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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0264800 |
| Transcript ID | LotjaGi1g1v0264800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT1G44110.1 Cyclin A1;1; Swiss-Prot: sp|Q7F830|CCA11_ORYSJ Cyclin-A1-1; TrEMBL-Plants: tr|A0A072V0K7|A0A072V0K7_MEDTR Carboxy-terminal domain cyclin; Found in the gene: LotjaGi1g1v0264800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64749335..64755774) extracted from Lotus japonicus Gifu genome v1.2.
CGTTCGCGAAACAAAAGCAATCATCCCAATAGGGCTTTTCACTGCAATCTCAAAACCTAGGTTCATCCCTTTTCAATCTC AATCACACACTACCACACTCTACGTTTTCCTTTTCTTCTACACATTCCCCTCTTCTTCCTCTCTGTTCATGCGCTTCATT TCACAAACGATTAACAAACTGAACTCACCGTTTTTTCCCTGCAGCGAATTTTAGGGTTTTCGACGCGAAATGTTCACCCG AACGCGGCGTTTCCCTCCTCCTCCTTCTTCTTCTTCTTCTTCATCTGAGAAGCGTTCCTCCACCGTTTCGGAAAAGGTGA CCAAGAAGGTCGATGCTGTGAAGAGTCAATTCACGAAGAAGCAGAAGCGCCCCGCTCTAACTGATGTCAGCAATAGTAGA AATCCATCCACTCTTGCTGCGAGGACATTTGGTTGTGTTCCGCCCAAGCCTCTGGTACTGTTGTTCGACCATTGGATTCC TTTATTCTATGTTCGTTTTTTTGTCCATTTGTGATTTTGAGTTTGTGTTCTGTAATTCTGTTTGTTTGTTTGTTTTTGTG ACTTGTGATTGGTGTTGAAATTACGTTTGGTTATATTTTATTGGTGCTTCTCTTATTAGTGAATTTGCATATGAACAAGC ACGAGAGGTGAAGGTTTCGGCGTGCTTTTGGATTTTCGTTGAATTCAATGTGATCCACATTGAAGTCAGTGTGTTAGAAT TCTGCTTCTGATGAAATTTTAGCTTCTTCGTTTGTGCTTGAAATACTTAAAATTATGTTTACGTTATTCTAATGTCAAAT CAAATATGCATTTTAGTGCACCTGAAAAACATGGTGTGCCAAAATCATAGTGTACCGAAATCATGGTGTGCTGAAATCTG ATGACCAGAAGTAACTTGTATCGGCTTTTATAGCTGCGCGCCATGATTTTGGTTTCACCTAAACATGGACTAATTGCATA ATTGTGAACGTGCATAAGTTGTGTTGTTGAAGCATTATAGCAATGTGATAACAACATGGTTCAATACTTAAATTTACGGT GAGCTTCACCTCTCTTATTGTCAAAAGGAATTCGCATCCTGAATCCACCTACACTTATAGAGATAGAAATAGAATAGACA GAAATTATAAATATGTGATAGGTGGTGTTATGAGAAATAAGAAAAATATACGAGAAAATGAGTAAAATATGAAATATAGA GAAATTGAGAATGATTATATCAAAACCCTTGTAAAAATACTTGGCAATTTTGATTCACTAGAGGATCATTTCATTATTAG AATAATTCTCACTTTAATAATTAATATTAATAAAATATTGAATTAAATTATACACAAAAGTGATATTAATATTGAACAGT ATTTGTGGTAAGATACTTACTTATTATTATTTCCCAATATATATCATTTTGCAGTTGCACTAAATCTCCAAAGTAAGAAT AAAAAAGCATACATCTAGAGCTAAATTGGTAACTGTTTAAAAACATTCATCAAAATGGGTTATTTTAAAGCCAAATGTTG GCTTTTTATTTTGGACTAACATCACATTTAGTCTATTATTAAAATCATGAGTGCTCACCACATATGCTTTGAATGTCGAG CATTTTTTGTTTTCGTGCATGTGTTAAACTATGTTTGATTTCTGTGCTTTAACAGACTGTTATATTGTTATTTGAAGGTT CCATGCATGTCCAAAACTGCCAAGACAAAAAAGGATTCCATTGTTACTTCGCAGAAAAAAGTTATTTCTGGGAACACTAG GCAAGCCTCACTGAGTTCAAAATCAACTGTATTGGCGTTTTCCAAAGATGCATGTTCAACTGGAACTAAGCAACCTAAGA CTGGAGTTAAAGCCTTCGTTGCTCCAAGCACTGGTGATGTGGTTTATCCTAATTTTGATAGTGGGATCTCTGCTCCGGGG CTGGTGGGTAGTTCTCAAAGTAAATGCTTAAGCAATTCAGTTTCACTGGATGAGAGCATGTCAACAAGTGATTCTTTGAT GAGTTTGGAATTTGAATATGCTGACAATGGTGATGTTGTATCGACCAAATCAATTGAGAATAGGGCATGTGGAATTCTCA GTATTTCAGACTCTTCGAAAATAGCAGGTTCATTTATTGAAGACTGAATCTTACTTTCCCCCACTCTCTCTAAGCTAATT TGGATTATACTTTTATTAAATAAATTGAAGTTACAATATGGAATATATATATATATATATATATATATATACTTGTTTTA CTGCCCTTCATTTGCATTCTCTCTTTATTTTCAGGGAGAATACATGGCAGTGATGCCATCATGAAGAGAGAAGCAAATGA AGTTGTGGATATTGACTACAATATCAATGATCCACAATTCTGTGCATCCTTTGCCCATGAAATCTATGAAAATTTGCGTG TAACTGAGGTTTGTCATCTTCATCTATTTTACTCATTTTAACCACCTATTTTAAATCGCTAGGTGATTGCTTGCAGAGAG TAGCAGTTTGGTTTCACATGATGTGTTCATATGTTTAGAAACTTTTTGTTTTTGTTAAATTAACTATTGTGGCATTTGTC AATAAGAGATATCATAATTGGAATGCTACACATTTATTAAATGTGAAAATCGAACTGAATTGCTTCTTCTCCAAATACAT TTGTCTTATTCACATATACAACTTTTGATTATATTATTGCACCTTTTGTCTAGATGTTTCTGAGAAAAATTAGGCATAAT AGTAAAAGTCATGTTCACATCGGGTAGAATATCATGTAATGTTTGGATTAATAAAGTTTGAAATCCATCATTTGCATTTT CTTCTCTTTTGTCCTTCTCAATTGTTTCTTTATATAAATTTGACCTTGACGTCATATGGAAAAATAGTTGATAAAATTTG CAATAGAATTCTGTGAGTATCTTATTAATGTGATTTGGTCCCACTTAATGGGCTATTGCATTTTATTTTGACAACCTGAA GAGTTAAGTTATTATGGGATATGCCTCTTGGGAGTTTCAAACAGAGTTATGCATGTAGTCATGCCTGTGCGAACTTGAAC TTGTATCCTTTCTCTCTATTTTTATTCCTTTTCATCTTTTGTTCTGGTCTACTTTCTGGTTTTAGGAAACCAGAAGGCCG TCTATGGACTTTATGGAGAAGATACAGAAAGAACTCAATGCTACCATGCGGGCAATACTTATTGATTGGCTTGTGGAGGT ATAAATTATGGCGGGTGATGGTATTGCTGGGGGGATATATTTATTACAGGGAAATTTGTTCTTCTCCATAACCCACTTGA AAATTGTGTATACATTGAAATTATGCTATGTCTTATTTTATCCTGATCAATGAGGCTTTCTACTTCATGAAAGAGATTAA ATTGCCAATTCTCTAATTCTTTCTTTGTGTTAAAGATTTGAATCTGCTCATGTTACGAGTGATAAAGACATTAAAGCAAT TATATTAGGCCTCATTAAACTTGCTTTTATGTCTTACTCTCATAATTTGAGACAGAGCATGAGAAGACCTAAATCCTTGA GTTGTCTTTCAAATGTGTTTCACCTGAATTTCTTTACATTGTAGGTTACTGAAGAGTATAGGCTTCTACCTGATACACTA TTTTTGGCAGTTAACTACATTGATCGATATCTTTCGGGCAAGGCAATAATTCAGCAGCGATTACAACTACTTGGTGTTGC CTGCATGATGATTGCTGCGTAGGGTTCTTATCTCTTAATTCTTGTTTGTTAAGAAATGTATGCTTAATTTGTGCGAGTGT ACAATGTGTGTTTCTTCTTTTTCTTCTTCACTTCTGTCTGTCATGCATTTCTGTGCCTGTTCCATAACTATAAGCTTATA AATTAGTTTGATTTTGCATGCCAGCAAATACGAGGAGATTTGTGCCCCTAAGGCGGAAGATTTCTGTTACGTGACTGATA ATACATACTCTAAGGAGCAGGTTCGGGTTTTTGTTATCTATTAATTTATAACAGGAGCTATGGATGCCTTTTTAATAGCG ACATCTCCTAAAAATATATGTATGAAATTTTTGCAGATATTGGAAATGGAATCTTCTGTTCTGTATTTCTTGAAATTTGA AATGACAGCTCCTACAGCTAGATGTTTTTTGAGGTAATTACTAGTTTTCTTCTTGTTATTGACAAGTACGAGTGGAATAG AACTGTGTTTCTCTAGTATTGACTTGTGATCATGCCGATGCAGGCGATTCATTAGAGTTGCCCAACAAACCTGTGAGGTT TGTACTTTGATTGAGCTTCTTTTCACCTCTCAGAATTCGGACATTAGTGACAATTCATGGTGGTTGCCTCTTACAATTTT TAGGTTCCACTGATGCGGTTGGAGTATTTGGCAGACTATCTCGCAGAGTTATCTCTTCTAGAGTATGGCATGCTAAAGTA CAAACCATCAGTAATAGCTGCATCAGCCACTTTCTTGGCTAAATACATACTTCTTCCTAGGAAGAAACCTTGGGTATGTA TTGAAGGAATCCTATTTTATTGAGGAATATATTCTTTTGATAAACATATATAGTGATTCTGTGCTGTTATATGTTTTGGT ATAGAATTCTATGCTGAGGCATTACACAGGTTACCAAGCATCAGAATTGCGTGAATGTGTCAAGCAATTGCATTGGTTGT TCTGCAATGGCTGTCTTAACTTAACTGCCATCAGGACAAAATACAGTCAACATAAGGTGAGAAAACCCTTGTCTTGCTCC CCCTATGTATATGCAGTAGGCATCTTCTGCATCTCATTCATCTTTTTTGGAGTTCCCTCGAGCTGTCTTTCTATAACCTA TTTGATATAAATAGCTGATTAGGTGATACTGATATTGAAAACTGACGGGAATTGTTATTAATAACATGAATTTCTTTAAT TGCATTAAGAATTTAGATTCTGCTGATCTATTAAGCCAAAAAAATAACTAACATTAAACTAAGTGAGTGGATTTTCATTG CAGTATTATGATTTCTGGTCAGCGGTTGCTAGACCCGTCCACTCAAAACAAGAGTTTTATTTCTTGAGTTTCTATTATAA TTTCAGTCATTTGCTGAGAATCATAGCATGACAGATTGAATCTATAACCTTCACACGATGCCCCCATCTAGCTGAGAATC ATAGCATGACAGATTGAAGCTATATTAACCTTCACACGATGCCCCCATCTATTTGTGTTTTGTCTGCATCTGGTTCTCAA ACTATTGAGCCTGCATGTGATCAATTTCCCCCATCCCTTCATTTTGTAGCATCTTTCTGCAACTCTGAAATGGATCAGTT TTACTTTTTAACAAACTGGTTTGCTTGCATTTGGGATTAATTTTTTTGTTCATTATAAAACACTTCTGTCATGTTATGGT GTTAATCTTTATCCCCACTTATGATGTTTAAAAGTTACTAATTAATTTCATGTCTTTCGTGTTTATATATGCATTCAGTT CAAGTTTGTAGCAAAGAAGTATTGCCCTCCATCAATACCTGTAGAAATATTTCACAACTAAGCCCGCATGGATCAGGATC CTCTTAATTGTAAAAAAACTTGGACCATGTCAAGTTTTATCATCAACAGTGTTAGACGGCAGAACTTTAGATAATCAAGT TTTTTTCCAATTGAGATGATCAGTTTCCAAGCCCGCATACTAAGATTCTGGTAAGCGGCATGGGATGTCTTCTCTGGAAG TTCTGGATCAGCGCAGCTAAGGGATGTAGCCATGTAGGTGCTCCTTACTCATCTTGCTATGTGGAATTTTGCCTGGACTA GTTCTGTGCCAATTATTAGATGTTCAAGCTATTTTGTGGGATGTCCATTTTGACTCATTTCGCAGCCCTTCTTGCCATGC ACAGTTTCTCCTTCTTTTTAGACTGTTACATAAAATGTTAAGTTGAAATTGATTGTATAGCAAACTATATTGTTTGGACC TCAATTATCCTAGAAAATAAGTATAGGGGTTTTCCTTTTCCCTGCCTTAATTTTTCTTGTAAAGAAAAGTGGCCCCTCGT ATTTGAATAAAGAACTCGATTGCTTGTTTATAATTAATTAAAGGGTTAGTTTTGACAAGCAACAGAAGGAGTCGGTGTCA TAAAAATGAATATGCGTGTTATATAGAGCAAGGAAATTAAAGCCTCAAAAACTCACTTCTAAAACTTTTAGGGTATGTTT GGTTGGGAGAAGATAAGTGAGAAGTAAAAAATAAATTATTATACAGTAAATGATTAGGGGGTGGTTTTTGGCAAATCACC TCCTAGGTGTTTTCTCCTCATATTGGTAGAGAAATGATGGGGGAATGAGCACATGTGGGGATGGTTATGTGCATAATGGC GAAGCATCAATTGTGGGGCTTAGGTCAAGCAATGTTGCATCGAAAGAATAGACGGTGAAGTGGGGGAAAAAAGGGTCGAT CACACAACAATGATGGGAGCCAAGGAATATAGGTTCCAAA
CDS sequence (LotjaGi1g1v0264800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCACCCGAACGCGGCGTTTCCCTCCTCCTCCTTCTTCTTCTTCTTCTTCATCTGAGAAGCGTTCCTCCACCGTTTC GGAAAAGGTGACCAAGAAGGTCGATGCTGTGAAGAGTCAATTCACGAAGAAGCAGAAGCGCCCCGCTCTAACTGATGTCA GCAATAGTAGAAATCCATCCACTCTTGCTGCGAGGACATTTGGTTGTGTTCCGCCCAAGCCTCTGGTTCCATGCATGTCC AAAACTGCCAAGACAAAAAAGGATTCCATTGTTACTTCGCAGAAAAAAGTTATTTCTGGGAACACTAGGCAAGCCTCACT GAGTTCAAAATCAACTGTATTGGCGTTTTCCAAAGATGCATGTTCAACTGGAACTAAGCAACCTAAGACTGGAGTTAAAG CCTTCGTTGCTCCAAGCACTGGTGATGTGGTTTATCCTAATTTTGATAGTGGGATCTCTGCTCCGGGGCTGGTGGGTAGT TCTCAAAGTAAATGCTTAAGCAATTCAGTTTCACTGGATGAGAGCATGTCAACAAGTGATTCTTTGATGAGTTTGGAATT TGAATATGCTGACAATGGTGATGTTGTATCGACCAAATCAATTGAGAATAGGGCATGTGGAATTCTCAGTATTTCAGACT CTTCGAAAATAGCAGGGAGAATACATGGCAGTGATGCCATCATGAAGAGAGAAGCAAATGAAGTTGTGGATATTGACTAC AATATCAATGATCCACAATTCTGTGCATCCTTTGCCCATGAAATCTATGAAAATTTGCGTGTAACTGAGGAAACCAGAAG GCCGTCTATGGACTTTATGGAGAAGATACAGAAAGAACTCAATGCTACCATGCGGGCAATACTTATTGATTGGCTTGTGG AGGTTACTGAAGAGTATAGGCTTCTACCTGATACACTATTTTTGGCAGTTAACTACATTGATCGATATCTTTCGGGCAAG GCAATAATTCAGCAGCGATTACAACTACTTGGTGTTGCCTGCATGATGATTGCTGCCAAATACGAGGAGATTTGTGCCCC TAAGGCGGAAGATTTCTGTTACGTGACTGATAATACATACTCTAAGGAGCAGATATTGGAAATGGAATCTTCTGTTCTGT ATTTCTTGAAATTTGAAATGACAGCTCCTACAGCTAGATGTTTTTTGAGGCGATTCATTAGAGTTGCCCAACAAACCTGT GAGGTTCCACTGATGCGGTTGGAGTATTTGGCAGACTATCTCGCAGAGTTATCTCTTCTAGAGTATGGCATGCTAAAGTA CAAACCATCAGTAATAGCTGCATCAGCCACTTTCTTGGCTAAATACATACTTCTTCCTAGGAAGAAACCTTGGAATTCTA TGCTGAGGCATTACACAGGTTACCAAGCATCAGAATTGCGTGAATGTGTCAAGCAATTGCATTGGTTGTTCTGCAATGGC TGTCTTAACTTAACTGCCATCAGGACAAAATACAGTCAACATAAGTTCAAGTTTGTAGCAAAGAAGTATTGCCCTCCATC AATACCTGTAGAAATATTTCACAACTAA
Protein sequence (LotjaGi1g1v0264800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFTRTRRFPPPPSSSSSSSEKRSSTVSEKVTKKVDAVKSQFTKKQKRPALTDVSNSRNPSTLAARTFGCVPPKPLVPCMS KTAKTKKDSIVTSQKKVISGNTRQASLSSKSTVLAFSKDACSTGTKQPKTGVKAFVAPSTGDVVYPNFDSGISAPGLVGS SQSKCLSNSVSLDESMSTSDSLMSLEFEYADNGDVVSTKSIENRACGILSISDSSKIAGRIHGSDAIMKREANEVVDIDY NINDPQFCASFAHEIYENLRVTEETRRPSMDFMEKIQKELNATMRAILIDWLVEVTEEYRLLPDTLFLAVNYIDRYLSGK AIIQQRLQLLGVACMMIAAKYEEICAPKAEDFCYVTDNTYSKEQILEMESSVLYFLKFEMTAPTARCFLRRFIRVAQQTC EVPLMRLEYLADYLAELSLLEYGMLKYKPSVIAASATFLAKYILLPRKKPWNSMLRHYTGYQASELRECVKQLHWLFCNG CLNLTAIRTKYSQHKFKFVAKKYCPPSIPVEIFHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 66 | 66 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 8 | 24 | 17 | - | – | |
| PIRSF | 9 | 138 | 130 | 180.0 | – | |
| MobiDBLite | 25 | 42 | 18 | - | – | |
| PANTHER | 32 | 514 | 483 | 2.1E-175 | ||
| PANTHER | 32 | 514 | 483 | 2.1E-175 | – | |
| MobiDBLite | 44 | 63 | 20 | - | – | |
| PIRSF | 161 | 511 | 351 | 6.5E-117 | – | |
| SUPERFAMILY | 243 | 380 | 138 | 7.54E-49 | ||
| Pfam | 254 | 380 | 127 | 3.2E-43 | ||
| Gene3D | 256 | 500 | 245 | 9.0E-93 | – | |
| Gene3D | 268 | 381 | 114 | 9.0E-93 | – | |
| CDD | 284 | 373 | 90 | 7.79218E-23 | ||
| ProSitePatterns | 285 | 316 | 32 | - | ||
| SMART | 290 | 374 | 85 | 6.2E-26 | ||
| CDD | 381 | 474 | 94 | 7.18128E-15 | ||
| SMART | 383 | 505 | 123 | 5.1E-37 | ||
| SUPERFAMILY | 383 | 507 | 125 | 4.04E-34 | ||
| Pfam | 383 | 501 | 119 | 4.1E-32 | ||
| SMART | 387 | 475 | 89 | 8.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0264800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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