Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0243500 |
| Transcript ID | LotjaGi1g1v0243500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ypt/Rab-GAP domain of gyp1p superfamily protein; TAIR: AT1G10650.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|A8PJJ2|GATC_BRUMA Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; TrEMBL-Plants: tr|G7K0Y6|G7K0Y6_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0243500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58431248..58432550) extracted from Lotus japonicus Gifu genome v1.2.
CGGCAGGGTATCTACACAAATTTTTATTTTTAGTTGATCATGAGTAGTGGCCCGTCCAACGTCGACCTTTTCACTGCCCA CAAGGACAGCCACCCTGCCGTCCCGAGTTACTTAACTCAAGGGACAAGTCCAATGCAAATTAACAAACACAAAGTCCACT CTCTATAATTATCACCACCATTCTCACATTATTTTCATCAACACAACCCAACACAACACAAACTTAATTTGAAGCTAGCT ATTATTCTTCACCATGAGAAAGGAATTAGCAAACAAGCAAATCAAGTTTAAGCACTACATTTTTACTCCTATCAGAATTC TCAAGAGAGCGAAGGAACTTCTATACTTGAAGGGAGTGAGGAATCGTAGTGCTTCAAGACCTGGTAATTATGGTCATGCA GCTTCTTCTATTCAGATTTCTTCACACCACCTTCAGGCTAAGAGCACCAATATCCTCAACAATACTATGCCAAGGGCAAC TGGTGACAAGAGACTCAACGAGCTTTCGAGAACGGTGCCGATCAAAAATGCGGAGAATCAAACAAAGCTTTTCACACATC TAGGGATGGAAACCAGGGGTGCTAATTATAATATTCAAAGGCAAAGGCAACGGAGTACTATGGGGTATAAATATAATAGA ATGAAAATGAGTTACCGCACTGAAGTGAGGAAGATGGAGACAGTTGATGAAGATAAACCTTGTTATTTTGAGGAAGATCG AAGTGATAATTCTAACTCTAATCTTTTGTATCTGTATCCAAGAACAAGGAACTATGGTGGTATTAACAGGCGCGTTATGT TTCATCAGTGAAGGGTGGGTGACAGGTTAATTGTTTTGTTATCACGCTGAAGGTTAATTTTCAGTTGCCAATTTTGTTCA TCTTTCGTTAAATCTGTTAAATACTTATATGTATTGTTATCAGTGAAAATGTAACGGTCGATCTTTATACTAACTTGAGT TTAATGGGAATTTTTTTCGTTTTATTCTTTTGAGGTGTTGCATGTTTCAATGTCGTTGATCGTGTATTTCAAACACGCAG TTAAGAGGATCCCATGTTAACCTAAAAACTATCGATCTTTTTTTTTTTGTCAATAAAAAAAAAAAAACTATCGATCTTGT CTTGCTTTAAAACATTACATGGGCTGCTATTGATGATAGGTTCAGAATTAGAAAGAAAGGAAGGAGAAGAGGAAACGGAG AGAGAATAGAGAATTCGGAGGAAGACGACTAACATCATATCATTCATCAACATCCATTGAGCCATGGGCTGCTTATATAG AGCATAAGAGGACCGAATCAATA
CDS sequence (LotjaGi1g1v0243500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAAGGAATTAGCAAACAAGCAAATCAAGTTTAAGCACTACATTTTTACTCCTATCAGAATTCTCAAGAGAGCGAA GGAACTTCTATACTTGAAGGGAGTGAGGAATCGTAGTGCTTCAAGACCTGGTAATTATGGTCATGCAGCTTCTTCTATTC AGATTTCTTCACACCACCTTCAGGCTAAGAGCACCAATATCCTCAACAATACTATGCCAAGGGCAACTGGTGACAAGAGA CTCAACGAGCTTTCGAGAACGGTGCCGATCAAAAATGCGGAGAATCAAACAAAGCTTTTCACACATCTAGGGATGGAAAC CAGGGGTGCTAATTATAATATTCAAAGGCAAAGGCAACGGAGTACTATGGGGTATAAATATAATAGAATGAAAATGAGTT ACCGCACTGAAGTGAGGAAGATGGAGACAGTTGATGAAGATAAACCTTGTTATTTTGAGGAAGATCGAAGTGATAATTCT AACTCTAATCTTTTGTATCTGTATCCAAGAACAAGGAACTATGGTGGTATTAACAGGCGCGTTATGTTTCATCAGTGA
Protein sequence (LotjaGi1g1v0243500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKELANKQIKFKHYIFTPIRILKRAKELLYLKGVRNRSASRPGNYGHAASSIQISSHHLQAKSTNILNNTMPRATGDKR LNELSRTVPIKNAENQTKLFTHLGMETRGANYNIQRQRQRSTMGYKYNRMKMSYRTEVRKMETVDEDKPCYFEEDRSDNS NSNLLYLYPRTRNYGGINRRVMFHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 182 | 179 | 8.4E-27 | – | |
| PANTHER | 4 | 182 | 179 | 8.4E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0243500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…