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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0275600 |
| Transcript ID | LotjaGi1g1v0275600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogen-related protein; TAIR: AT1G78780.3 pathogenesis-related family protein; Swiss-Prot: sp|P16273|PRPX_HORVU Pathogen-related protein; TrEMBL-Plants: tr|I3SX13|I3SX13_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67441684..67445366) extracted from Lotus japonicus Gifu genome v1.2.
ATCATAAACCTTATCTTCCTTCTTTTTTGTAGCCAAAGATGGCATCACCAAGTGTTGAAAAGGACAAGTACCGCACCTAT TTGCACGGAGATGAAGAGAAGAACACCAAATGGAGATTTGGTGCCCCACCTAACTATGAGGCTGTGAATAAGTTATTTGA AGAAGGCAGAACCAAGGTCTCTCTTTTTCTCATCTCCCAATATTCTAGTGTAATGAATATGTATGAGAGTGTTCATGTTA GAATTCAATTCAATTCAATAGTAAACAACACCTTTCATGTGTCAATGACAAATCCGAATGCCTGTTTGGATTTTCGTTGA ACTGAATATGGATTCATGTTGAATTTGATGTGGCAAATCTTGCTTCTCTGATTAATTTCAACATGACAAATTCTAGTTTG TCAGTTGACGTTTGCAACCGACTATATGCTTTTCATGGCTGCAGGAATGGCCTCCTGGATCACTTGAAGAGCAGGTGCAG ACTTTAGTTAAAAATTGGGAAATGGAATTTTTCCACAAAGTTGATATAAACGAGTTCAGATCAATTGATCCTAAGAAATT TACTTTCAGCCTAAATGGTTAGCATGATTTAATTACCAGCTATTATTGCATCTACAGAATTTAAAACACCTGTTTTTGAA GTTAACATTTAATCAATCTGAAGAAATCTTGGTTGTTATGATGCAGGGAGAAAGCCTATGAGTTTGGAAGAGATAGGGGA ACTTGGTGGGGGCTACATTCCCATGTTGCAAACATCCCTACCTCAAAAACTGAGGCCTTATGACCCAGACAAAGAAACAA GATATTCATCTCACATAGCTTTTACTACTACTTTACCAAGAGGGTTTGCTTTGGAGATTCTCCAAGTGTATTCTGGACCG CCAGTAATTGTCTACAAGTTTAGACACTGGGGCTACATGGAGGGTCCTTTCAAAGGCCACGCTCCAACTGGAGAAAAAAT TGAATTCTATGGAATGGCTATTTTCACGGTAAAATAACAACTATGATGATAATTACTATGCGTAGCTTAAGTTAATAAGA GGTAAAATTTTGACATTAATATTTTGACACATGTTATGAGGTGAAATTTCCTAAGATACATGTCAAAATATTATCGACCT ACCTAAGACTGAGGTGATTTTAATTTTACCTCATATTTAGTTGAGGTGATTTAGACAGTGATTCTTCCTTTCTTCTGCAA CAATTTTATGTTTTTGTTATTTTTGGATCGCAGTTGGATGAGGATTCGAAAATCGTGAAGGTGGAGTTCTTTTTTGATGC AAATGAACTGATTGGAGGTCTTCTTAAAGGTCCTGAGTTTGATGGTAGTACTGAAGGTGGTGTTTCAAGTTGTCCTATTC TCAGGAACACTGGGTAGAGCAGCAAATGGAACTTTAAATTTGAACAGAACATATAATAATACAAGCAAATAAGGTAGTAA TAATACCCCTGTGTAACAAGCTTGGTGAATACTCAATTAGGAGTTCCTCAGATAAGCTCTTTGGCTAGATCTTCCATGTT CCCAAATTTGTTGGTGTATACATCATGGATTTTAGATAAATTAAGCAAATAGTTTTATTTTTTTCTGAGCATAGGGATAC TTAATGGACGAAAATCTTGTTATTTGTTAAAGCCGAACACATCATTATTTTGGTAGGACTAAGAGGTTTCTCCATTTACA ATACTCGAACGGACACCTTATAAAAATGAATTAAATATTTACAACTTAAACCAATTACTCGTTGTTCAATAGACTCTCTT GTTCAATTACAAAGTTAAAGGGACTTTAGGCCATGATCAGAATGTAATTATTGCCAGTTAGATTGGTTAGTTGCGGATCA GCTAGGTAGTTGTGATTAGTTCCATGACTAGCTATAACTATGATAATATAAAATGCACATTGTGCTCCACTAAAATCACT TTTCTTATTCCACGAAATTTTATATTCTTCTTTCTTGATCAAAAAAAAAAAAATTTTATATTCTTCTCCCATTACATTTA CTTGAAAATTCTCTTAGCCTGTCTCTTGACAACAGCACAATCATATTTGCCATCTACTACATCAAATTATATGAGTTTAT GCAGTTAGTTATCATTATATCTATCAGCTTCTGAGTCTTTTCAGGAGTCTTGCTATTCAATCTTTGAGAGTGTTTGCAAA TAACTTGAATAAAACTCTTAAAGACATGGAATCTAATTTGCAACTAAGCTTAACACTTCATCTATTCTTCTTGTTTCTTA TTTGCCTTGTTCCTCACATAATACGACTACCATCATCTTCATCTGGTTTGGCTTTACCTCTGCTACAGGAACAGATGAGG CTATTTAGTCCTTCAGCATCAACGTTTAGAACTTAATTATCATTATAAGAATACAATTTTGGCACTAGTAAGGAAATATT TTGCCTTTATTTGTATAATTTGTACATTACTTCCCATGTAATGCTATACTTTGGACGGCAAAGAAAAGACAAACCCAAGC TTTGGAATATCAACCCAATGCAACATTAACATATTATAGTAAGTTACTGAAAATAGAACCCTGCATCTTCTTCATCAATC ATGGCACCAACAGTGCCATTGACTCTTGAGACAGAAAAGCAACCTGTTACATATGTGCATACAGTTTTAGAGACAGGTCG CCTTCTTGCTTCATCCAGAGGGAACTCCCTAGCACCTGAATTTAATCATTCTCCTAAGTCTTCTGCTGCTTATGAATCCA TCCCTTCCCATTACCCAAAATCTTTTGACTACAACATTGTCATCACTGACAGGGAGCATTTTCACCGTTTCATCATAGTT TCAGTGGCAATAATATTTGCTATCACAGCAGTGATTTTATTGGTGCACTTTTTACCTCAGAAGAACAAGCATCATGGTTC TTCAATCAATCTCAAACTGGCAGTGAACCAAGCTCTAACCTTTTATGATGCCCAAAAATGTACTACTTCTCTAGTTTTCT TTGTATTGCACATTCTGCTTTCTTTCTTCTTGTAATTCAACATTGTTTTCTTTTGCCTTTTTTTGGTAGCTGGGTACTAT CCAAGGAACAGTCCAGTGAAATTTCGAGGAGACTCGGGATTACAGGATGGGAATTCAGCTAAGGCTAATCTTACTGGTGG ATTTTATGATTCTGGAAACAACATTAAGTTTACCTTCACCACTGCTTATACTATGACCTTGTTGAGTTGGAGTACAATGG AATATCAAGGTAAATATGCTGATATTGGTGAGCTTCACCATGTCAGGGAAATCATAAGATGGGGCAGTGATTACTTGCTC AAGGTGTTCATCCCCCCAGATTCAAAATCCGGATCCAACCTTACAATGTATTCCCAGGCAAGTTAATTAAATTTTGAAGG AAAAAACTTCAACATGATAGTTGGACCGGTATGACCGAGTAAGGTCATGGGCAAGGAGCTCGGGTCAAAATGATTTATAT CGTTGGCAAAATAAATAGATTTACTCTTTCAATCAACTGATCTAATAAGAGTTAGGTCAAGGGCATGGAACTCTATGAAC ACTAGTGTATGTATCGTTTGTGTTGTTGCGCAATGAAAAACTCACCAGCCACTTTCTTAATATTTATTAATTTTATTAAT GCGATAACTTCCCTTAACTTTCCATTTTTCAACCCATGTGTCATGTTTTAATGACAACAGTATATATATACCTGTGTCTA AGT
CDS sequence (LotjaGi1g1v0275600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCACCAAGTGTTGAAAAGGACAAGTACCGCACCTATTTGCACGGAGATGAAGAGAAGAACACCAAATGGAGATT TGGTGCCCCACCTAACTATGAGGCTGTGAATAAGTTATTTGAAGAAGGCAGAACCAAGGAATGGCCTCCTGGATCACTTG AAGAGCAGGTGCAGACTTTAGTTAAAAATTGGGAAATGGAATTTTTCCACAAAGTTGATATAAACGAGTTCAGATCAATT GATCCTAAGAAATTTACTTTCAGCCTAAATGGGAGAAAGCCTATGAGTTTGGAAGAGATAGGGGAACTTGGTGGGGGCTA CATTCCCATGTTGCAAACATCCCTACCTCAAAAACTGAGGCCTTATGACCCAGACAAAGAAACAAGATATTCATCTCACA TAGCTTTTACTACTACTTTACCAAGAGGGTTTGCTTTGGAGATTCTCCAAGTGTATTCTGGACCGCCAGTAATTGTCTAC AAGTTTAGACACTGGGGCTACATGGAGGGTCCTTTCAAAGGCCACGCTCCAACTGGAGAAAAAATTGAATTCTATGGAAT GGCTATTTTCACGTTGGATGAGGATTCGAAAATCGTGAAGGTGGAGTTCTTTTTTGATGCAAATGAACTGATTGGAGGTC TTCTTAAAGGTCCTGAGTTTGATGGTAGTACTGAAGGTGGTGTTTCAAGTTGTCCTATTCTCAGGAACACTGGGTAG
Protein sequence (LotjaGi1g1v0275600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPSVEKDKYRTYLHGDEEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWEMEFFHKVDINEFRSI DPKKFTFSLNGRKPMSLEEIGELGGGYIPMLQTSLPQKLRPYDPDKETRYSSHIAFTTTLPRGFALEILQVYSGPPVIVY KFRHWGYMEGPFKGHAPTGEKIEFYGMAIFTLDEDSKIVKVEFFFDANELIGGLLKGPEFDGSTEGGVSSCPILRNTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 236 | 233 | 1.0E-111 | – | |
| PANTHER | 4 | 236 | 233 | 1.0E-111 | – | |
| Gene3D | 121 | 215 | 95 | 9.1E-9 | – | |
| SUPERFAMILY | 134 | 209 | 76 | 2.02E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0275600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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