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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0296300 |
| Transcript ID | LotjaGi1g1v0296300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome hibernation promotion factor; TAIR: AT5G24490.1 30S ribosomal protein; Swiss-Prot: sp|P19954|PRSP1_SPIOL Ribosome-binding factor PSRP1, chloroplastic; TrEMBL-Plants: tr|I1KB15|I1KB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0296300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71764407..71768699) extracted from Lotus japonicus Gifu genome v1.2.
ATTCACTCATTTGTAATGGATAAGACGGGCTAAGAGAATGGCCCGCGTGTGAATATTCATCCTCATCCAGCAACAAGAAA AAGACACTCTACATTCATTGCAATCACTCTCACTATCACTCTCTGTCTCCCATTTTCATCTTCATCCCCTTTCCCCATTT CTCCATATTCTACTACAATCCTCACTCACTCTCTTCAACTTCCTTCGCAATTTCAATGGCCGCCGCCACTACTCCCTTGA ACTTCCACTTCCCCTCACCATCACCCTCATCTCACACTTCCTCTACACACTCTGCACTTTCTCTCCCTCCCTTCTCCCTA ACCTCAACATTCTGGGGGTTCAAACTCAAGCATGCTGCAACTTCTACTGTTTCTGCTGCTGACAATTCCACAAACACCTT CCGTGCAGTTCGCAATTCATGGGACGGTCCACTCTCCTCCGTCAAACTCATCATCCAGGGCAAGAATCTCGACCTCACCG ACGCTGTCAAGCAGCACGTGGAGGACAAGGTGGGGAAAGCCGTTCAGAAGCACAGCCACATAGTCAGAGAGATTGATGTC AGGCTTTCTACTCGAGGTGGAGGAGAGTTTGGGCGAGGACCCAGAACTAGTAGATGTGAGGTAAGTGTAGTGAAACATTC ATTTGCCTCTTACCCAACAGCTTAAGCTTTTGGGGTAAGTGGTTATTTTACATGGTATCAGAGTCTCTATGGCCGAAAGG TCTAGAGTTTGATCCTTGCTCCTCTCACTTTCCACTTAAAAAGTGGAATTTAATGACGCACATGGTAAGTGAGCCATGTT TACCATGTGCATTTATTCGCGCTTCAAGCTCAAAGGGGCCCAAAGGGCTCTTGCGTGAGCGGGTGTGGTTATTTAACAAA ACCTTATTCCCATTTGAAAGTTTCTAGAAATTCAATTCGTTGATTGTTTGATTGATTCTTCTGATTTTGCATTAGGTGAC TTTGTTTACCAAGAGGCATGGCGTCGTGCGGGCTGAGGAGGATTCTGAAACTACCTATGCAAGTATAGATTTGGTGTCGT CCATCATTCAGAGAAAGCTGAGGAAGATCAAGGAAAAAGTGTCTGATCACGGTCGCCACATGAAAGGGTTCAATAGGGCG AAGGTTAGGGAGCCGGTAGAAGTGGAAGTGCCCTTGGAGGAGGATGATGATATATCCCCACTGGAAGAGGAGGGAGAAGC AACTTTGGTCGAGGTTAGTAGCATTACATTACTACTTATCATCAAATATTGTTTTATTTCACAGTCTATAGATTCATTTG TAAGAGCTTATTTGAGTTTATCTTGCAGCATGATTAGTGTTTATGCTTGTATGAGCTTATGAAATAGTTTGAGTTATCTA CGAGTTGTTCTGAGTTTATTTCATAAGCTGCGAATATTCGCATATGAATAAACTCATGTTCCTATAAGCTATTTCGAGCA TATTTAAATAAGTTTCTCGAAGCTTATGCGATGTCCGTTTATTGTCATAATTATGCCGTCATTCTGCCTTTAATTTAGCT TCCCATTCATGTTTGTCATGCTGTTTATATTGGGTTTTGTTTATTTATTTCTCAAATTAGTTCAAATTGTATTGCATCTT GATTAGCTCCATGCTTGTGTATTGGTCTATACCTTGTGTTCATTAATTCCAGAAAACAAGTTACAGACTTTATCCAATAG TTCCTCCTTCCTTCTAATAAATACCTTGTTATATTCTAGACATACAAGTGAAAATTGTTCTACAAACAGAATTGCAAAAT TGAAATTTCTGGTTTTGAAGTGACAATTTAGAGGAGCACTGTATTCATTGAATACATGTTTGGAAGTTTATCTAAAATTA GAATCAAATATGAGGAGAAGCTTCTTTGCATGTTTGTATATTCATTGGGTGGGTCATAATTGATTCTGGTTACTAGACAC ATATAGTGCATGTTTAAACACATGGTAGATTTCCACGATAGAAAGAGAATTGATTATCCGAGAAACTACTCTCAATAGCT TTTGTGTGAGCAGAATTGATTAGGAAAATTTTCAGTAGGAATTCAAACATGCATTTGTAGCATGTTTAGTTTTGTTTCTG CATAGCGAGAATCAGCTATAGTTAGACAAAAGCTAAGGGAAATACCTTCTTTCCACCATAATTTTGCCTTTCATCATGGT TTCTCAATGAGTTTCCAAATTTTTTATTTAAAAATTGATTCTCCAAAAATGTGGTATTTGATCAGTTTCCAAACATGCAA TCTCTGAATATCTTTTTTAAGTGCCAGAATTAATTCCGAGTAAATTAAAATAGATCGAAACATGCGATTAATTATAGCAA TTAGCAAAGTAATTTAGTGCATATGAACCAAATGACCCTACACCTCTCCACTTTCACAAAATGTTATCTCCTTTTGCAAG CAATTAGGGAGCAAAGTTTCTGTGGGACAAGCTGCCTCTTCCCCTGAAAACAAAATTGGCTCATGTTAACATGACAAAGT TCACACATGTACTGTAGAAAGCTTAGAATCTAACTTAGCCATGTTCATGAACATGTCCTTATGGTTGTTTTCACAGTACT CTCTTTCTTTGGGCCGTAATATGCTTTGGTGGCTTTCAAACATTTGTGTGGTGAGAGGATTGAGACTGCCAGATAACATT TACAACCAAATTTGGCCCCAATCCAACTTTTTTTCTTTTTGGTGCACAAAAGTTTACTGAAACTGGAAAAAAATCTATTT CAGGCAAGACTTTGTTTGAGCATTTTAAATGAAAATTGAACAGAGACTAGCCAAACACTCCATTAATATGTAGATTGAGT TGAACACAACCTAACATTCAAGTTTTCATTGAATGGTCTTACTTGATTTAGCACTAAGTTGGTAGTGTTCTAATTCTTCA AGGAACTATTGAAATATTGCTTGCATATTGGAGGGCTCTTGTGCTGTCTTTGGATGATAGATGCAACATTGCTTGTCGTG AGATGGTGCTATTTTCTCCCCCTTGCATTGCACCTGCTTAAATTTTGAGGGTTTTTTTCAGGTTGTTCGGACAAAGTACT TTGACATGCCACCATTAACTGTGTCTGAAGCAATTGAGCAGCTTGTAAATGTTGATCATGCCTTTTATGCTTTCCGAAAT GAAGAAACTGGTGAGCAAGTAGTTTTTACCTTATCTTTTGTTTGGCTTTGTTTCTTTCTCTCACCATTTTCTTGTATTTC ACTCTAGTATCATTAATTTAACTTTGGCAATCTTGGGAACTAAATGTAATTCTACCTCTGCTTCAGGGGAGATTAATATT GTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAAATGGACAAGCAGAGAAATTGGAGCCTTTAAT GGTTGAACCCGCTAGAGAAGCCTCTCTAAAAGAATGAAGGGACTCGTCGAAAACTCTTTTTTTTTGTAAGAACATAAGAG CTTGTACATGTTTAGCGGTTACTAATGGTAGTTTCTTTGGAATCTGAAATGCATTGGCAATTACAGTGGAGGCTCTGGCA TTTCAAATGCTAACCAAGTTCTGAAGTATGATGATTGTAAAGTGAAAAAGATACACTCATACACCACTTTTTGTGCTGCG CATAATGTCAAGAATGCACCTCTATCTAACAATGCCATCTGCTTTGTTTCATCATTGGTTTTGTTCTACTTCATCTATTG CTTTGATCATTGGTTATCAACTAAGATTCATGATACTTCATTCGTTGTGCTTCTTATGTATGTGGATAATGTAATTCTTG TTGGAAACACATTGTCCAAGTTTGGATTTATCAAGTCCACACACAAGTCATACGGTATCAAGGATTCTGGCCCCTATTTT CTTAGGTTGGAGAGTGAAATTTCTCTATGTCAAAGTAAAAACTGCTTTAATATACTAAAAGATCTTGGGTCTTGGCCTCA CTATCTTTTAAATTGCTCTTCGCACCCCTTGATCTCTTCTTCAGACTTCATCAGAGTTCAGGGGAATCTTATTCAAATAT TTCTTCCTGCAGTAAATTGATAGGCAAATTGCTATATCTCACAACAACTCAACCAGACATTTCCTTTGTTATGAGGCAGC TGAGTGGGTGAATTCATGGCTAGTCTCACGCTTGTCCGTCCTGGACATATCGTTAGATAGGGGTGTTCATAACCGAACCA ATCCAACAAAAACTGAAAAAACCGATCTAAAAAAACTGAAAACCGAACGGATCCAAAATCGAAAAAACTGGTATTTTTTA TTGGATTGGATTGGATTTCAGATTCGATTATCAAAACTGAACCAAACCAATCC
CDS sequence (LotjaGi1g1v0296300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCGCCACTACTCCCTTGAACTTCCACTTCCCCTCACCATCACCCTCATCTCACACTTCCTCTACACACTCTGC ACTTTCTCTCCCTCCCTTCTCCCTAACCTCAACATTCTGGGGGTTCAAACTCAAGCATGCTGCAACTTCTACTGTTTCTG CTGCTGACAATTCCACAAACACCTTCCGTGCAGTTCGCAATTCATGGGACGGTCCACTCTCCTCCGTCAAACTCATCATC CAGGGCAAGAATCTCGACCTCACCGACGCTGTCAAGCAGCACGTGGAGGACAAGGTGGGGAAAGCCGTTCAGAAGCACAG CCACATAGTCAGAGAGATTGATGTCAGGCTTTCTACTCGAGGTGGAGGAGAGTTTGGGCGAGGACCCAGAACTAGTAGAT GTGAGGTGACTTTGTTTACCAAGAGGCATGGCGTCGTGCGGGCTGAGGAGGATTCTGAAACTACCTATGCAAGTATAGAT TTGGTGTCGTCCATCATTCAGAGAAAGCTGAGGAAGATCAAGGAAAAAGTGTCTGATCACGGTCGCCACATGAAAGGGTT CAATAGGGCGAAGGTTAGGGAGCCGGTAGAAGTGGAAGTGCCCTTGGAGGAGGATGATGATATATCCCCACTGGAAGAGG AGGGAGAAGCAACTTTGGTCGAGGTTGTTCGGACAAAGTACTTTGACATGCCACCATTAACTGTGTCTGAAGCAATTGAG CAGCTTGTAAATGTTGATCATGCCTTTTATGCTTTCCGAAATGAAGAAACTGGGGAGATTAATATTGTATACAAAAGAAA AGAAGGAGGTTATGGACTCATTATACCCAAAGGAAATGGACAAGCAGAGAAATTGGAGCCTTTAATGGTTGAACCCGCTA GAGAAGCCTCTCTAAAAGAATGA
Protein sequence (LotjaGi1g1v0296300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAATTPLNFHFPSPSPSSHTSSTHSALSLPPFSLTSTFWGFKLKHAATSTVSAADNSTNTFRAVRNSWDGPLSSVKLII QGKNLDLTDAVKQHVEDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEEDSETTYASID LVSSIIQRKLRKIKEKVSDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIE QLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREASLKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 64 | 280 | 217 | 6.1E-105 | – | |
| PANTHER | 64 | 280 | 217 | 6.1E-105 | – | |
| Hamap | 76 | 277 | 202 | 19.973 | ||
| SUPERFAMILY | 77 | 183 | 107 | 4.71E-23 | ||
| Gene3D | 77 | 184 | 108 | 3.3E-22 | ||
| TIGRFAM | 77 | 181 | 105 | 1.2E-18 | ||
| CDD | 77 | 176 | 100 | 1.36832E-23 | ||
| Pfam | 79 | 177 | 99 | 4.2E-22 | ||
| Pfam | 221 | 273 | 53 | 8.1E-24 | ||
| Gene3D | 231 | 283 | 53 | 1.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Primary metabolic process | The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. |
Expression pattern of LotjaGi1g1v0296300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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