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LotjaGi1g1v0249400.2

Overview

Field Value
Gene ID LotjaGi1g1v0249400
Transcript ID LotjaGi1g1v0249400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3T7V1|I3T7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0249400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:59975979..59979773) extracted from Lotus japonicus Gifu genome v1.2.

GCAGATTATAGAAATGGGACTGATGACTCAAGCTGATTATGCAGAAGCTAGTGAAAAAGCATTGAGCTTGTTTGAGTATG GGCAGGTAATAAGGTTCTTTGACTAGGTCATTGTTAAATTTCGGAAATAAAGAAAGTAATGAAGTGCCTTCTCATTCTAG ACAGTAATGTTTAACCTGTAGCATCTCTGCAAACATTTAATAAGTCTTAGAATTTGGGCTGAGCCTAACTCAATCATAAA AGTTAGTTCTTATGGTGAAGATTGTTCAAGCCTTTAAAGGGACTACTTTGGTCTATAGCTAAACTAAGCATGTTTATCCA ACTTATATTCATCATTTGACTAAGGATCTTTGTTGTTAAATGATAAAAGGTATATACAAGACAAGTTGGGAATTAAAAAT TTGCAAAACCATGTCAAACCACCTCTATATATATATTATTCAATGAAAGAAATTATCATCATAATCCAATAGCCCACATA TCATTTCAATCATTTTCATCAGCAACATGATTAAAAAATGCTGCTTTAGACAGGTCACTCAAACAAATGCCATGTACTTC TACCAACCTCACCTCCTGCCATATAAATTTCATTTCCCCCCGAAATTTGTGTGTACTTTGTACTGACTAGTGGGGAAATC TTGATTTTATGATCTTTTTATCCAAGGAACCTAGTGTGCCGAAATCATTCAATTGGTATACCCTTAGGAATGTAGATGGT TGGTCCCTTGATTGATTACTCAATCGTTTGTGCATAACATATATTTGAACCAATATTAAGTATCTTTCCTTTCTTTGTTG CGCATTTGACATCTCCATTTGATTGTCTTTACAGCAAGTGGCTTTGGAACATGGCCTCATATTGGTAGATACTAAGTATG AATTTGGCAAGGCAGATGATGGTTCAATTCTGTTGATTGATGAGGTTTTATGCTATCCCTAATACATATGTGATTCTCAC ATGCACTCACACACTTTGTCTATATGAAGTTTTTTTTGTTCCCAACTCCAGGTCCATACTCCTGATTCAAGTAGATATTG GATTGCCAGTTCCTACTTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATGTTGATAAGGTGTCTATGTCAATGTGTA CCTTTATTTTTCCTCAAAAATAAAAAAGAATGTGTACCTTTACCTACTTCATTGAGTGAGATGTATTTTTATTGCCAGTG TACAAATTTCGTGGATGTAAGAATGTAAGCAATTTGCTACGTCTTCCATCTATTTTTTTTATGAGTTATAGATAGTAAGC AATTTGCTAATATTTAAGAGTCCAATTTTTAGGAGTTCTTGAGGCTGTGGTTCAAAAGTCACTACAACCCCTATGAAGAT GAGGTATTTCACATTTACCATGCTAATGCTTAGCCTATAGGCTTCAAATATGCATCAAATCACACTTGTGACTTTTGTTT AGGTCCTTCCTGATGCTCCTGAAGATCTTGTTTTAGAGTTGGCTTGGCGGTATGTTTATTGGCACTTGTTCCTTTTGCCC TTGATATATTCTGCTTTGAACTTATTTAGAGAAATGGTTAAGAGTAGTGTATGATTTTTTTTTCTAGTTTTGTTCTGACT AGAAAAAGATGGACTTATTAGTAATTCGCTAGTTTTTTTCTGACTTTCGAAGTAAGAACCTTGCATAGATTTCAGTAATG CATCATGTCTGTAACTGGTATGTTTTAGTTTGTCTGTGCAATTTGGTGTAGCAGAACCAGTGCCATATATTGTCCTCTTT TCATTTTGGAAAATAAGATATATCCTCGATAATGTAAAAGGGGAAAACTGAATTACAAAGTAAAGCAGAAAAATTCCCTT GTCTGAGCTTGTGCTTACCATTTCAAAGCTGCCTATGCTCTTCAGTTCCGTGTATTTATTGAAGGTTTGTCTTCAAAATT TTAAGCTTATAGCTTAGAAAGTCTTAATATTGGGAAAAGGTAATCTGAGAAAGAAATTTCTGTTGTTTTCCCATGTATGA AGAAAAAATTCTGACATGTTCTTGCTAGTATGTATAATACAGCATATATGCTCTCAATTGTGTAAAAATGTTTCCACTAA TTAGCATTTTTCTTGATACTGTGATCATCACAGTTTCGGTATCCTATTTTTTTAACATGTTTGTCCAGTTTATGATTGCT TACATGGATCAACTTTCTGTGAACAAATTATAGTTGATTTTGAGTGCACAATTTTAAATTTTTATTCATCTGAGCATTAT ACTATTCTTCTCGGCAGATATATTTTCTTGTATGAGACCATTACAAAATCCAAGTTTGAGGTGCTATTGACTGAGGTAAT CCATACACCAATTTATTTGATTCTATTATCCAATGCAATTAATACTAATATAACGAGTTTTCTTCCTGCAGGAGCCAATT CATGAGCGAATTTCACGAAATGTTGCAAATGCACTGTCGTCCTTATAGTAACCCTGGAATATTAGGGGCCATCTTAGCTC TGTAGTTTAATGATCTAGCTCATACTAAAAAATACATTAAAAACATCAAATTAACGGAGAACTACCAAGAAGTTTTTATT TCTCTAAATAAACAGAAAGGCAGAACAAGCTTTCATGCTCTTCCAGATAAAGCTTGTTTCTAGATTGTCATGAAAATAGT TCAGAAATTTGACACCTTGTGACTTTTTCTCTTTCTTCTTTTGCCCCAAGAACAAAGAGCTGTTTTTGAAGGCAGAACCA AATGTGTCCTTTGCCTTGTATTTTTTTCCCTTGTGACAGTACTTTTGGATTTATCAGCCATCCAGCCAGAAAGAAGACAG GGAGCCATTTAGAAAAAGTTGCTCGTACATTTTTTTTGTTAGTGGTTTCAGTTATTCTATTATAACTTTTATATTATGAT AACTAAACTTCAATCTGTGATGGTACCTTGAAAAGTTACTGCTGTGTAATATAGAATTCAATGTTTTCATCGTTTTACAT TACCCTAAATGAATTCTCTGTTGCTGCAACTTTGTATTGTAGATCCCCGTCTCAAACAACCATCTAAATGTTGCTAATTT GCTGGATAACAAGGGGCACTATCCTTTACTTATATTAAATTTTATTTATCCATTAGTTCTAACATTTTATGTAAAATGTT CAGTGTGGGTTTTTCACCTTTTGAAATTTGAAAATTTAATAAAGGATGAAAATGTCAAGTAAAACATTGTGTTTAATTAT CCTCTTTTTTATCAATATGGAAGGGTCCCTCCTATTTAATAAATATGAAGAGAGAAATAGACATACATGGAACTCTTGGC CATGGAGCAGGAGGATGGATTGCAGGTTTTTTTTGGTAGAGGAACCCTGTAGGAAATAACAAACATGGAACTCTTGGCCA TGTGGCATGGGCTGAACTTGGTTTGGGATAGGGGTTTCAGACAAGTTATTTGTCAGTCAGACTCAACCGAAGCTTTAGCT CTGGTGCTTGGTGTGCCTCCTCCGCGGCATCGCTATGCAGCTCTGATTTGGAGTATCAAGGATCTTCTATCGCGAGAGTG GGAGGTGTCCATGACCCACATGCTCCGAGAAGGGAACTCATGCGCTGATTTCCTTGCGAAGTACGGTGCAATGCAGGATG AGCCTTTGGTTTTGCCGCAAGAGCCTCTTCCTGGGATGACACAGCTCTTGTTCTGGGACTCTGTGGAGTTCTTGTTTGAG AGGGGTTGACCTCCTCGTTTTTTTTTTTTGTCTTTTGTTTTGTTGGGGCTTAGCCCCGCTCTTTTACCAAAAAAAAAAAG AAGAAAAATAGACATAAAATTTTAACTTAAGAAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0249400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACTCTTGGCCATGTGGCATGGGCTGAACTTGGTTTGGGATAGGGGTTTCAGACAAGTTATTTGTCAGTCAGACTC AACCGAAGCTTTAGCTCTGGTGCTTGGTGTGCCTCCTCCGCGGCATCGCTATGCAGCTCTGATTTGGAGTATCAAGGATC TTCTATCGCGAGAGTGGGAGGTGTCCATGACCCACATGCTCCGAGAAGGGAACTCATGCGCTGATTTCCTTGCGAAGTAC GGTGCAATGCAGGATGAGCCTTTGGTTTTGCCGCAAGAGCCTCTTCCTGGGATGACACAGCTCTTGTTCTGGGACTCTGT GGAGTTCTTGTTTGAGAGGGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0249400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELLAMWHGLNLVWDRGFRQVICQSDSTEALALVLGVPPPRHRYAALIWSIKDLLSREWEVSMTHMLREGNSCADFLAKY GAMQDEPLVLPQEPLPGMTQLLFWDSVEFLFERG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd06222
1 79 79 1.29502E-23 –
ProSiteProfiles
PS50879
1 83 83 10.815
IPR002156
SUPERFAMILY
SSF53098
1 87 87 1.64E-10
IPR012337
Gene3D
G3DSA:3.30.420.10
1 86 86 7.8E-11
IPR036397
PANTHER
PTHR34023
2 90 89 1.8E-31 –
PANTHER
PTHR34023:SF2
2 90 89 1.8E-31 –
Pfam
PF13456
2 80 79 5.1E-17
IPR002156

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0249400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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