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LotjaGi1g1v0284800.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0284800
Transcript ID	LotjaGi1g1v0284800.1
Lotus japonicus genome version	Gifu v1.2
Description	Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp\|Q75HY5\|RSLE3_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 3; TrEMBL-Plants: tr\|A0A061E671\|A0A061E671_THECC T6D22.19, putative; Found in the gene: LotjaGi1g1v0284800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:69275180..69276434) extracted from Lotus japonicus Gifu genome v1.2.

CTTGATTTCTGGAACATCATATCCTACATCCAACTTGTATTTTATGCAAGTTTGGAAGATTCAATGTGTCATAAATGATT GTTTAAGAGATGAAGATGAAGTCATAAAAAAGATGGCTAAAAAGATGAATGAAAAGTTTTTGAAATATTGGGAAGAGTAT AGTGTTGTGCTTGCATTGGGAGCGGTTCTTGATCCAAGGGAGAAACTTGATACATTGAGTTATTGTTATAGTAAAGTTGA AGCTAAGGCTTCTACTTGTGAAGAAAAGATGGATTTGGTGAAGAGAAACTTGTACATGCTATTTGATAAGTATTCTAGCA AAGTGACTTCTTTGGAATCTTCTCAAACCTCAACATCTACTTCTAGAGTGTCTCAAGAATCAAAGAATTTACTTCACGAC CTATCCTACGTGTTTAATGTAAGTTATGTGTATTTTGAACTTGTAATGTAATTATTTAATATTATGTAATTTACTTGTTC TTCACATGTTTTACTTATTACATATGATAGGAACTTGATAGGCAAAAGAAACAACAACGCTCTAAGATTGGAAAGTCTGA ACTTGATACTTATTTGGATGAAGCAACATTGGATTTTGGTGGAGGAGATATGGATGTGCTCAAATGATGGAAGGATAATA AGAGTCGATTTCCAAATCTATCAATAATGGCTCGTGACTTGCTAAGCATTCCAATTACTACGGTGGCTTCCGAATCTTCA TTTAGCATTGGCTCACATGTCCTTAACAAGTATAGAAATCGACTTTTATCAAAAAATGTGGAAGCTTTGATATGTACTCG CAATTGGATGCTTGGTTTTGCTGGTGAAGGTAACTTATCTAATTTGAATGAATATAATTATTTGGCTTAGTTTATTCACT TTATTGTTTTTATATATGTTTTTGAATTTTATTTATTTTTGTAATTTTGATTTCTAGATGGGGATGACGATGGTGATGAT GGTGATCATGATGGAAGAGTGGAACCACCCAAGGCGACGGCATCCAATCCTGTAGATGTGGAAGATAATGAATGATCCAC TCATAGTTTAGATTTTTGAATGTGGTTGTTTGTGAACTTTGTACTTTTTGGCTTGTACTTTATGAATGGGGTGTGTGGAG TGGAATCATGTCATGGAGACATGAATTATGATTTGTGATGTCAACTTTGTATCTTTTGGTTTGTATTTTGTGAACTATGG TGTGTGGAGTCATGTCATGGAGGCAAGGACTATAATTTGTTGTCTTTAATTTATG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0284800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGTTTGGAAGATTCAATGTGTCATAAATGATTGTTTAAGAGATGAAGATGAAGTCATAAAAAAGATGGCTAAAAA GATGAATGAAAAGTTTTTGAAATATTGGGAAGAGTATAGTGTTGTGCTTGCATTGGGAGCGGTTCTTGATCCAAGGGAGA AACTTGATACATTGAGTTATTGTTATAGTAAAGTTGAAGCTAAGGCTTCTACTTGTGAAGAAAAGATGGATTTGGTGAAG AGAAACTTGTACATGCTATTTGATAAGTATTCTAGCAAAGTGACTTCTTTGGAATCTTCTCAAACCTCAACATCTACTTC TAGAGTGTCTCAAGAATCAAAGAATTTACTTCACGACCTATCCTACGTGTTTAATGAACTTGATAGGCAAAAGAAACAAC AACGCTCTAAGATTGGAAAGTCTGAACTTGATACTTATTTGGATGAAGCAACATTGGATTTTGGTGGAGGAGATATGGAT GTGCTCAAATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0284800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQVWKIQCVINDCLRDEDEVIKKMAKKMNEKFLKYWEEYSVVLALGAVLDPREKLDTLSYCYSKVEAKASTCEEKMDLVK RNLYMLFDKYSSKVTSLESSQTSTSTSRVSQESKNLLHDLSYVFNELDRQKKQQRSKIGKSELDTYLDEATLDFGGGDMD VLK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23272 View details on PTHR23272 Search for proteins/transripts with this domain View external data on PTHR23272	1	153	153	2.7E-29	–
PANTHER	PTHR23272:SF124 View details on PTHR23272:SF124 Search for proteins/transripts with this domain View external data on PTHR23272:SF124	1	153	153	2.7E-29	–
Pfam	PF14372 View details on PF14372 Search for proteins/transripts with this domain View external data on PF14372	2	90	89	2.2E-19	IPR025525 Show description in modal box View details on IPR025525 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53098 View details on SSF53098 Search for proteins/transripts with this domain View external data on SSF53098	3	162	160	3.49E-8	IPR012337 Show description in modal box View details on IPR012337 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0284800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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