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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0286100 |
| Transcript ID | LotjaGi1g1v0286100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G06150.1 Cyclin family protein; Swiss-Prot: sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6; TrEMBL-Plants: tr|I3S1U1|I3S1U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0286100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69448591..69450959) extracted from Lotus japonicus Gifu genome v1.2.
AATGAATTAAAATTTAAAAGAGAGGTGCAAGCAACCCTCATTCGACCGTTGAGTTAGGGTGAGAAGCTTCGCGCATTGAT CCCTTGAGCTATAAAAGAGAAAGGGCGCTCTCAACTGCCTCTTCCCCGCGTCATTCTCATTCATTCGTTCATTCATTGCA ATCACTGAGAAAGAAAAAGAGAGAAAGTGCAGTGTTTGTTTTCTATTTTCCATTGAAAGAAAGAGTGATCAGTTCCGAAT TCATGGCTTCAAGACCCAACATCGTTCCTCAACAGGGCAAAGGTACTACATTTATGTCTTCTTGTTCCTGATGAATCATC ATCGTACATGTTTTGTTTTGTTTCTCTGCACTCAATCTTGTTCTTGTCTGTTCCATTCTTTCTTTCCAATTTTGTCCAAA CATTGGAACTTTATCCTTAACATTCCATCACCCACGACCAAGAAAAGGGTTTTTCTTTTCTTTTCTTTTCTTTTCTTGTG ATTCGGTAATTTTGAGTTGTAATGGGGTTTTCTAACTATTGGAATGTTATCTAATGGTGTGACAGAGGAAAGGAATCGGG TGATACTCGGTGATATTGGAAACTTGGAAGCTGCAAGAGAAGTTGAGATCAAGACCAATTTCTGTGACCAACCACTCACC AATGCGCAAGCTGCCACTGAAAGTAACAAGGTAAAATATTGCTTATTTTGGGTCTCTTTGTGTCTGCTTATATGTGATGT TTTGAAAAGATGAAATTGATTATATCACAAAATAAGCAATGGATTGTTTGATTTAATTTCGTGTTAGAAGGTTTTGATTG TTATCTGTTTTTATATTTTTGTTAATTTTAGAAACATGCTTGTCCTAATTTGGATGGAATCAAGGTAGATGATTAAGACA AAAGTAGGAATAATAATAGAAGAACCTCTAGAAGAACCTCTATACATATGTCTCAGAAGAATTTTTGTTATCTTTTTCTT CTGTGTATACAAGTTTTGGTGATTGATTTTGTATCTCAGGTTGCATGTGGTCTAACTAAGAAACCGAATGAGCAAATTGT TGACAATATTGATGCTGGTGATGTTGACAATGAGCTTGCTGTTGTGGAATATATTGAAGATATATACAATTTTTATAGGA GGGTTGAGGTAACTATCTATCTATATATCAATCGTGATTTATGATGTTGTATTGATCTAGTGTTGTATCTTATGATGTAA AATTGACATTGATTCTAATAATGCAGAATGAGAGGCGTCCCAATGCCTCCTACATGGAGTCACAACCTGAGATAGATCAG ACAATGAGAGCTATACTTGTTGATTGGGTGATTGAAGTTCATGTTCACTTGACCAGGTTTCATTTTTCAATTGAAACCCT CTACCTCACCATTAACATAATTGATCGGTTCCTATCACTCATTACTGTTCCAATGAGGGAATTGCAATTGGTTGGTGTCA CTGCCATGCTCATGGCATCCAAGTATGAGAACAACTCGAAGGCCCCTGATGTTAACTTCTTCGTCGAGCTCTCAGATGAA ACTTGTTCTCATGAACAGATACTTAGCATGGAGAAAATCATACTGAAAAAGCTGGAATGGAACTTGAGTGTGCCTACACC ATTTGTTTTCCTAGTTCGCTTTATCAAGGCCTCCTCAATTCGAGATCCGGACGAGGCAGTAGAAAACATGGCACATTTTC TTTGTGAGCTGGGAATGATGCATTATGCCACCTTGCAGTATTGTCCATCAATGATTGCTTCCTCAGCAGTGTTTGCAGCT AGATGCACTCTCAACAAGAGCCCTTCTTGGAATCACACACTTGAGATGCACACTGGTTACTCACAACAACAACTTATGGA TTGTGCTACACTCTTGGTGAGCTTCCATTGCAGGGCTAGGAATGGAAAGCATAAGGCTGTGTTGTACAACAAGTACTCTA ATCCTGAGAGAGGGGCTGTTGTAATGCTTCCACCAGCTCAAAATCTAGTTTTGTAGTGTATATGGCAGTTCAGTTCTTAT TTTTTCTTCTTGGAATGCAGAGAGAGGAGCTGTTGTAATGCTTCCACCAGCTGAAAATTATCTCATTATCTACTCTTATT TTTTTTCTCTTTCTTTGTTTTTATTATTTTCTCACACTTTTCTTTTCTCTACCTAACATACCCTAAGTTCTTGAAGTTTT CATTTTTCATTTGATGGGTTTAAAGGTTCTTGCTTCTTGAAATCTGTATTTGCTAGGCTGAATGCTCTTATTTACATTAA GGTTTTAAAATTTGTCATAGTTTAATTGAATTGAGGATAATTAGGTTAGCAGTCTGGAGTTACATTTAGTGTTAAGTTAA GTTAGTATTAATGAATCAGACATGATGTGAAAATAAAAAGAAAATAGCG
CDS sequence (LotjaGi1g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGACCCAACATCGTTCCTCAACAGGGCAAAGAGGAAAGGAATCGGGTGATACTCGGTGATATTGGAAACTT GGAAGCTGCAAGAGAAGTTGAGATCAAGACCAATTTCTGTGACCAACCACTCACCAATGCGCAAGCTGCCACTGAAAGTA ACAAGGTTGCATGTGGTCTAACTAAGAAACCGAATGAGCAAATTGTTGACAATATTGATGCTGGTGATGTTGACAATGAG CTTGCTGTTGTGGAATATATTGAAGATATATACAATTTTTATAGGAGGGTTGAGAATGAGAGGCGTCCCAATGCCTCCTA CATGGAGTCACAACCTGAGATAGATCAGACAATGAGAGCTATACTTGTTGATTGGGTGATTGAAGTTCATGTTCACTTGA CCAGGTTTCATTTTTCAATTGAAACCCTCTACCTCACCATTAACATAATTGATCGGTTCCTATCACTCATTACTGTTCCA ATGAGGGAATTGCAATTGGTTGGTGTCACTGCCATGCTCATGGCATCCAAGTATGAGAACAACTCGAAGGCCCCTGATGT TAACTTCTTCGTCGAGCTCTCAGATGAAACTTGTTCTCATGAACAGATACTTAGCATGGAGAAAATCATACTGAAAAAGC TGGAATGGAACTTGAGTGTGCCTACACCATTTGTTTTCCTAGTTCGCTTTATCAAGGCCTCCTCAATTCGAGATCCGGAC GAGGCAGTAGAAAACATGGCACATTTTCTTTGTGAGCTGGGAATGATGCATTATGCCACCTTGCAGTATTGTCCATCAAT GATTGCTTCCTCAGCAGTGTTTGCAGCTAGATGCACTCTCAACAAGAGCCCTTCTTGGAATCACACACTTGAGATGCACA CTGGTTACTCACAACAACAACTTATGGATTGTGCTACACTCTTGGTGAGCTTCCATTGCAGGGCTAGGAATGGAAAGCAT AAGGCTGTGTTGTACAACAAGTACTCTAATCCTGAGAGAGGGGCTGTTGTAATGCTTCCACCAGCTCAAAATCTAGTTTT GTAG
Protein sequence (LotjaGi1g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRPNIVPQQGKEERNRVILGDIGNLEAAREVEIKTNFCDQPLTNAQAATESNKVACGLTKKPNEQIVDNIDAGDVDNE LAVVEYIEDIYNFYRRVENERRPNASYMESQPEIDQTMRAILVDWVIEVHVHLTRFHFSIETLYLTINIIDRFLSLITVP MRELQLVGVTAMLMASKYENNSKAPDVNFFVELSDETCSHEQILSMEKIILKKLEWNLSVPTPFVFLVRFIKASSIRDPD EAVENMAHFLCELGMMHYATLQYCPSMIASSAVFAARCTLNKSPSWNHTLEMHTGYSQQQLMDCATLLVSFHCRARNGKH KAVLYNKYSNPERGAVVMLPPAQNLVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 13 | 347 | 335 | 5.6E-128 | – | |
| PANTHER | 49 | 345 | 297 | 1.8E-130 | ||
| PANTHER | 49 | 345 | 297 | 1.8E-130 | – | |
| SUPERFAMILY | 78 | 218 | 141 | 2.51E-43 | ||
| Pfam | 89 | 219 | 131 | 4.3E-37 | ||
| Gene3D | 91 | 334 | 244 | 6.9E-84 | – | |
| Gene3D | 103 | 219 | 117 | 6.9E-84 | – | |
| CDD | 118 | 211 | 94 | 8.44033E-18 | ||
| SMART | 124 | 212 | 89 | 3.9E-18 | ||
| CDD | 219 | 309 | 91 | 1.91736E-15 | ||
| SUPERFAMILY | 220 | 343 | 124 | 7.03E-36 | ||
| SMART | 221 | 342 | 122 | 2.3E-35 | ||
| Pfam | 221 | 340 | 120 | 2.1E-34 | ||
| SMART | 225 | 310 | 86 | 1.0E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0286100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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