGAGAATGCATTGTGGACTTGTGTGCCCTTT AGGCCTTTATAGATATGAAAGTTATTACAACTTTAAAGAGGTCTAATGTCTCCAAATCCACTCATTTTTCTTAAATATGT TTTTCTGGCTTTCCAAACCAGGTGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACCACCTCTGATGATCCTCCAGTGGT ATTCGGCTGTTTAGATGGAAGCTTTACACAGCAGGTTTGTTCGAAAGGGATTTTTATATAATAGTAAATTGGTATTCGAT GCTTAATGTAGTTATGAGGCTTAAGTTCAAAAAAAAAGTTATGAGGCTTGTCCACTTAGAACTTTACATGCACTGAACTA ATACAGATGGTTTACTGAAAAGTGACAATTCTCGATGGGGTAATATGGAAAACTCTGACATGAAATGTAGCAATTAATAA GTTTGTGTCTTAGGCATCAGACTCATTTTGCTATTTATCTTTTACAAAGTAATTCTATTGTAACTTTCTTGAATTTGCAG TCAGAATTGCTCTCAGGATGTCTACTACGGTTTGCAATTGGAGAGGCAGGATTGGTTCTAGTGGATGGGAAGCTTGAGAA AGCTGACCTAAATTATCTTGGCAAGGTCAATCGAGCTCGCGCCTCAGCTGATAGTTTCTCTAAGGTTGTGGGCAAGTATT GTAGTAAACCTTCTAAAACTATCTGCAACCTCTTGTTTTGTTTAAAGATTAACATTTTACTCTGGATGAATAGCAATTCA AAATGGAAAGTTTAACAATGTTGATGTAAATCATTTTAAGGCAATATAAATGACTAAACTAACAGTTTGGTTCTCCAAAG ATTCACTTGACGTTAATAAAATGATTTTAACATAAATTGGATCTTCTGAAGATTTAAATTAACATCAGAATGATCCTGAT TTTGATGTACGTCAGCTTAGCTTGATGACTGGTGTTTCTTTATGCTGCTTTTAATATATAGAAGGTTTATTTGATGTCAA AATCTCTGAAGGACCAGATTGATATGGTTAGTTTGACTGGGATTAGGTGGACTATTTGACTGTTAGGGCAAAGTCATATT CATTTTAATAATTAGTAATTATTGATTAGTGATGACTGTTGCTGCAGGGTTTTGGGTTTTGGTATTTTGAGAAAAAATTT CGATTAAGGTTTCAGATAAGTTTCTAATCTTTATACCATTAAAATGGATGGGCACTTTCCTTAATAAAGATCAATTAACA TGTATCTTAGTTTTAGATGCTTTGTGGTTATATTTGGTTTACCCTCTTTCTTCTGCTTTCATCATTATCACTTATAATTG TAATATTTCACAAGTGCCTTGTGATTTTTTCATTAATATTTTACATTTTTCAACCTGTTGGCACTACTTTGTCATGATTC TTTTACATTATGGGTTATGAAAACTGCTTCATAATGGTAATTCGTGAGAAGTCTTGTTAAGCTTTCTCATTTATCTACAA GAGAAAAGTATCATTTTCCTGAGAAATTTTCCTTATTGTTTCCTTGTGCCTTTTGGTTATATCCATATGAAACTGACACC AACACTGCAAATGCTTCAGGGGTTGAATGGGTTGCTGGAGATAGTAGGAGAATTTTGTTATTGAATGTTTGTGCTGTTTC TATTCTGATTTACTGTTGTCTAAAGAAACCTTAATTATCAATTGTCATCATTAATTTGTCAAATGCAGTACATCAGAGGT TCACGATCACTAGTTTGATCATTAATCTTTGTTTTCAGTGGTTTTATTGTAATCAAGCTGCAAATTTGCACTTGCAGGTT ATGTTCCAATATAGCGTTCGACACTCCCCCCTCAGAATTGACGACCTGTTGGGATCTGTCAGCTCTCCAGTCGATGAAGA AAGCAAACCTTGCGATATTGAGATGGATGGTTGATAAGGAATACAACACTTCGGAATTCAAATGCCAGTCTCTATGCCCT GTGTCTGTGTGAAATGTTGGAAATTTTCACCTTAATTTTTGGTTGACTATGATGCTATGTCCCTGAAGGCTTCTGAAAGT CATATCAAGGGTTCTCAAAATTGCTGGCTACCAGTCTACCTCAAGTGTTGAGATACTCAGACAGACGGATTAGTCGGAGT AGGAGGTGAGCATATGCGTGTTGTCCATCTTGTGCCTGGTTTATTTGATGCTGGTAGCTTGATAGAGTTTACAATTGCCA GCAATAATGTATTGCAGAGTGTAGCCATCTTGTGCCTGGGTTATTTGATGCTGGTAGCTTGATAGAGTTTACAATTGCCA GCAATAATGTATTGCAGAGTGTAGCATAATGATTGAATTCATCTCATATCCGAAGTTATCGGCCAGGTTTCCATTATTTT TCACTACTAAGCAATGGTAACTTGTATTTTTAAGAATTCTTTGGAATATTTCTAACTTGTAATGTTCAATTATATTTTAA ATTTGTTGTTCCAATATAAGTGATCTTTCAGTGATTGGATGAATAATAATAGGCTAAAAAGCATTTTTGGCCCCTGATGT TTCAAGTTTGTGCAAATTCTGCCTCTACTCTATTTTTGTCGACGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCT ACCCCTCCGTTAGTCAGGCTTTCTCAAGAGAGGTTCCTGAGTGGATTGAAGATATGAGGATGAGTATATGAAGTTGATGA CGATCAAGGAAATGATATAAATTAAATTTGCTTGATGTGTATATCAATTATGTATGTAACTGAACTGGTGGAATGCATGT TTTGTTACTTACAGGTCTTGAGTTTGAATCTCCTGTGCCCTCTTTTTCCAATTTCACTTGTAATTTCCACATGGTAGGTC TAAAAAATATTTTAAAAAAAGCCAAATCAGCTCATTCCATTAGTTTTTTAACTTCTGACTGACATAGGGGTAGATGGTGC ACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAGGGGCAAAATTTGCACAAACTTAAAACATCAGGG GCCAAAAGTGTTTTTTAGCCATAATAATATTGTATTGACTTCACAATAACTAAAGCTAACTTATGAAACATGTATGTCTT CATTCTAATCAAGAAAATTGTTTTAATGTTTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0238900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACCACACGATCTCCGCCGCCCGTTCAAGCGACCGGCGATCTCCGACCAAGAGAGGCGCAGGCAGCACTCTCTCCT CCGCCAGGCACAGAATCGCCTCGACGCTCAGCGCCACGCTCGCTTCCTTGCCTCCACCGTCTTCTCCCTCTCATCCCAAA CCCCCGATTCCTCCGAAATCGAACTCGACCTCGTACCCGAACCCGAAAACCAACCAGAGCCTTCACACAAAGAACTCGAC GTCCTCGAAGCCTCGAAGCTGAAGGGCTCAGAAGCTCGCAAATGGTTCTCCAAACAGCTCATGCACCCTGAATGGATGAT CGATATCCCTGACTCGCTCTCACCTAACTGGTTCGTGTTTGCAAGGCCTTCTGGGAAACGCTGTTTTGTTGTTTCCTGCA ATGGAACAACGATAAGCCGGTTGAGGAACGGTTCGGTGCTGCACCGTTTCCCTTCCGCGTTACCAAGCGGCGCAAGGAAG AAGGACTCCGGTTCTTCTCAGTCTTACTCTATACTAGACTGCATCTTTCACGAGTTGGATCAAACTTACTATGTTATTGA CATGGTTTGCTGGCGTGACTACTCACTTTACGATTGCACTGCGGAGTTCAGGTTCTTTTGGTTGAACTCCAAGGTTGCCG AGAGTGGTGCTTGTGACCCTCCTTCGCATTATCACAAGTATAGGTTCAGTTTGGTTCCCGTCTATAGTTGTGACAGGGAT GGTCTTTATGCGGCTTATACCGCGCCTGTGCCTTATGTCAAAGACGGTCTTCTCTTTTATAACAAGCATGCACACTACCA AGCAGGAATAACGCCTTTAGTATTAGTTTGGAAGGATGAGAACTGCAGTCAATATGTTATGGACACGGACAGTAAAGGAC AGGTTCCGAACCAGCAGCAGGTGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACCACCTCTGATGATCCTCCAGTGGTA TTCGGCTGTTTAGATGGAAGCTTTACACAGCAGTCAGAATTGCTCTCAGGATGTCTACTACGGTTTGCAATTGGAGAGGC AGGATTGGTTCTAGTGGATGGGAAGCTTGAGAAAGCTGACCTAAATTATCTTGGCAAGGTCAATCGAGCTCGCGCCTCAG CTGATAGTTTCTCTAAGGTTATGTTCCAATATAGCGTTCGACACTCCCCCCTCAGAATTGACGACCTGTTGGGATCTGTC AGCTCTCCAGTCGATGAAGAAAGCAAACCTTGCGATATTGAGATGGATGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0238900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPHDLRRPFKRPAISDQERRRQHSLLRQAQNRLDAQRHARFLASTVFSLSSQTPDSSEIELDLVPEPENQPEPSHKELD VLEASKLKGSEARKWFSKQLMHPEWMIDIPDSLSPNWFVFARPSGKRCFVVSCNGTTISRLRNGSVLHRFPSALPSGARK KDSGSSQSYSILDCIFHELDQTYYVIDMVCWRDYSLYDCTAEFRFFWLNSKVAESGACDPPSHYHKYRFSLVPVYSCDRD GLYAAYTAPVPYVKDGLLFYNKHAHYQAGITPLVLVWKDENCSQYVMDTDSKGQVPNQQQVVLELQEDGKLTTSDDPPVV FGCLDGSFTQQSELLSGCLLRFAIGEAGLVLVDGKLEKADLNYLGKVNRARASADSFSKVMFQYSVRHSPLRIDDLLGSV SSPVDEESKPCDIEMDG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 - –
PANTHER
PTHR13403
1 416 416 1.7E-155
IPR017336
Gene3D
G3DSA:3.30.470.30
3 304 302 1.8E-87 –
CDD
cd09232
95 280 186 6.54074E-92 –
SUPERFAMILY
SSF56091
96 278 183 1.44E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0061015
Biological process SnRNA import into nucleus The directed movement of snRNA, small nuclear ribonucleic acid into the nucleus.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0238900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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