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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0249600 |
| Transcript ID | LotjaGi1g1v0249600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 9A; TAIR: AT3G19770.1 Vacuolar sorting protein 9 (VPS9) domain-containing protein; Swiss-Prot: sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A; TrEMBL-Plants: tr|I1KA37|I1KA37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0249600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:60023358..60028878) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATGGCAACCTCAATGTTGAGTTTTTATTTTTGAGCTGTTAGCAATTAGCAATTCTTCACAGTCTTGATGTTTGTTG GCAGCGTGGTTTTAGACGTATTGAACTTCTTCTTTTTCGTGATTCTAAACTCGCTTTGGGTCTTTTGAAGGATACTCATC CTCCATTTCATTTTCATGCTTCAACTATTAATCGAATCAATAAGAACTTTGAACGTGGTTGGGTTGTATTGTGCCATCAC TTTCTTCGAGAATGGAATGCTGTGGCAGATTACTCGGCTAAGCTTTGTCTTCTTTTTCATTGACGGTTTGGGACATTCCT CCGAAAGACCTTTCATCTCTTAATGGCATATTCCTTTGATACAACTTTCCTTAAACAATAATTTTTGTCCTTTTTACTTC TTGTGAGAAAAAAACCAAATAGTGAAACTCACTCAATTTTCACAAAAGTTAAATTTGATTAATCTGACTATTAAATTAAA GATTCTCATTAAGATAGTGAAGTTTACAAGAACTTCATAAGGATCTTCATAGTTACTTTGAATTTGGTGATTTTCTTCTA ATCCCTGAAATTCTTCTTACAATGAGACACTGAATGTCACGCGCTGCTTGAATTTCCTCCGTGTCGGCGTTGTCAACGAA GACGAAGCTGCAACTGCAACAGAGAGAGTGACTGAGAGAGAATGGAAAACGCCGACGTTTTCCTCGGCTTACACGACTTC CTCGAGCGGATGCGGCAACCCGCCGCCGCCGATTTCGTCAAAGCAATCAAAAGGTTCTTCTTCTTCTTCTTCCTTCATCA CTGTGTGTAAATCGTGATCGTGATTTAGGTTAGTTCAATTTGAAATTGGAAATTGGAATTTGGAACCCTCTAATCTAGTG GCGATGATTATGCAGTTTCATCGTTTCGTTTTCGAACAATGCTCCTGATCCTGATAGGGACAGTGCCGCGGTTCAAGAGT TTCTTGCTAACATGGAAGCCGCTTTCAAGGCTCATCCACTTTGGGCTGGTTGCTCTGAAGAGGAGCTCGAGAGTGCCGGT GAAGTCAGTTTCTACTTGTTGCTCTGTTCAATTCTACTCTTATTTTTTAAGCATTGCTTCATTCATGATACCAATAAATA TATATATTTAAGTTGTTGAAATTAGTTTTAATCTTCATTTTAATACTATTTAATACTGGAATATTTATTGTGCTTTGATA GTTACTAGGGTACATGTTTGATTCCCGTAAACAATGTCTCAGGTTCGAGTCTTGGGTATGGAAAAGACGGTTGGGAGAAA TAGCCCCATGGGCGATGAGACAAAGAAAAACAGATGTATAAGTTTATAATTGAGAAGTATGATCATGAATATTATTCTGA ACTACTACTAAATGGACAAGTAAATAGGAATGATTTTAGAGAGATAAAGTGGAGTGCCGGTAGTATAATAATACTGATCA CAATCAGCTAACTTACTGTACTGTGACCTGGCATTGAACTTCCTAATCAGACTTGCACTATATTTATACTGCAGTTTTGA TCTTTGCCCTGGATCTTGGGATGGTTGAATAGAGTTATCTGTAAAATGATCACAACCCAAAATTTTCCCCATTTTCCTGT TTCTGGAAGGGCATTTATTGGTTTTTCTTTTTCAATAATGGGGAATTCTGTAATGTAGAAGTGAAGATCTAAAAAAATTG GGAGTAAAAAGTTGGACTGAAGACAGAATTTAGTCCAGCTGTAGGAATACCACATCTATCTACCTCAGTGCGAATAATGC TGGGTAGCAATAAAGGAAGCAATGCTGGCTAATGGCTATAGGAGTGGCAAGGGCTGTTGCACCATTTTAAGGAAGACTGA CCTGCCAATAGCAGTGGAGCGCACATTAGTAACTTGCAGTTGTAGGATAATTGCAGATAATCTGAGGTCTTATCACCACA AATGATGTTTCTACTAGTTTTTTTAATATGCCCGTGGGGTTCGACATGTTCATGAGCAGTTCAGATTGAGCATCTGCATC AGAAAGCTAGTGGACATGAACGAATGCTAATCTGAGTCCTCATCTTAGGGTCTGTTTGTTTGTGCCAATTTTTGAAGGAA AAAGTTCATTTATTTGAATACATGTTAAAAAATGATAATAGAACTTGGGTTTGATTATGCATAATATGTAAATTCAAGTT GACAATAGTGTTTTTACACAACAAGAAAACAATCAAGTTCAAGGCACACATACGACGGCAGCTTAGATCTTACTAGTAGT CTGTCTAGTCACTTTGTCTGCCAACTTAAACACCCATACCTGCCATCTCTGTTATGAAAGTAGTTTCAAGAAAGCTTATT CTTTTTAGTTTAATTAAACTCTTGCAGTCATATAGGTTAAATAAATTTGTTAATCCCTTTGCCTCTGGGTTTTGATCATA TACAGGGGCTTGAGAAGTATGTCATGACAAAGTTATTTTCCCGCGTATTTGCTTCACTTCCAAATGATGTAAAATTTGAT GATCAAATTTCAGAGAAGATGGGGTTGATTCAACAGTTTATCCGCCCAGAAAATTTGGATATCATGCCAGCATTTCAGAA TGAAACTTCATGGTTGGTGAGTATATAACTACACATCCAAAACTATTTTTACTTACCTCTCTTTGCACAATTATGTCATC TAAGTTCAATTTCCTCATTGATCGACATTTTCTCATTTATAAAGGTCACACCAAGTGTAATCATGTTAATGATTTCTTTG ACTGTTAATCAACATTGCTTAAACATCAAGCTCAAATGCTGCACAATTCTCATCATGGCTCTTTCTACTTTGGTTTTTAA TGCAACTATAAAATGTCCAGATTTGCACATAAGCTAGTAGTTGAACTTATTGAAAAGTTCATAGTTACATTCCAAGTCTG AACTCCACATAACAACTACCTGTTATGGGACATAAGCACCTTGTACAATGCGGTCTAAATTCATATGATTGGGGCCCCTA TTCTGACAATTTAAAATTTTCACATGATAGGTGATGATGTATTGATGTGTGCTTTCCCTACGATTCACTTATTAGTTTCC AGTTGTTGTTTTGTCATCATTTTCCAATGCCTTTAGACCGAATGTGTCTTGTGTACGCTGAATTTCAATATTTTTAGATA CAAAGTTATTGGGTTTGTTCTAATGTTTGTTGGATAATATTCTTGTTCTTAATTGACCAAGCTCCTCCTAAGTGTCAATT TTCGGTTTAATGCATCGTTGGGTAGTTGCTAGTCACTATACTAGTTTGTTAATACTGAATTTATCAATTGCAGGTAAAAA CACCAGAAGAATTCTTCCTAACTTTTGTTTGTACTATGACTTTGGAAACTAAGATTACAATTTTGACTTGTTTATTGTTT TCTGTGTATGCTCCTGCTTCCTTTAAATCTTATATTTTTTTTTCTCATTCTTATGGTGGCAGCTTGCTCAGAAAGAATTA CAGAAGATCAACATGTACAAGGCGCCAAGAGACAAACTTATCTGTATCCTGAATTGTTGCAAGGTTATTGGAAACTTGCT GCTTAATGCTTCTCTTGCTTCGAAAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTAATTTATGTTACCATAA AGGTAACCTTAATGTTTCACAAGAAATAGATACTTGCATGATTCTCATGTAGAAATAATTTGGTTGAAGAAAACAGCTAT TACTTCCTGCACTCTCTAAACTATTATTGGTATGACTTAATGTGCACTTCTATATTTAGTATTTCCTTTGTCCTGCATTG CCTCTTCGATTTTTTTCATTATATTAACTTGTACAAACAAAGCTTCTGATTCTGTGTAGTTATGTAAAGTCCCTCGTGAT TATTTCACATGGCAATATTTGATGAGGGTTTGAAATCTCTTGCCTACACGGGTCCATTCATGATGGAATTACCATACGCA TATACGCTTTTGGGAGGCTGGTTGCATTATTTTTAACTTTGAAGTAGTCTTTTGAACTGCTCATGGTACAGAGCTATATA TATGAGCTTTTGATTTTTATATTTCAAAATCTTTGGTATCTAAGTTGTTTAGTTTTACTTTTTTGCTCAAACCTGAGGAA TGGTGAAACTAGACAAGTGAGACAGACTTCTGTGGAAGACTTAATATTCAGATGTCTATTGAGTTAGTGCATCCTTGAAT TATGGAATTCCTCTTTTTTGTATGTTTCCAGAAATTAGAAAAACTTTAATTATGCAGAGAAAACAAATATTTTTTTCAAA CTCTACTTTAGGTGCATTTTAACATGAATATACTTGATTTTACAGTTAATTTAAATCTTCTACAAATGATATTATGCAGG CAAACCCTCCACAACTGCACTCAAATCTACAGTACATTCAAAGGTTTAGACGCCAAACTCGATTGGCTGGGGAAGCGGCA TATTATTTTACAAACATGCTCTCTGCTGAGTCCTTCATTTCAAACATAGATGCAAAAGCCATTTCAATGGATGAAACTGA GTTTGAGAGAAACATGGAATTTTCCCGTGCTCTTCTTTCTGGGCTTTCAGTTGATACACAAGATCCCAATTCACCCTATC AAAATTATGGGCAGCATCCAAGAGCAGAACCTGCTAAACATAGAAATAAAGCTCTGAATGATAATAAGGACCCTACATTA CGAACTCCTTCATCTGTGGCAAAATCAGAAAGCAAGAGAGTGAGTTTTTCAGATGAGTTATTGATCACAAAAGTTCCATC CCTCTCAGATTTGGAGAACAAAGGGGCAAGTATGATTTTGAAGGAGGATAAGTTAAATGAAATTTTCGGGGAGTTTCCAT ATTTGTTTGCTAGTGTAGGTGACTTAACAGTTGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAG TATGTATCCCTTTCCAAAGGGTTAGGTGTCTCTTCTACATCCAATTCTCAGAATAATACTCAGGACCATGTTGAAAGTGA AACCACACTAGATTCATCTGAAGGTGAATCTGTTGGTGCCATTGATGAACCTGAGAAGTCTATTGATACAATGGAGGATA GTTCAGAGAAAGTTTCACCTCTTGAGGAGGCAAAAAGTGAGTCGGATCTGCCACAGGAGGAGGCAGTTGCACCCGAGGCC GCTGCCCCCTCTTAACTAATTGGAACTAGTCTACAATGTTTTGTTTTTTGAATCATATACCCTCATTTTTTTACTCTCTT TTTTGTGTAAATTTAGTTATATCTTTCATTGTGTGGTATCTGTCCTCATTCCTCATGTTAGAGATGGCAATACCAGGACC ACTATGCCCTCTGTAACATTGTTCTTAAATAGATTTTGTAACAGCTGCAGCAGATAGTAATTTTGCATTTAGTTGTGTAA TGGGACAAAAAGATGAAGAACCAAATCTAGTTTAGTGCAGGTTTGGAAATTCTTTTATAATTGATTATAAAGTCAAAGTC AATTCTGATAAGAAATTTCTGTAAACCAGAATTGATTTGAAGGAAAGAAAAACTGATGCTAATAGTTCTATTGAGCCTGT A
CDS sequence (LotjaGi1g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGCCGACGTTTTCCTCGGCTTACACGACTTCCTCGAGCGGATGCGGCAACCCGCCGCCGCCGATTTCGTCAA AGCAATCAAAAGTTTCATCGTTTCGTTTTCGAACAATGCTCCTGATCCTGATAGGGACAGTGCCGCGGTTCAAGAGTTTC TTGCTAACATGGAAGCCGCTTTCAAGGCTCATCCACTTTGGGCTGGTTGCTCTGAAGAGGAGCTCGAGAGTGCCGGTGAA GGGCTTGAGAAGTATGTCATGACAAAGTTATTTTCCCGCGTATTTGCTTCACTTCCAAATGATGTAAAATTTGATGATCA AATTTCAGAGAAGATGGGGTTGATTCAACAGTTTATCCGCCCAGAAAATTTGGATATCATGCCAGCATTTCAGAATGAAA CTTCATGGTTGCTTGCTCAGAAAGAATTACAGAAGATCAACATGTACAAGGCGCCAAGAGACAAACTTATCTGTATCCTG AATTGTTGCAAGGTTATTGGAAACTTGCTGCTTAATGCTTCTCTTGCTTCGAAAGAGAATCCTCCAGGAGCTGATGAATT TCTTCCTGTGCTAATTTATGTTACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACAGTACATTCAAAGGTTTA GACGCCAAACTCGATTGGCTGGGGAAGCGGCATATTATTTTACAAACATGCTCTCTGCTGAGTCCTTCATTTCAAACATA GATGCAAAAGCCATTTCAATGGATGAAACTGAGTTTGAGAGAAACATGGAATTTTCCCGTGCTCTTCTTTCTGGGCTTTC AGTTGATACACAAGATCCCAATTCACCCTATCAAAATTATGGGCAGCATCCAAGAGCAGAACCTGCTAAACATAGAAATA AAGCTCTGAATGATAATAAGGACCCTACATTACGAACTCCTTCATCTGTGGCAAAATCAGAAAGCAAGAGAGTGAGTTTT TCAGATGAGTTATTGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAACAAAGGGGCAAGTATGATTTTGAAGGAGGA TAAGTTAAATGAAATTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACTTAACAGTTGGTGATGTTGAAGACC TGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTATCCCTTTCCAAAGGGTTAGGTGTCTCTTCTACATCCAATTCT CAGAATAATACTCAGGACCATGTTGAAAGTGAAACCACACTAGATTCATCTGAAGGTGAATCTGTTGGTGCCATTGATGA ACCTGAGAAGTCTATTGATACAATGGAGGATAGTTCAGAGAAAGTTTCACCTCTTGAGGAGGCAAAAAGTGAGTCGGATC TGCCACAGGAGGAGGCAGTTGCACCCGAGGCCGCTGCCCCCTCTTAA
Protein sequence (LotjaGi1g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFLANMEAAFKAHPLWAGCSEEELESAGE GLEKYVMTKLFSRVFASLPNDVKFDDQISEKMGLIQQFIRPENLDIMPAFQNETSWLLAQKELQKINMYKAPRDKLICIL NCCKVIGNLLLNASLASKENPPGADEFLPVLIYVTIKANPPQLHSNLQYIQRFRRQTRLAGEAAYYFTNMLSAESFISNI DAKAISMDETEFERNMEFSRALLSGLSVDTQDPNSPYQNYGQHPRAEPAKHRNKALNDNKDPTLRTPSSVAKSESKRVSF SDELLITKVPSLSDLENKGASMILKEDKLNEIFGEFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGVSSTSNS QNNTQDHVESETTLDSSEGESVGAIDEPEKSIDTMEDSSEKVSPLEEAKSESDLPQEEAVAPEAAAPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 419 | 419 | 3.7E-194 | – | |
| PANTHER | 1 | 419 | 419 | 3.7E-194 | – | |
| SUPERFAMILY | 11 | 257 | 247 | 1.12E-63 | ||
| Gene3D | 17 | 97 | 81 | 3.4E-38 | – | |
| Pfam | 27 | 91 | 65 | 5.8E-14 | ||
| Gene3D | 99 | 265 | 167 | 1.7E-68 | ||
| ProSiteProfiles | 102 | 246 | 145 | 42.413 | ||
| SMART | 135 | 254 | 120 | 2.4E-31 | ||
| Pfam | 138 | 241 | 104 | 3.7E-31 | ||
| MobiDBLite | 272 | 314 | 43 | - | – | |
| MobiDBLite | 285 | 299 | 15 | - | – | |
| MobiDBLite | 300 | 314 | 15 | - | – | |
| MobiDBLite | 394 | 419 | 26 | - | – | |
| MobiDBLite | 394 | 468 | 75 | - | – | |
| MobiDBLite | 423 | 456 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0249600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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