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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281000 |
| Transcript ID | LotjaGi1g1v0281000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT5G53180.1 polypyrimidine tract-binding protein 2; Swiss-Prot: sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2; TrEMBL-Plants: tr|A0A0B2QUC1|A0A0B2QUC1_GLYSO Polypyrimidine tract-binding protein like 2; Found in the gene: LotjaGi1g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68514280..68519211) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCGGTGTCTACTCAGCCACAGTTCCGATACACTCAGCCACCGTCGAAGGTGCTTCATTTGAGAAACTTGCCATG GGAATGCACAGAGGAGGAACTTATTGAACTTGGAAAGCCGTTTGGTAAAGTTGTCAACACCAAATGCAATGTTGGAGCTA ATCGAAATCAAGCTTTTATCGAATTTGTGAGTGGATTTAGTTTTCCTTTTGTCTCTGTACTGATTGTTAGTTACAAGTCA TTCATATATGCTATTTGCTTCCATGATCTCCAGGCAGATTTGAATCAAGCTATTGCGATGATATCCTACTATGCCTCATC ATCGGAGCCTGCGCAAGTACGAGGGAAAACTGTGTATCTGCAATATTCAAATAGGCAAGAAATCGTGAATAACAAAACTG CTGCTGATGTTCCTGGGAATGTACTCTTAGTAACGATTGAGGGTACAGATGCACGCCTTGTTAGCATTGATGTTTTGCAC TTGGTAAGCAGTTGCATGTGTATATTAGTTATATGCTAACACTGTTATGGTGAGGATGCTGGTCACTTAGTTTTGTTATT AGGTTTTTCTTTGTCAGGCTATGGAAAAGTTGTTGACATGTATGTAAATGAATCAGCAGGCCCATGTCAAGGCAATATCT TCAATGGCAGCTTAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTTGTCTCCTTTTCTCCTTTCCTTAACACTACCTCTTT CTTCCCTATTCTCTCCCTAAACTCCTGCCATTCTTGTAGTTTAGGATGTTACCATTCTTTTTTCATTTTTGCATCCGTGC TTTATTGACTCATCATCTGCATTTTACTTTTACCTAGATTTAGTCACCAAATTCTGTGCTATGCAGTTTTTTTTGGTGTT CCAACTATTGTTTGGCTGTTTTAGATATTTTTAAAGTCTTATCAGATAATAGTAGGCTAAGTTCCCTTCTAACCTTGGCA ATGGAATGCTGAGTTTTCGCATAATTTATAGTTGAGGAGGTCATTTACTCGCAAATCCTTTGTTTAAAACTTTGTATCAA CTAATCAAGCATTGAAGTGAATGATACCATTACCTTCAAATTCTTATAAGTATTATTAGAGAATACAGATATATATTCTT GGCAGTTATTCATCTAAGAAAACTGTGATTTGGATTACATCAGTTGGATAAACTATACCCCCCCCCCCCCCCCCCAATTT TTGCAGTTAAAGAGAAAACTGTTGCTATTGTTTTGATAGTTTATTGACTTTTAATCTTGCTCAGTGCTTACAAGTTATAA TATTTTAGTTCCTCTGACGCTAATGTATTCAACAAGAGCATTTTTCTATTAGCATTCCAAGAGATATATTCTGAAATTTT AGACTTGTTAGTGCTCCCACTTTTCTATTGTATACAACTTTAGAAGGCACAAGACACTGTTCATTTTGTGCTACAGATTT ATCTTAGTAAATATCATCTTGAAAGTATATTGTTTACTCATGCAGGTCTTTTCGGCCTTTGGATTTGTGCATAAGATTAC AACATTTGAGAAGACAGCAGGATTCCAGGTTTAGTGATAATCATCCCTTGTTTTTTATTCCCTTATTTAATCTAATGAGC ACAACCTTATTCTATATAAAACTGTGTAGGCACTGGTGCAATTCTCTGATGCAGAGACTGCCACAGCTGCAAAGGATGCT TTGGATGGAAGAAACATACCCAGGTAACAATTATATATTTATATTGTTTGACAATGTTTTTAGTTTACTGCTGTGGATCA TATGATGGTCTAGTGTGGTTCATACTACATACGTTCTTAGATGGGTTAACTGTCAGCGGATTTGCTGTTGTATATTCACT CTTCCGCAGTTCTTTGAGTTTTTACATTTAACTTAAGATGGAGTTTATAGACTTTAACAATTATATTATGTTTTACAATG TTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTGCATATGTTCTCATATGGGTCAACTACCAACAGATTT ACTGTTGCGTACTTTTGTACATTCACACTTCTTCAGTTCTTTGAGTTTTTACAATTAACTTAATATGGACTTTATAAACA TTGTTTTTTGCACTTGATAGCAATTCTATGGATCGTTGAATATAGCAAATATTATAAGCTACATAATGTCAACCGGATCT TCTTGAATAAATGAATTATAAAGTGCTAAGTTTGAATCAGACTGCAAAATGCAAATTGGTTGTGATTGGAACATTAATAA TTTCATTTTATTTCTCAATTTTTGTTATTTCTGATCATTGATCCTTAATTTCACCCTGGTATCAGCTATCTGCTCCCTGA GCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAGATTTAACTGTTAAGTTTCAAAGCCACAGAAGCA GGTATTGCTTATTTCTTTTGTATGTCTTGCTTATTCGAAACCAAGTTTTGGCAGAACTTTTTATTTTATGTGCCTATAGG CTATAGTATATTCTTTCCTTATCCTGTTGGTTTTTGGTTTATTCCTTGTTTTGTATATTGGTTCTATATCTCACCCTTCA TATAACCTTTTATCCCTATTTCGTCCAATGATATGATTTTTTCGATTGGTTACTTTTTCTTGCTCCAGAGACTATACAAA TCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGTAATATTTTGACTATTAAGATCTATGTGTTAAG TATCAGCATGACATCTATTGTTACCTGCTTGTTTGTACATTCAAGCCTTCTAAATTGCTTGTTTTAACTTGAATGCTTAC TTCATGGCATCATGCACATCATTTAGGTTTATGCCTTACTGTCACGGGTTTCCTTTGCATGCTGATTTGCTTATCGAGTT TTTTTCCCCTGTTTAAAAATTCATTTATAATTTTTGCAGGTCATGGTTGGTTTGGATGGTAAAAAACTGGAGACTGAGAG TAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACATATGGTACTTTAATCTTCAC AGCCCATTTTTTCTTTATTGATTAACATATGGTACTTTAATCTTCACAGCCCATTTTTTCTTTATTGATTAACAATACTG TTTAGTTAATAATATCCTGCCTTCTTTTTTCTTTCTTTTGTGCCTCTCTGTAGGTATTCTCTGCTTTTGGACCTATCCAA AAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGGTTAGGTTCTTTGAAAAAATTTCCT CATCATTGCTTGGATAGTTAGATATATTATGTTTGTACTTCCGAATGGTATTTGTGCAAACTGGGTGGGTATCAATTGTT TTCCATGTCTCTCAGTTTTAAACATTACATGTGCGTCTATGTAGCCTGATTCTATGAAAATCAAGCATTTATGGTTTCAA CTTACAAATTGGTGAGGAAAATGGCAAGTTTTACTGCACAAATGTCCATTGCTGAGATTGATTTATTGATTCTGTATAGA AATATTGAAGAAAGATACTTCTAGCTGCATCTTCTTGTTCTTTTGAACTTCCCTTTAGATTCTGTAGATATGATTGTTCT CTTAAGGAGTATGTGTCTGTTTCTTGCTGGGAATCTCCTCAGTAGGGAATATGATTATATTTGATTGGTATAATAATGAT GATTCAAGTGCAATATGCATGCATTTTTATGTCAGTGACCCAGTGAGTAAAACATGGGGGATTTTGACTTTATCAATAGT AGAAAGCTTTTTAACGGCCTTGTTTTGTTTTATACTATCATTATAAGCTTGAGAACTGAGATAGTGATATGCCATGGGCT TGCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACACTGCATTTACGATGGAGGCTTTTGCAAGCTTC ACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTAAACAATCCTATCTAGAGTGAGGGTTGATCTTACTATAAA TGCTTGAAAGAGCATATGATTTGGAGATGTCTTAACTCTTAAACCAATATGATAAAAGTAAAACAACGGTCCAGTTGTTA TACTTATATGAGCAAACAAAGCCAATTCTCTTTGTTCATGGATATACTTAGTCATATATACCCAAAACTTAAGAATCTAG TTTTGGAGTTTGGCTTTCCTTTCTGAGATGATCACTGAAAATCCTTCAACTGAAGATCAACAGGAATCCCCTCATTATCA TATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTACTATAATTACAAAAAATAGATCAACAGGAATCCCCTCA TTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTACTATAATTACAAAAAATACATTATACCGGTCT CATAAAATAAAATTATGATTTGCTGTTCAGTATTATATTTTCTTTTTTATGCTGGGACTACATTTATCGTAGACTGTAAA ATCATTTTTTATGGTTGCTGCTGGTTGGAACCTATTTGTCTCTTGAAAGAATTGCACTTATATTATAACTTCAATTGAAC TTTAATTTCAAGGACCATTTTGTGTAATTACAGGTCAATAATGATAGAAGTAGAGACTACACCATTCCCACTACACCTGT TGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGTGGGTCCTGCTCAGCAATACAATGGGTCTCAGT ATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGTGGGGAGCACCAGCACAGTCTATGCCAATGCAG ATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATGGCCCCTGCAATGCAATTTCCAAGTCACAGCTC CCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCAATAG
CDS sequence (LotjaGi1g1v0281000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGGTGTCTACTCAGCCACAGTTCCGATACACTCAGCCACCGTCGAAGGTGCTTCATTTGAGAAACTTGCCATG GGAATGCACAGAGGAGGAACTTATTGAACTTGGAAAGCCGTTTGGTAAAGTTGTCAACACCAAATGCAATGTTGGAGCTA ATCGAAATCAAGCTTTTATCGAATTTGCAGATTTGAATCAAGCTATTGCGATGATATCCTACTATGCCTCATCATCGGAG CCTGCGCAAGTACGAGGGAAAACTGTGTATCTGCAATATTCAAATAGGCAAGAAATCGTGAATAACAAAACTGCTGCTGA TGTTCCTGGGAATGTACTCTTAGTAACGATTGAGGGTACAGATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGTCT TTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGCACTGGTGCAATTCTCTGAT GCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGCTATCTGCTCCCTGAGCATGTAGGACC ATGTACACTCAGGATCACATATTCTGGACATTCAGATTTAACTGTTAAGTTTCAAAGCCACAGAAGCAGAGACTATACAA ATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGTCATGGTTGGTTTGGATGGTAAAAAACTGGAG ACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACATATGGTATTCTC TGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATACTC AGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACACTGCATTTACGATGGAGGCTTTTGCAAGCTTCACATCTCATAT TCACGTCACACAGATCTTAGTATAAAGGTCAATAATGATAGAAGTAGAGACTACACCATTCCCACTACACCTGTTGTGAA CACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGTGGGTCCTGCTCAGCAATACAATGGGTCTCAGTATACTC CAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGTGGGGAGCACCAGCACAGTCTATGCCAATGCAGATGCAC AATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATGGCCCCTGCAATGCAATTTCCAAGTCACAGCTCCCGACA ACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCAATAG
Protein sequence (LotjaGi1g1v0281000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSE PAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD AETATAAKDALDGRNIPSYLLPEHVGPCTLRITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAMDGNGQVMVGLDGKKLE TESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAIVAKEALEGHCIYDGGFCKLHISY SRHTDLSIKVNNDRSRDYTIPTTPVVNTQPSILGQQPGPLVGPAQQYNGSQYTPISSQSLTPQSQAGWGAPAQSMPMQMH NNMYVPPGTMPPQMAPAMQFPSHSSRQPTGSLPPYGSGRPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 413 | 413 | 1.2E-249 | – | |
| PANTHER | 1 | 413 | 413 | 1.2E-249 | – | |
| Gene3D | 5 | 110 | 106 | 2.6E-25 | ||
| SUPERFAMILY | 7 | 101 | 95 | 3.63E-19 | ||
| CDD | 16 | 96 | 81 | 1.11998E-57 | ||
| ProSiteProfiles | 18 | 96 | 79 | 11.946 | ||
| SMART | 19 | 92 | 74 | 1.9E-9 | ||
| Pfam | 22 | 73 | 52 | 2.7E-8 | ||
| CDD | 110 | 204 | 95 | 9.95687E-57 | ||
| Gene3D | 111 | 222 | 112 | 7.3E-28 | ||
| SMART | 112 | 186 | 75 | 4.5 | ||
| SUPERFAMILY | 125 | 218 | 94 | 1.09E-10 | ||
| Pfam | 129 | 179 | 51 | 4.7E-5 | ||
| Gene3D | 242 | 348 | 107 | 1.1E-30 | ||
| CDD | 243 | 339 | 97 | 5.34052E-66 | ||
| Pfam | 243 | 321 | 79 | 5.6E-7 | ||
| SMART | 247 | 317 | 71 | 0.6 | ||
| SUPERFAMILY | 249 | 343 | 95 | 8.73E-16 | ||
| MobiDBLite | 340 | 391 | 52 | - | – | |
| MobiDBLite | 404 | 441 | 38 | - | – | |
| MobiDBLite | 418 | 434 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0281000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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