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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0239100 |
Transcript ID | LotjaGi1g1v0239100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein; TAIR: AT4G08980.1 F-BOX WITH WD-40 2; Swiss-Prot: sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2; TrEMBL-Plants: tr|V7ARI4|V7ARI4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0239100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:56899466..56900940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGAAACTTGTGATTTTCGAAGTTGGGATGAGTTGATTCCTGATGCCCTTGGGGTGATATTCACCAATCTCTCTCT CCAAGAAAGAGTGACAGTGATCCCTAGGGTTTGTAAATCATGGGCTAAAGCAGTGACTGAACCTTCTTGCTGGCAAGAGA TAGACATTAAGGAGTGGAACCGCTTTCAACCTGAGCAACTTGACCAGATGCTTGAGATGCTCATCACAAGAAGTCGTGGA TCGCTCCGCAGTCTCAGTGTTTCTGGTCTCCAATCTGAGAGGATGTTCACTTTCATTGCTGAAAAGTAAGCAGAACTGCA CTGTTCTAATTAACTTGAGTGCTTGACCAATTGCAATTGCAATGGAGTTTGCTAGAGTTTAGATGAAATCTTGTGGATAA ATATAATTTGCTGCTAACTGCTAAAATGTCTTACAATTGGATATAAATTTGGCACATTCTTTTATTGTTTCTGTGCTGCT CGTTTGGATTTGGATTTCCTACATTCAAGGGATTCCTGCATTCACACGTTCAAGCATTTCGAGCCCTCTAATCAAGATCT GATAATTCACATTTAAAGTTGTGATATTGACAGCTAGAAATGCTTGAATGTGTGAATGCAGGATTCCCCTGAAGTGAATT TAAATCCGGCAGGTTCACATTAAAATTAGATAGATGGTGTTTGTTTAGTTAAGTTTATACCCTCATTGTATATATTTTGC AGTAGAAGATAATTAAGTTGATACCCACATGATGGTTATTTTAGCTTTGAATTCTGTTAGTAATCTTTCTTATACTAGTC TCCTTTTACGCTTTTGCAAGTGCTGGCTCCCTCCAGACACTGCGGTTGCCAAGGAGCAGCATGAGTGATTCAATTGTAGA TCAGATTGCTGGAAGGCTTTCCATGATTTCTTTCTTGGATGTGAGCTACTGCATTAAAATCGGTGCCTCTGCGCTCGAGA CGATAGGCAAGAACTGCAAACTGCTGGAAGTGTTGTGCCGGAACATGCATCCGTTGGACACCGCAGGCAAGCCGTTGCAA GATGATGAAGCATATGCAATTGCCTCCACGATGCCTAAGCTCAAGCACCTTGAAATGGCTTATCATCAAATCAGCACTTC AGGTGCTCTTCAAATACTTTCAAGCTGTCCTAAGCTTGAGTTTTTCGATCAGAGAGGGTGTTGGGGTGTCCATCTCGACG ATGATGTGTTTCTGAAGCAGAATTTTCCAAAGCTGAAGGTTTTAGGGCCTTTTGTTTTTGACGCTCATGGGATTGATGCA TGGGATGATGATTGTTCAGATGTATCAGATGCTTCTGAGTGGGACTTTGTGGATGGTGGTATGGGTGAGTACTATGTTGA TGATAGTGATAGTTATGATGGGATGTGGGATGAAGAAGGAAGGATAGATGAGCTTCAGTTTGGGTTTTATGAAGGGATAG AAGATGCAGCAATGTATTGGCCTCCATCTCCATAA
CDS sequence (LotjaGi1g1v0239100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAACTTGTGATTTTCGAAGTTGGGATGAGTTGATTCCTGATGCCCTTGGGGTGATATTCACCAATCTCTCTCT CCAAGAAAGAGTGACAGTGATCCCTAGGGTTTGTAAATCATGGGCTAAAGCAGTGACTGAACCTTCTTGCTGGCAAGAGA TAGACATTAAGGAGTGGAACCGCTTTCAACCTGAGCAACTTGACCAGATGCTTGAGATGCTCATCACAAGAAGTCGTGGA TCGCTCCGCAGTCTCAGTGTTTCTGGTCTCCAATCTGAGAGGATGTTCACTTTCATTGCTGAAAATGCTGGCTCCCTCCA GACACTGCGGTTGCCAAGGAGCAGCATGAGTGATTCAATTGTAGATCAGATTGCTGGAAGGCTTTCCATGATTTCTTTCT TGGATGTGAGCTACTGCATTAAAATCGGTGCCTCTGCGCTCGAGACGATAGGCAAGAACTGCAAACTGCTGGAAGTGTTG TGCCGGAACATGCATCCGTTGGACACCGCAGGCAAGCCGTTGCAAGATGATGAAGCATATGCAATTGCCTCCACGATGCC TAAGCTCAAGCACCTTGAAATGGCTTATCATCAAATCAGCACTTCAGGTGCTCTTCAAATACTTTCAAGCTGTCCTAAGC TTGAGTTTTTCGATCAGAGAGGGTGTTGGGGTGTCCATCTCGACGATGATGTGTTTCTGAAGCAGAATTTTCCAAAGCTG AAGGTTTTAGGGCCTTTTGTTTTTGACGCTCATGGGATTGATGCATGGGATGATGATTGTTCAGATGTATCAGATGCTTC TGAGTGGGACTTTGTGGATGGTGGTATGGGTGAGTACTATGTTGATGATAGTGATAGTTATGATGGGATGTGGGATGAAG AAGGAAGGATAGATGAGCTTCAGTTTGGGTTTTATGAAGGGATAGAAGATGCAGCAATGTATTGGCCTCCATCTCCATAA
Protein sequence (LotjaGi1g1v0239100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETCDFRSWDELIPDALGVIFTNLSLQERVTVIPRVCKSWAKAVTEPSCWQEIDIKEWNRFQPEQLDQMLEMLITRSRG SLRSLSVSGLQSERMFTFIAENAGSLQTLRLPRSSMSDSIVDQIAGRLSMISFLDVSYCIKIGASALETIGKNCKLLEVL CRNMHPLDTAGKPLQDDEAYAIASTMPKLKHLEMAYHQISTSGALQILSSCPKLEFFDQRGCWGVHLDDDVFLKQNFPKL KVLGPFVFDAHGIDAWDDDCSDVSDASEWDFVDGGMGEYYVDDSDSYDGMWDEEGRIDELQFGFYEGIEDAAMYWPPSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 311 | 311 | 7.1E-106 | – | |
PANTHER | 1 | 311 | 311 | 7.1E-106 | – | |
Gene3D | 4 | 249 | 246 | 1.1E-32 | ||
SUPERFAMILY | 36 | 243 | 208 | 5.3E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0239100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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