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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0288100 |
| Transcript ID | LotjaGi1g1v0288100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plastid transcriptionally active protein; TAIR: AT5G24314.1 plastid transcriptionally active7; Swiss-Prot: sp|Q8VZV9|PTA7_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7; TrEMBL-Plants: tr|I3SR94|I3SR94_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0288100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69867540..69869888) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAAGTTTATAACAATCATTTTTGGTTTTCAGATAAGGTGAAAAATTTCAGAGTAGGCGACTGACTACTACACAGGCA TGAGCACCCTCACTCTCTCTTCCGCTTCACCGGTAATCCTCCGATTACTCTCTCTTTGTATCCCTTCAAAATACGCAGAA TCACTTCAACTGTATAACTGTACAATTTCCCTCCTTAAACTTTCTTTCAAGTATTCATTTCTTTCACTGAACTTGTGCTT TGTGACTTCATTTTTCTGCAGAAGATAGAGTTAAGAGGTGGTGGAAATTCATGGAGCCAGAGGCTTTCTGTTAACTCGAT GGTACAAGAATTTTGAAAATAACTTGAACTTGAACTTGTTTATGCATTTGTTTGTCCCTTCCTCCTGAACTGAACTTGTT TATGCATTTGTTTTACTTTTGTAAGATGATGCCCCAAATGCGAAAAGAGGTTCGTGGACGACAAATCTGGAGGCGAAGGA AATTGGTACCCTTTGCACTCATCTTGTTTTTTTTTCTTCTTTTTTACAATCGGGGTGTTTGGGGTTTTCTGTGTTTATGC TTGCCTGTTACCTGTTTGACTAAATTCCCCAATGAAATATAAGTGCTTGCATTGAGCCATTGAGTAAAAGTGTTTGCTTT GTTGTTGTATATACCTGTTACCCAGTTGGGGAAGTTTACTGGCATAATCAGATTACTTATACTCTGTAAACGTTTTTTTT AAGATGTTAATGTTAATTGCTGGACTCGTGTTTTGCAAACTGATGAGGAATGCTAATAGCACACCTGGGTGACGTTCATG TTCTCCTACTAGTGCTAAGTAGTGGCTAAGTTGTAACATGTTTTTAGTGGATGTTGCTAGCTAGCTTGACGGGTTAAGAT TTCAGCTGGAAGGTTTTTGTTGTTTCAAATGTAACCTGATGAACCGGGAAGTCGTATTTCCCTATGAAACACTGACCCAT GGTTTTTCATTTCTTGGAAAAGAAGGTTTTTATAAGAAATATAAACTTAGTGGAGGTTAAAGAGAGATATATTGTGCTAT CAGACTATTTATTGGGTTATAGGTTTTAAAAGTAGACTGGAATTATGAAACAAAATTAGCAATCTGGAGTTTTATCTTCT GCACATGATAGTTTCATGTCATTCCAAGTAAACATGCTATCACATTTTGATGTGATGCTGCAAGGAGAACACTGGAACTT AAAACAATGAAGATGGTAAGGGAAAAGAAAACAAAACAAGGTTGCTTCTCATGGCATGTATGTTAACATTTTGCTCCCAA GTTAGCTCTCATGCACATGAAGATTCTGCATGCTTATCTTTCTCCTTTTCTAATTAATTTAACAATATTAATTGTTGCAG TATGAATACATAATGGTTGTGCTGGTGAATAATAGTATCCATTACTCATGCTATTGGCGCAGCCTCTTCTAATATCATGT GTGATTAGCCTGAATGTTAAGCAAAAGTTTATTTTGTTCACAGACGAAAAAGGATCCATATCTTCCCGAAAAAATTGAGC GTGTTCCTTTCCTTGAGGAGCAGGTGAGGATGATAAAGGAACAAGGAACGATCTTGCAACTGGACATAGAGAGGCTACTG CTATCCGAAGATAACAGGTATGATTTCGTGAATGAGATAGCTGCTGAGGCCAACTCTTATGTTGAGAACAATATGGATGA GTATGGAGATGAGAAGAAGGCCATTCTTCATGTTTTGAGCAACCGAATGAATGATGCTGGAATTTACCGACCAGAGGCAT ATGCTGTGCCTGATCCCTTCAAGCCTGGGCCTCATTATTTGAGAGAAGAATATAGATAAAATGTTATGCTATGACAAAAT CAAAAGAAGATGAAATTATTATGCTGTGATTGTAAACTAGAGATAAGAATATATATTTTTTCTTCACATTTCATAATTGA TGTCCGTCTTAATTTGCTGCTGTTGTTTTTATGCATGCAAAGCTATGTTCAAACTGGAAAATAAAATAAATGTAACTGGC ACTTAGTTTTCCAATCAATATTTGCTGGGTGGGACTATGGGAGTCAATGACTCTGAAATCGGGTTTGCATTTCCAAGGGA CAAGAAATTGGTTTTAATTTTTAACTTCCAACAAACTGGTCATAAGAGAAGATGATGAGGGGGAAGAAAAGTTAAACGAA GGGTATATTTGAGTTTTTAAAAACAGATAGGGGTGTGATTTGGGTGATGGAGATGTACTTAACAACACCGAATGAGATTA TTTTAGAAAGTAAAGGATTAAAATATTTCACTAGAATTAAATATTGATAATTTTAGAATAGCTATAAACATTATTTTTTT GTGAAAGAACCTATATAAACATAATTTAC
CDS sequence (LotjaGi1g1v0288100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACCCTCACTCTCTCTTCCGCTTCACCGAAGATAGAGTTAAGAGGTGGTGGAAATTCATGGAGCCAGAGGCTTTC TGTTAACTCGATGATGATGCCCCAAATGCGAAAAGAGGTTCGTGGACGACAAATCTGGAGGCGAAGGAAATTGACGAAAA AGGATCCATATCTTCCCGAAAAAATTGAGCGTGTTCCTTTCCTTGAGGAGCAGGTGAGGATGATAAAGGAACAAGGAACG ATCTTGCAACTGGACATAGAGAGGCTACTGCTATCCGAAGATAACAGGTATGATTTCGTGAATGAGATAGCTGCTGAGGC CAACTCTTATGTTGAGAACAATATGGATGAGTATGGAGATGAGAAGAAGGCCATTCTTCATGTTTTGAGCAACCGAATGA ATGATGCTGGAATTTACCGACCAGAGGCATATGCTGTGCCTGATCCCTTCAAGCCTGGGCCTCATTATTTGAGAGAAGAA TATAGATAA
Protein sequence (LotjaGi1g1v0288100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLTLSSASPKIELRGGGNSWSQRLSVNSMMMPQMRKEVRGRQIWRRRKLTKKDPYLPEKIERVPFLEEQVRMIKEQGT ILQLDIERLLLSEDNRYDFVNEIAAEANSYVENNMDEYGDEKKAILHVLSNRMNDAGIYRPEAYAVPDPFKPGPHYLREE YR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 3 | 161 | 159 | 5.7E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Plastid-encoded plastid RNA polymerase complex | An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. | ||
| Biological process | Plastid transcription | The synthesis of RNA from a plastid DNA template, usually by a specific plastid RNA polymerase. |
Expression pattern of LotjaGi1g1v0288100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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