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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0291200 |
| Transcript ID | LotjaGi1g1v0291200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P70669|PHEX_MOUSE Metalloendopeptidase homolog PEX; TrEMBL-Plants: tr|A0A151SN40|A0A151SN40_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0291200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70702279..70703817) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATCGTAGGTATATATATCACCCCTCAAATTAAAACCGTCTTACGTCTTAAGTAGAAGTTTTCCAATATGGCAAGG GGTTGAGCTCCTTATGTATTAAGTAAAAATCGTTGGACTGTCCATCTCCTTGTCCTTATGTATGACCAGATCCTGATTGA GCTCTACGCATCAAGAATATTTGTCAACCACATGGATTAGCAATTCATACAACTACTAAAATCACTACACTTTATCCGTC TCTAAAAGGTTCTTGGGAGGAGCATTTACATCTTCAAAACTTTATATAAGAGATTAAAATCAAGCTTATAGCTGGATTAA CTTTTCAAACCTCCTAAAACATACATATCTTTATTTTACTTTTATATTTTTTGGGTAAAAGTCTAAGACATAGTGTATCT TTTGCAGAGATTCAGTGGAGTCAATGAACCACCTTTTATTTACTTGTCCGTTTTCTTACTATGTGTGGTGTAGAATATAT AGATGGCTGGGTTTTGAAACTGTTTTACCAGATGATTGCAGGGTACACTTTCTACAACACTCACTGAATAGATGGAAAAA GAAACAGAAACGGTGCTGGAATGCAATCTGGGCAGCGGTGGTATGGTCTATTTGGTTAACTCGTAATAATGTAGTATTCA AAAATGATAATGCGGATTTAGAACAGGTATTTGAGTTGATTCAATGGCGTGCTTGGAGCTGGATTTCTGCTTTTGAAAGG GAATTTCGTTGTTCCATGTTTGAATGGAAATCTGACCCTGGGTCCTGTATTTCTCAAGTTTGATGCGGGTTTGTGGCTGT GAGTTTTTTATTTGATAGGGGGCTGGAGGTTGCAGGGTTCTTTTAATTGTTTCTGTTGATTTATGGTATTGGAAAATTTC TTTGTTTGAGGTAATTAAGTAATTAACTTCTGCTTTGGCTCTGGTTGGATTGATAGTCAAGATGGAGGGTGAGGTTGGCA AGGATCATAGGGACTTGGAGCTTATGTGCTGCTGATTTTGGTTGAGCAGAGTTGGATCTTTGGCTTAGAAAAGTTCATTC AGAGTGCTTGTCGTTTGAGGGTTGGACAACCAGTGTATTTGCTGCATAATTTTGCCAAATAAAGGAGGAATTGATTTAGT GCTCAATGCTATCTTTGATATAGTGACCTGTTCTACTTTGTGTATAGCATGTGGGAGCCTAATTGTTTCATTGATTTCGT TGCATTCTTCCAATAAGGATTTTGCTTGATGAAGACTTAGCTCCTGGAAGGTCTGGCATTTGGTTTTAGGGGTGGGTTTT AGTGTGGGATTATTTATCTCTTTGTAAACCTCCTTGGAATTTTTTCTTTGGCTTTATAAATTGGGTACTCTTTTTCCTTA TTAGGTTTTTCTATGTGGGTTTTATCCTAGTAAGGTTTTAATGAGGCCCCTTTTGTAAAGCCTTTTTTTAAGGAGGTAGT GGGTGGGTAGCCTTAACACTAGTAGGGTCTTTGTCTTTGTACATGTTCTCCTCTTGTTCTTTTGCTTCATTTTCCTTTTT GTATTGGGTTGAAGTACCC
CDS sequence (LotjaGi1g1v0291200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCACCTTTTATTTACTTGTCCGTTTTCTTACTATGTGTGGTGTAGAATATATAGATGGCTGGGTTTTGAAACTGT TTTACCAGATGATTGCAGGGTACACTTTCTACAACACTCACTGAATAGATGGAAAAAGAAACAGAAACGGTGCTGGAATG CAATCTGGGCAGCGGTGGTATGGTCTATTTGGTTAACTCGTAATAATGTAGTATTCAAAAATGATAATGCGGATTTAGAA CAGGTATTTGAGTTGATTCAATGGCGTGCTTGGAGCTGGATTTCTGCTTTTGAAAGGGAATTTCGTTGTTCCATGTTTGA ATGGAAATCTGACCCTGGGTCCTGTATTTCTCAAGTTTGA
Protein sequence (LotjaGi1g1v0291200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHLLFTCPFSYYVWCRIYRWLGFETVLPDDCRVHFLQHSLNRWKKKQKRCWNAIWAAVVWSIWLTRNNVVFKNDNADLE QVFELIQWRAWSWISAFEREFRCSMFEWKSDPGSCISQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 86 | 85 | 9.8E-14 | – | |
| PANTHER | 2 | 86 | 85 | 9.8E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0291200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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