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LotjaGi1g1v0281000.1

Overview

Field Value
Gene ID LotjaGi1g1v0281000
Transcript ID LotjaGi1g1v0281000.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Polypyrimidine tract-binding-like protein; TAIR: AT5G53180.1 polypyrimidine tract-binding protein 2; Swiss-Prot: sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2; TrEMBL-Plants: tr|A0A0B2QUC1|A0A0B2QUC1_GLYSO Polypyrimidine tract-binding protein like 2; Found in the gene: LotjaGi1g1v0281000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:68513557..68519884) extracted from Lotus japonicus Gifu genome v1.2.

GCCAAACACGCCGCCGAGGGGAATTTAATATCATAATAATAATAATTTTTGTAAACACAAAATTGTCATCTCATCTAACC CCACGCGGCGCCAACAAACGATAAACGCGAAGTTGATAACGGAGAAGGCTAATCTCATCTCATCTTTTTTCCCCCTTTTC TCGAAAACCCTAATTCCTCAAAAAATCACAGACCTCTTCTCCTCCTCTTCCTCCTCTCAATTCTCTCAGGTAGTGAATTT TCCCCAACACTTTCTGTGTTCTTCTGCTTTTTGATTCACGTCGATCTCGAAAACCAACAGCATCACGAACATCAAATAGT TTCAATTCCATTAGCGATTTCTTCTGAGCTACCTCCTTTGATTCGGATTAGGTTTCAATTGCATTTGCACTTTGTTGTTA CCCCTAAAATGGTGTTGTTTTCCCCTTTTGTTTAGTTTTTTTTAATGTTATTGCATAATGGCATCTGAAAATGTCAACCC TGTTACCCTAGTTGTGGAATGATTAAGGTTTGGTTGTTGGGTCTTTATGAAACATGTTAGTTGAATTATGAGTAAATGAA TATCCAGTTGTTGGAAATTGTTTTGAGAAATACAGTTATGCAGTAATATGCTTATGTTGCTTTGTGGGATACCTAATTGT TAAATGGTTATTGTTTTAGGTTTATTGTCTGAAATGGCATCGGTGTCTACTCAGCCACAGTTCCGATACACTCAGCCACC GTCGAAGGTGCTTCATTTGAGAAACTTGCCATGGGAATGCACAGAGGAGGAACTTATTGAACTTGGAAAGCCGTTTGGTA AAGTTGTCAACACCAAATGCAATGTTGGAGCTAATCGAAATCAAGCTTTTATCGAATTTGTGAGTGGATTTAGTTTTCCT TTTGTCTCTGTACTGATTGTTAGTTACAAGTCATTCATATATGCTATTTGCTTCCATGATCTCCAGGCAGATTTGAATCA AGCTATTGCGATGATATCCTACTATGCCTCATCATCGGAGCCTGCGCAAGTACGAGGGAAAACTGTGTATCTGCAATATT CAAATAGGCAAGAAATCGTGAATAACAAAACTGCTGCTGATGTTCCTGGGAATGTACTCTTAGTAACGATTGAGGGTACA GATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGTAAGCAGTTGCATGTGTATATTAGTTATATGCTAACACTGTTA TGGTGAGGATGCTGGTCACTTAGTTTTGTTATTAGGTTTTTCTTTGTCAGGCTATGGAAAAGTTGTTGACATGTATGTAA ATGAATCAGCAGGCCCATGTCAAGGCAATATCTTCAATGGCAGCTTAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTTGT CTCCTTTTCTCCTTTCCTTAACACTACCTCTTTCTTCCCTATTCTCTCCCTAAACTCCTGCCATTCTTGTAGTTTAGGAT GTTACCATTCTTTTTTCATTTTTGCATCCGTGCTTTATTGACTCATCATCTGCATTTTACTTTTACCTAGATTTAGTCAC CAAATTCTGTGCTATGCAGTTTTTTTTGGTGTTCCAACTATTGTTTGGCTGTTTTAGATATTTTTAAAGTCTTATCAGAT AATAGTAGGCTAAGTTCCCTTCTAACCTTGGCAATGGAATGCTGAGTTTTCGCATAATTTATAGTTGAGGAGGTCATTTA CTCGCAAATCCTTTGTTTAAAACTTTGTATCAACTAATCAAGCATTGAAGTGAATGATACCATTACCTTCAAATTCTTAT AAGTATTATTAGAGAATACAGATATATATTCTTGGCAGTTATTCATCTAAGAAAACTGTGATTTGGATTACATCAGTTGG ATAAACTATACCCCCCCCCCCCCCCCCCAATTTTTGCAGTTAAAGAGAAAACTGTTGCTATTGTTTTGATAGTTTATTGA CTTTTAATCTTGCTCAGTGCTTACAAGTTATAATATTTTAGTTCCTCTGACGCTAATGTATTCAACAAGAGCATTTTTCT ATTAGCATTCCAAGAGATATATTCTGAAATTTTAGACTTGTTAGTGCTCCCACTTTTCTATTGTATACAACTTTAGAAGG CACAAGACACTGTTCATTTTGTGCTACAGATTTATCTTAGTAAATATCATCTTGAAAGTATATTGTTTACTCATGCAGGT CTTTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGTTTAGTGATAATCATCCC TTGTTTTTTATTCCCTTATTTAATCTAATGAGCACAACCTTATTCTATATAAAACTGTGTAGGCACTGGTGCAATTCTCT GATGCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGGTAACAATTATATATTTATATTGT TTGACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTTCATACTACATACGTTCTTAGATGGGTT AACTGTCAGCGGATTTGCTGTTGTATATTCACTCTTCCGCAGTTCTTTGAGTTTTTACATTTAACTTAAGATGGAGTTTA TAGACTTTAACAATTATATTATGTTTTACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTGCAT ATGTTCTCATATGGGTCAACTACCAACAGATTTACTGTTGCGTACTTTTGTACATTCACACTTCTTCAGTTCTTTGAGTT TTTACAATTAACTTAATATGGACTTTATAAACATTGTTTTTTGCACTTGATAGCAATTCTATGGATCGTTGAATATAGCA AATATTATAAGCTACATAATGTCAACCGGATCTTCTTGAATAAATGAATTATAAAGTGCTAAGTTTGAATCAGACTGCAA AATGCAAATTGGTTGTGATTGGAACATTAATAATTTCATTTTATTTCTCAATTTTTGTTATTTCTGATCATTGATCCTTA ATTTCACCCTGGTATCAGCTATCTGCTCCCTGAGCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAG ATTTAACTGTTAAGTTTCAAAGCCACAGAAGCAGGTATTGCTTATTTCTTTTGTATGTCTTGCTTATTCGAAACCAAGTT TTGGCAGAACTTTTTATTTTATGTGCCTATAGGCTATAGTATATTCTTTCCTTATCCTGTTGGTTTTTGGTTTATTCCTT GTTTTGTATATTGGTTCTATATCTCACCCTTCATATAACCTTTTATCCCTATTTCGTCCAATGATATGATTTTTTCGATT GGTTACTTTTTCTTGCTCCAGAGACTATACAAATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGG TAATATTTTGACTATTAAGATCTATGTGTTAAGTATCAGCATGACATCTATTGTTACCTGCTTGTTTGTACATTCAAGCC TTCTAAATTGCTTGTTTTAACTTGAATGCTTACTTCATGGCATCATGCACATCATTTAGGTTTATGCCTTACTGTCACGG GTTTCCTTTGCATGCTGATTTGCTTATCGAGTTTTTTTCCCCTGTTTAAAAATTCATTTATAATTTTTGCAGGTCATGGT TGGTTTGGATGGTAAAAAACTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACAT TGGATGTCTTACATATGGTACTTTAATCTTCACAGCCCATTTTTTCTTTATTGATTAACATATGGTACTTTAATCTTCAC AGCCCATTTTTTCTTTATTGATTAACAATACTGTTTAGTTAATAATATCCTGCCTTCTTTTTTCTTTCTTTTGTGCCTCT CTGTAGGTATTCTCTGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCA ATATCCAGGTTAGGTTCTTTGAAAAAATTTCCTCATCATTGCTTGGATAGTTAGATATATTATGTTTGTACTTCCGAATG GTATTTGTGCAAACTGGGTGGGTATCAATTGTTTTCCATGTCTCTCAGTTTTAAACATTACATGTGCGTCTATGTAGCCT GATTCTATGAAAATCAAGCATTTATGGTTTCAACTTACAAATTGGTGAGGAAAATGGCAAGTTTTACTGCACAAATGTCC ATTGCTGAGATTGATTTATTGATTCTGTATAGAAATATTGAAGAAAGATACTTCTAGCTGCATCTTCTTGTTCTTTTGAA CTTCCCTTTAGATTCTGTAGATATGATTGTTCTCTTAAGGAGTATGTGTCTGTTTCTTGCTGGGAATCTCCTCAGTAGGG AATATGATTATATTTGATTGGTATAATAATGATGATTCAAGTGCAATATGCATGCATTTTTATGTCAGTGACCCAGTGAG TAAAACATGGGGGATTTTGACTTTATCAATAGTAGAAAGCTTTTTAACGGCCTTGTTTTGTTTTATACTATCATTATAAG CTTGAGAACTGAGATAGTGATATGCCATGGGCTTGCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGAC ACTGCATTTACGATGGAGGCTTTTGCAAGCTTCACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTAAACAAT CCTATCTAGAGTGAGGGTTGATCTTACTATAAATGCTTGAAAGAGCATATGATTTGGAGATGTCTTAACTCTTAAACCAA TATGATAAAAGTAAAACAACGGTCCAGTTGTTATACTTATATGAGCAAACAAAGCCAATTCTCTTTGTTCATGGATATAC TTAGTCATATATACCCAAAACTTAAGAATCTAGTTTTGGAGTTTGGCTTTCCTTTCTGAGATGATCACTGAAAATCCTTC AACTGAAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTACTATA ATTACAAAAAATAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGT ACTATAATTACAAAAAATACATTATACCGGTCTCATAAAATAAAATTATGATTTGCTGTTCAGTATTATATTTTCTTTTT TATGCTGGGACTACATTTATCGTAGACTGTAAAATCATTTTTTATGGTTGCTGCTGGTTGGAACCTATTTGTCTCTTGAA AGAATTGCACTTATATTATAACTTCAATTGAACTTTAATTTCAAGGACCATTTTGTGTAATTACAGGTCAATAATGATAG AAGTAGAGACTACACCATTCCCACTACACCTGTTGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGG TGGGTCCTGCTCAGCAATACAATGGGTCTCAGTATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGG TGGGGAGCACCAGCACAGTCTATGCCAATGCAGATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAAT GGCCCCTGCAATGCAATTTCCAAGTCACAGCTCCCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTC AATAGCATGCATCTCGGATGTCTCATGTATCCATTTCCATAAGCGGCAGCTGGTTTCTGCAGAAGTGAGGATTACCATTT TATATTCGGGTTCACATCTGACCTCCCTTTAATGGTGCTATTCTGAACCTCAAAAGGACCTCCATTTTATTACTTTTCAT GTTTTGGATGTGAAAGTCTGCATGCAATTGGTAAAAACACTTAGTTGGCTGTTGGCTCAACTACGAAACGAAATGTTCTG TTGTTTCTGTTTTGGTCTCTATGGATTAGGTGTTTATATAATGAACTTGTGTTTTGGAATTGTATTTGGGAAATGATTCT AATACTAATTAATCTCTTGTGGATGGTGCGCTAGTCTCACACTTTCACTTGCTCTTCGTTTTTAGATTGTAAATAGAGGT TAGCTTGTTTACAAATTTTTTTCCTTAAAATGTCATTAACGTGATTAATGATTAATAATGGATGAAAGAGTAGTGTTATT ATTATTATTATTTTGGTTAAAAGAGTAGTGTTATTAAACTTGAATGAATGTATTATGTTTGAGTTAAATATTTATATTAA GAAAAATACTTCGTGCTTGCTAACATGTAAAGGAAAGAAAAGAATGAAGAAAATCAAAACATGGGTGAGGGTTTCAGTTG AAGCAAAACAGTTTTTTTATTAATGGGAATCACATATTTTGGCTTTCAATTTTGAAATCAAGACTTCTATTTTAATGATT TGATTAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCGGTGTCTACTCAGCCACAGTTCCGATACACTCAGCCACCGTCGAAGGTGCTTCATTTGAGAAACTTGCCATG GGAATGCACAGAGGAGGAACTTATTGAACTTGGAAAGCCGTTTGGTAAAGTTGTCAACACCAAATGCAATGTTGGAGCTA ATCGAAATCAAGCTTTTATCGAATTTGCAGATTTGAATCAAGCTATTGCGATGATATCCTACTATGCCTCATCATCGGAG CCTGCGCAAGTACGAGGGAAAACTGTGTATCTGCAATATTCAAATAGGCAAGAAATCGTGAATAACAAAACTGCTGCTGA TGTTCCTGGGAATGTACTCTTAGTAACGATTGAGGGTACAGATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGTCT TTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGCACTGGTGCAATTCTCTGAT GCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGCTATCTGCTCCCTGAGCATGTAGGACC ATGTACACTCAGGATCACATATTCTGGACATTCAGATTTAACTGTTAAGTTTCAAAGCCACAGAAGCAGAGACTATACAA ATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGTCATGGTTGGTTTGGATGGTAAAAAACTGGAG ACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACATATGGTATTCTC TGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATACTC AGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACACTGCATTTACGATGGAGGCTTTTGCAAGCTTCACATCTCATAT TCACGTCACACAGATCTTAGTATAAAGGTCAATAATGATAGAAGTAGAGACTACACCATTCCCACTACACCTGTTGTGAA CACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGTGGGTCCTGCTCAGCAATACAATGGGTCTCAGTATACTC CAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGTGGGGAGCACCAGCACAGTCTATGCCAATGCAGATGCAC AATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATGGCCCCTGCAATGCAATTTCCAAGTCACAGCTCCCGACA ACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSE PAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD AETATAAKDALDGRNIPSYLLPEHVGPCTLRITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAMDGNGQVMVGLDGKKLE TESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAIVAKEALEGHCIYDGGFCKLHISY SRHTDLSIKVNNDRSRDYTIPTTPVVNTQPSILGQQPGPLVGPAQQYNGSQYTPISSQSLTPQSQAGWGAPAQSMPMQMH NNMYVPPGTMPPQMAPAMQFPSHSSRQPTGSLPPYGSGRPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15592:SF29
1 413 413 1.2E-249 –
PANTHER
PTHR15592
1 413 413 1.2E-249 –
Gene3D
G3DSA:3.30.70.330
5 110 106 2.6E-25
IPR012677
SUPERFAMILY
SSF54928
7 101 95 3.63E-19
IPR035979
CDD
cd12686
16 96 81 1.11998E-57
IPR034792
ProSiteProfiles
PS50102
18 96 79 11.946
IPR000504
SMART
SM00360
19 92 74 1.9E-9
IPR000504
Pfam
PF00076
22 73 52 2.7E-8
IPR000504
CDD
cd12691
110 204 95 9.95687E-57
IPR034793
Gene3D
G3DSA:3.30.70.330
111 222 112 7.3E-28
IPR012677
SMART
SM00360
112 186 75 4.5
IPR000504
SUPERFAMILY
SSF54928
125 218 94 1.09E-10
IPR035979
Pfam
PF00076
129 179 51 4.7E-5
IPR000504
Gene3D
G3DSA:3.30.70.330
242 348 107 1.1E-30
IPR012677
CDD
cd12690
243 339 97 5.34052E-66
IPR034794
Pfam
PF11835
243 321 79 5.6E-7
IPR021790
SMART
SM00360
247 317 71 0.6
IPR000504
SUPERFAMILY
SSF54928
249 343 95 8.73E-16
IPR035979
MobiDBLite
mobidb-lite
340 391 52 - –
MobiDBLite
mobidb-lite
404 441 38 - –
MobiDBLite
mobidb-lite
418 434 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0281000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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