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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0278500 |
| Transcript ID | LotjaGi1g1v0278500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit beta; TAIR: AT2G41950.1 DNA-directed RNA polymerase subunit beta; Swiss-Prot: sp|Q2KN95|CYTSA_TETNG Cytospin-A; TrEMBL-Plants: tr|I3SE56|I3SE56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0278500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68140544..68143277) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGGTGAGAGTCAAATTATTTCTCACACACAAGATAGCTCACTAGCTTGTCCCTTCTGCTCTAACCTATCCCCATGG TTGAACAGCACCATCTGCATCTTCTCCCACACTCCCACCATTGAACACTTCAATCTGCAACAACTCTGAACCAGATATCA GATAGCAACACTTCAATCACAAACTCAACTCTGAAACTCTGTTCATTCTCCCATGAATTCGCTTTCTTTAGGTTCCTTCA CTCTCACATACCCACCACCATGCAAGTTCCGCACCCATCTTCACCCTAATTTCCACAATCTCTATATCAAGGGTGCCAAT TCATCTTCTGTTTCTCTGAAACCAAAACCCTCTGTTGCACCCACTTCGCTGCGAGCGTCAAAATCAAATTTTGATGCTCC GGTCTCACTCCCTGAAGGGAATGCATCGTTTGTTCCCATTGAGGAAATCATTGAGAAGGATTGGTCTGTGCTTTATCACG GTGACCCCAGTGCTGACAACCGCATTGTATCAGCTGGGAAGGTTGAGGAGAGTTCAAGGGTTTTGGTTTCAACTGGGTCT GAAGATTTTGTGGATTGCTTGATGGGGTTTTCTCCCTTCAAGTCCTTGCTTGTTGTTCATGACTCACTTTTGATATTGGC TTGTATCAAAGAGAAAGATGATGGTATTAAGTGTTGGCAAGGAGAGATTACTCTTGTTCCTGAGAAATGGGCTCCCTTTG ATGTTGTGTTCCTTTATTTCCTTCCTGGGTTGCCCTTTAAACTTGATGAGATTCTGGGATCTTTGGCTAACAAATGTTCA CCTGGTGAGTTTTTTTTTTTGGTAACTCTGTAATCAGTTAGCAAATTGTTCTTTCCTGTTACTGTTGTTCATTTTATGGC TTACTGGATGGTAGAAAACTAAGTTAGCCTGATTCTACTGTTTATAGTTTTGAATATGTTGTGAACTTCATTTAAGTATA AGCCATGAAGCATACTTAATTTAATACATTATTTTGCCTTTCTTGATGCTGAGTAATGTAATGTGTTTCTTTGTAACTAT TTTCATGAAGCTATGAGTAGTAGGCTAGTAGCTTATTTACTCCCAAGACAAGAAATTGTGCATACTGAAATATCTGCATC TATTATGACATCCTGGCTCTTAATTTTCCTCGAGCTATGTTTTCATGAGATGATAATTTTGAATGTGTAATTAATTTTAC TAGTTACATGTAAAATGTGAAAGCAATGCACCATATAAGGCTGTGGTGCAACAAATTTAGCATGTCTGGATCAGCTTTAC TTTCTTCAGAATCAATTCCGACAACGGGACTCATAGAAGCTTCTCCCCATTTTGGCTTTAGAATGATTCATAGAAGGATT TTCAAACACGCACACTTCATGTGGATTTTCTTAGTTGTCTATATATTTCTATTTGGACTCCTTTGAAATTTGGATCAGTG CTCTCAAGATGTTTTCTTCTTTTAAGATTTTGGATTTGTGTGTAGGTGGAAGGGTGATCATCAGTCATCCCCAAGGGAGA CAAGCACTTGAACAGCAGCGAGAACAGTACCCAGAAGTAGTAGTTTCTGACCTACCTGATAAAACATATTTACAAACGGC TGCAGCTGCCAATTCTTTTGATGTGGCTGAATTTGTGGACGAACCTAGCTTTTATTTAGCTGTTTTGATCTGCTCCAGGG CTTAAAAACTAGAGAAGATCCATTTTAATACACAATTTGATTGGACTTTTGATTTGATTTTTCTCTTTTTGACTGTTAGC TAGAACTTTTGGATGAAGAGAATTTAAATTATACACGATTTAATTTGATAAGTATGTGAGGCTTTCCCTTACTTGTATAA CCGTGGCATCCGGAAGCTCCTTTACCCTATATAATCTTTAATTTTGGGGTTGTATACCTGATATGATACTTTCTTTCATA CAAGCAACTTTGATGATGCCACCAACTTCATTTCATTGTTTTGGTTTTGGCATCTGCGGTTTGTTGCATATTAAGCTCCT CGTTCCTTATATAGGGTCAGATATTCACAAGGCTGCCACATTTTTTTTGTCGAAGGTAATTCGATTAACGTCACGAGAGC AGTTAAACGGCACTTACATCCAATACTTAGAGGGCAAATCTCATATGAACCCAACAAAAGAGCAATACCCTAATGCTTTA ACTAAAACATCACATGTGATAGGGTGCTTGTCTGCTCTAACTAAAACATCACCAGTGATATAGGGTGCTTGTCTGAGGTT CACAAATCAATGAAAAATCAAAGTTTGAGCAAACAAAGGCATCCTAACAAATCAACTTCAAGCAGACTTGCCACAAACTA TGCCTCTAGCTAATATTCTTCTTGCATTCTGTCTTTTTCGTTCAAAGCTCCTATATTCAGGATCCGCCAGTTCTATCGGA GTGGAACACCTGTGAGGGAGACTAATTACAAAACAAGAGACTCAGCAGCACCAAAACAGAAGCTCTAAAGAGGTAGGTTA AGAGTCTAAATCCGATTGAGAGATTAAACCGAAAATGGGTGGATGAAAGAAGGGAGGAAATAGAGAAAAGTTTAAAGGAA ATGGTGGAGAGAATGAGGTTGAATGATGGTGGCTAAAGGAAGAAGATAGAAGACATGAGAAGTACAAATGAAAATCTTAT TGAGAACTTCGAAACACCTACATGAAGTGAGTAGGGGATCCCCCATAAGGAGGGGGGTGGTGAAACAAGAAGGGCTCTCA CAAAGGTTTACCAC
CDS sequence (LotjaGi1g1v0278500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCGCTTTCTTTAGGTTCCTTCACTCTCACATACCCACCACCATGCAAGTTCCGCACCCATCTTCACCCTAATTT CCACAATCTCTATATCAAGGGTGCCAATTCATCTTCTGTTTCTCTGAAACCAAAACCCTCTGTTGCACCCACTTCGCTGC GAGCGTCAAAATCAAATTTTGATGCTCCGGTCTCACTCCCTGAAGGGAATGCATCGTTTGTTCCCATTGAGGAAATCATT GAGAAGGATTGGTCTGTGCTTTATCACGGTGACCCCAGTGCTGACAACCGCATTGTATCAGCTGGGAAGGTTGAGGAGAG TTCAAGGGTTTTGGTTTCAACTGGGTCTGAAGATTTTGTGGATTGCTTGATGGGGTTTTCTCCCTTCAAGTCCTTGCTTG TTGTTCATGACTCACTTTTGATATTGGCTTGTATCAAAGAGAAAGATGATGGTATTAAGTGTTGGCAAGGAGAGATTACT CTTGTTCCTGAGAAATGGGCTCCCTTTGATGTTGTGTTCCTTTATTTCCTTCCTGGGTTGCCCTTTAAACTTGATGAGAT TCTGGGATCTTTGGCTAACAAATGTTCACCTGGTGGAAGGGTGATCATCAGTCATCCCCAAGGGAGACAAGCACTTGAAC AGCAGCGAGAACAGTACCCAGAAGTAGTAGTTTCTGACCTACCTGATAAAACATATTTACAAACGGCTGCAGCTGCCAAT TCTTTTGATGTGGCTGAATTTGTGGACGAACCTAGCTTTTATTTAGCTGTTTTGATCTGCTCCAGGGCTTAA
Protein sequence (LotjaGi1g1v0278500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSLSLGSFTLTYPPPCKFRTHLHPNFHNLYIKGANSSSVSLKPKPSVAPTSLRASKSNFDAPVSLPEGNASFVPIEEII EKDWSVLYHGDPSADNRIVSAGKVEESSRVLVSTGSEDFVDCLMGFSPFKSLLVVHDSLLILACIKEKDDGIKCWQGEIT LVPEKWAPFDVVFLYFLPGLPFKLDEILGSLANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAAAAN SFDVAEFVDEPSFYLAVLICSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 262 | 244 | 4.3E-96 | – | |
| SUPERFAMILY | 144 | 251 | 108 | 2.47E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0278500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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