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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0299300 |
| Transcript ID | LotjaGi1g1v0299300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-H2 zinc finger protein RHA2a, putative; TAIR: AT5G24460.1 RING-H2 zinc finger protein; Swiss-Prot: sp|Q02487|DSC2_HUMAN Desmocollin-2; TrEMBL-Plants: tr|A0A1J7G9A2|A0A1J7G9A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0299300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72405399..72413331) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGTACTATAGTGTCCATGCGTCACCCATACCCACTATTTTTTACAAGCATTTACCCATAACCAACCCAATTTTTTA CGGGTACCACTGGGCCATACTTTCATGGACCTCCCCATCACCATAACCTCAATCAAACCCTTCATAAAAATCACAACTTG AACCCCAAAAACAACCACCGCGGTTGAGATGTCCCCGCCGCTCCCACCGCCACTAACCAACCGTCTCTTAGGGCAGCCCA TCACCAACCTTCCCTCCTTACCGGATCTCTACCTCACCACCCTCTCCGTCTGCTTCCTCTTCACCTCCTCCAGGTCCCAC CACTCCACCTCCTGCCCCTTCCCCTCTCTCCCTCTCAACCGTCGCCGTTTCCTCAAAATCCCCGCCATGTCCCACTCCAC CACGTCATCTTCGCCACCAAACCCTTCAAACAACAACCTCCTCAGCAGCCTCAACCCCCGCCACAGCTTCGCGTCCCCGC AGTCCCTCTCCGACTGGCTCAAACCGCGGTTACCCACTGATTCCTTCGCGACATGGGGCGTCAAGCCCGGCACCAAGAAC GTCCACAACCTCTGGCTCGAGATCGCCGAGGGCGAAACCTCACTCGAAGACTCCACCCCGCCGATCCGAACCGTTCAGGT CGTCACGGTTCGGGTCACCGGAAAGGATGGGAAGTTCCTGGTGGAGTCTCACCAAGAATTGTCAGACGGGAACGTGAGGA AACGTGGCAGACCCTTGTCGGAGAAGATGAAGCCCAACGAGGACCCTGAATCCGCCGCCGTGAGGGCCATCAGGGAAGAG CTTGGCTCCCTGATAGGGGGTGGCGCTGAAGGCGACATTGTGACGATTGATCCGAATTCGTATGAGATGAGGGAGGAGGT GCGGTGTTCGGGTTCGTACCCGGGCTTGCCAGGTTGCTATGTTCTGCACACGTTGAACGCCACCGTGGAGGGTTTGCCGG AGGGTGATTTTTGCACCTATGAGCATGATGAGTACTCTTGTTTGGATGACAAGAAAGTGGCAAACCAGGCTGTGGGTGTC AGGAAACATCATTGGACATGGGTTAGTGCTGATTCTTTGGAACATTGATGTCAGTTTTTCTTTAGTTTTTACTTTGAAAT TTAGATAATTTTTTTGGGGTGGTGATGGAGATGCTATGTTTGCCTATGAATATTGGGACTCTGGAGCATGCTTGCCATTT ATGTAGGCATTTTCTCATTATTCATGGTCTTTTATCATTAGTATTAATCTTGACTCTAAAGTATGAAGAGTGTGAAGTTT TTGTATCAGTATAAATTGATCAATTTTTGGAGCTTATAAATTGAAATTGAAGATCAACTTTGGCAGTTGCTTGTGATCTT TTAAGCATGGCCCGAAAGCTCATTGTCTCATTAAGAATCCGTTTGGTATGCCCTGTCTGTAGCATTGATTTTCCAGTTTA GTATTTCACTGTATATATGCTTAAGCCACTTTTTCTGATGTTCAGGATGTTACCTGTAAATATTGAGGTTTACATAAGTT CACATAATCTTAGAACCTTCAATCACAAAGGGTAAACTCAACTCTTGGTGGTTTAATTAGCTTTATATATGTAGTTTAAC AGCCCATTCAAATTGGCTTGCTGTAATTTGAGCTGTGTATAGGAGTTTGTTTTGCTTAAAGCTATTTTGACAATGGTGAT AATGCTATAGATGAGGACTAGTTTCTGTTGATGATGTACTTATGGCATTTTGGAGTAACACTACTGCTCCGTGGATCAAT CTGTGCATTGATCAATCTACTTGTTAGATACATATTGTGTCTGGTTTGGCTAGTGTCTCTGCCACTCATAAGTGACAGCA TCGCTTAGTTGTTCAGCTCATGACTCCAATTCATTTATTTTCTGTGATCAATTTTAGGATTGAGTATCTGGATTTCTACT CACATATAAGTAGGCTTAGTGCATTTATCATTTTATTGAGAAGCAAAACTAATAATCATATTTATAAACGGGCTACTTAC TTGAACTTATTTGTTCCTTTCCAACTACAGAAACCTTGTGTCGGTCAGGACACAGGAAGTAGTTAAATGCTTTAATTGAA ACGACCTCCCCTTGTAGTTAAATTGTGTAGATAGAGTGCAGGGTAGTAAAATACATTTTAGAAGAATCTTATAATGACTC ATGTGTATAACTTGCTTTGGCATTAGGGGATGTAGCATATCCATCGAAAGCTATAGTAGATTGAGATTCCTTCATCAATA TTGAATTTCAAATAGAAATTAGAAATATTGGAGAGGAGATTAGTCACTTGGCGTGTTGTTGTTGGTGGTCTAAAACAACG ACAAAGCATCCTAAATATAAATAATTTAATTTATGAATGAGATGTAGGTCAGTTATGGAGATCACACTCTTTAATTTATA AAGAAAACGGTATATAATCTGAGTGTACTAATTCAATTTGATTTGTCAAAATTAAAACTGAGATCTAAATATAGGTGTGG AAACGGGAAAGGTTTAATATTGATAATTTAAAAACTTATGGTTAATTAAATTTAAGTAATACTAGTTACTTAGAAGCCTT ATATTTTTTTTTGGTACATAAAATGGTAGAACAGAGAGAAAGCACCTCCAGACAACCGGGCAGGGCGCTTAGAAGCCTTA TATTGACTAGATATATGACTAACTAAGTTCTTATGTAGGATAGAGTAACTCATCTCTAAGCTAACTTTTGGGTGAAGTTA TGTGTAAGTCAAATTATAAGATGATATCAGAGCTTATCATAGATTCGTTTATTAAAGATTATTCATATATGAGCCACATG CATATGTTAATTCCTAAAAAAAATTCACACTTCAAATGTCCAGTCTTTGATGTGAGAGTGTGTGTTGCGAAGTCTCATAT TGGCTAGAGATATGATTTAATAAATCATTATCTAGGATAGAACAATCCTCATCTCTAAGCTAGCATTTGATGTAGAGTTA CAAATTTCAAGTTGTTAGAAATATCATATGAGGTCATTTGTGTTATTTATCCAACAACTTAAGTTTTTGGGATGATAGTT GATTCATGACATGTATCAGAGTCTCTACAATAACAATAAAAGGTCTAGAATTTTTTTTTGTTACACGAGAAAGGCTAAAC AAAATCAGGAACTAAGTTACATTCTCCAAACATAAAGAGGCAATGATAGAGGACGGTGTTTGTCGCTACACTCAATGAGG AGAGCCTTCTGTAGAAGCTTGGCGGGCCAAAAAATCCGCTACATTTTTCTTTTCATGAGGTAGATAGACCCCAATTTGAT TATTGTTAAACAAATTGAAATTCAATACATGGTATATGAACTTGTACATTCTTTATGTTTCAAGCCCAAGAAAGTCTTGT ATGAGGTATGTGTTGTAAAAGGTACATGTCTAATTCATGCATCATATACCTAATGATTTAATTTTTTTTAGACAATTAGT TCATGCTAATTGTGCCAATAGATGAAAATTAAGTAATTAAGATAAGAAAACTGAGGTCATTAGTATAAAGAGATCACATG GCACATTTTTTAAGTTGATAAGAAGATAATGAGAATATCACTTAGATCTTGATGTAAACTAGTCAAAGACCAACTAATCA AACAGGCCCTTGATTCTGATCTCATATGCGAATCAAGAAGTGGAAGAAACAAAGACCACAGTGAATGAAGCATAGAGTAG CCACGTTACCAAGAAGAAAGAGAAGAACCCAAACCTCAAATAACAAAATACAATCCAGAACCAGAATATTTCATCCTCAT CCCAGACAATTACAACAAGCCCAACACCAACCTCTTATTTCATTTTAATTTCAAAAAAAAAACCTCCTATTTCATTTTAT TTTCCCATAAAACTAAAAAAACCTTTCAATTCTTCTTCATCCATCCAAACCCTTCTCTCCTTCATCCCCACCCATCATGA TCATGGACCTCTCCATTCATCATAATAATCACAACTTGAATCCTAAAAACAACCACCGTGGTTGAGATGTCCCCGCCGCC GCCACCGCCACTAATAACCAACCACCTCCTAGGACAGCCCATCACCAACCTCCCCTCCTTACCTGATCTCTTCCTCACCG CCCTCTCCGTCTGCTTCCTCTTCACCTCCTCCAGGTCCCACCCCACCACCTCCTGCCCCATCCTCTCACTCCCTCTCAAC CCTCGCCGGTTCCTCAAAATCCCCGCCATGTCTCACTCCGCCACGTCATCATCGCCACCAAACCCCACCACCGCAAAAAC CAACCTCCTCAGCCTCAACCGCCGCCACAGCTTCGCGTCCCCGCAGTGCCTCTCCGACTGGCTCAAACCGCGGTTACCCT CTGATTCCTTCGCCACATGGGGCGTCAAGCCCGGCACCAAGAACGTGCACAACCTCTGGCTCGAGATCGCCGAGGGCGAA ACCTCCCTCGAAGACTCCACCCCGCCGATCCGAACCGTGCAGGTCGTCACGGTTCGTGTCACCGGGAAGGACGGGAAGTT CCTGGTGGAGTCTCACCAGGAGTTGTCGGACGGGAACGTGAGGAAGCGGGGGAGACCCTTGTCGGAGAAGATGAAGCCCA ACGAGGACCCTGAATCCGCCGCCGTGAGGGCCATCAGGGAAGAGCTTGGGTCCCTGATCGGCGGCTGCGGGGGCGTGGTA GGCGATGGAATTGAGGTGGGTGATATAGTGACGATTGACCCGAATTCGTATGAGATGAGGGTGGAGGAACGGTGTTCCGG CTCGTACCCGGGTTTGCCCGGTTGCTACGTTCTGCACACGTTGAATGCCACGGTGGAGGGTTTGCCGGAGGGTGATTTTT GCACCTATGAGCTTGATGAGTACTCTGGTTTTGATGACAAGAAAGTTGCAAACCAGGCTGTGTATGTCAGGAAACATTAT TGGACATGGGTTAGTGCTGATTCCATAGAACCTTAGATGTCAATTGTTCTCTTTTCTTGTAGGTTTAACCTGAAATTTTG ATATGTTTTTGGGTGGGGGTGGAGATGCTATGTTTGCTTATAAATATTGATGCCAATCCATTGTATATCATGTTTTGGGA TGATGGAGTTTTACATATAGAGTCAAGTTGTTGTTACTAGCTTATGTATAGATAACACACTCAAAGTTTGGCTTTGTTTG TAGCTAATTCACACTCAATCAAGCGCAAAGAACTTGTTTGAGTTCTTCTTTAAATTTGTATTCACACAATGATATAAGGT GATGTACATATACTTACCAAAGTTGGTTACAAAGTCTCATGATCCGGCAGAGATAGTTAATAATTCTTGGTTGTTCAAAG TAATCGATTTGTATAATTAATGACTGAATAACATGGACTACTTTATTTCATAATTCCAGTGCGTGTACAACAGACGATCA TCTTTTATCATGACCATGTTTAAGGGAGAATGTTAGATATTAAACTTGGCCACGGGAGATGCCGGAGTAGTCCAAATTTG TTGTTGTACTCGCACTGAAATTATCAAACAAAGTAGTATATGCTATTAGGCTGTTAGTTGTAAAAATATGTTGCTTTAAA TAGTCAAGAATTTGTAGGTTTCCATGTCGGTTTATAAGGCTCTTGTAATTGATCTTTGTTAGTATATATAGCACCCTGCC TCATTGTTTATAATATATGTGTGTGCAAGAAAATTAAGCAGAAAGTGAGATGAACTCCAACTAGTTTTTGAAGTTTGATT TAAGTGTGAATTGTCTTCAAACAATAGCTGAAATTCTTTAGTCTTGTCACTCCAATTGAAATATTGTCTGTCAAATCTAT CTCGTAAGTGCTTATTTGTATAGCTATTTTATTTCAACAAGAAATTTTTGTGTTGGCAATTGCAACTGGTATATAATATT CTGCTTTCTCTGTAATTATGCTGCATTAGCCGCTTGCGTTGGTTGTAACTTGTGAACCTGACATTTCAATGATTTCATGA CTCTTACTTCACTGTTTTGTGCTCTAGCATTTGCTTGTCAGTTGTGACTATTTGAGGTATACTGGATAGGTTCTTGTCCA AATTTAAGAATCTCTGAATTTCGTAGCATGTGTTAGGCGAGCTTTGACATGGTGGTTTGGGTGTGTAATGAAATGAAGCT CTAAATTGGTGTTACATTCTTGAATGGGGAATTCCCTATCTGTTAGGAAGTATATTAGAAAATTATATGTCAGAACTCAG ATGGAATGAGGGAGTGTTTCTGTTCCTCCATTGAGGGGATCTTCTTTATACGTATGTATACCTGTTAGTGTTAACAAAAT GGAAAACTGTAGTTGGAATAACTAACTCTAACCACCATTGGATGCAAGCATAAATTATGTAGAGCTGCTATAATTGCTAT GTTATGTATAACTGTCTCTATTCATCGACGCATCAACACTAATTATATCTCATGATAAGTATTTTAAAACGGTGTAATCT GTGAGCATAACAGTTAGTTAATGAGTTCGTTAGAGAATAGTTAACTAATTGTGAGCATAACGGTTAGTTAATGAGTTCGT TTAGAGAAGAGCGAGGAGAGACTATAAATAAGAGGGTGAAGGGAATAGGTATGGCTCTTTCAAGTCCAAACACGTACTAT AATTTTATTTTACTTTTAAGCTGATTTATGAAAGAGCCACTCACGGACACAGACTTGTATCAATGAAAATGTAGGTAAGG TATTCAAAGCTTCACTATCTTTCCTTCTTCGATTGGTCCTATAACCAGATCTTCATCTTCATAAAAAAAAAACTACAAAC CTAAAACAACTTTTATTCGAAATATTATTTTAGATAATGAAAAGATCCCGAAGCTTTAACAAAGATAGAGAGGGAGAGAT GCCTCTTCATCTTTATCTGCAATCTCCATCCAATATCAAGTCTTCCCCTTCTCCTCTGCTACAGAATATGCCTCTTCTTT CCATCTTTCTCTTCCCATTTCCACCACCGCCTCTGTTCCTCATCATCTATGAACACATAAACTTTAGATGAACCTAACAT TTCCTTTGCCTTCATCATCCCTGAACCCTAAACCCAAATCAACAACAGAACATTGAGGAAAACTCGCTGCCGCTGCGCCC TAGTTGCGATCTCCTCCACAAGCTGCGCTGCTTCGTCAAAATCATTCCTTCAGAGTTTGCATCTTTTTAAAGAATTTGTG CAGATCTGGTTTTTCATACCCTAAAGGTTGTACCGAAGGATTTGTTTCTTGAAAACGATACCGTATGAGACTGGTGTTAA TAGTTTCCATCTGGGACATTGTTAGCAGTTGTTATAGAGAGTGAGAATTTTATTCAATCCTTTGTTTGATCTTGAATTTA ATTATGTATTCATGTTCATTAGAATTGGAATGGTTTTCTAGAATCAAACAAGAGCAAACTAGTGTCAAGGTGAATTCTTT TTAAGTTGGAAATTTGAATTAATAAATTCAGAGGTTTTTTTTTTTTTTTAAAAAATTTTCTGAGGGACTAAATTGACATA ATAAGATGTGAGTCATTGATGACGTGTCAAGTCAATGTGGTAAAAATGGTGACATTTGAACTTTTCCGTCTGAGGGGCCA ACGAAAACCTCAATCAAGGACTAACTTGACCGACGACGACAAATTCGAGGATGAAAAAAGACCATTTCCAAAGTATGAAG ACTTATTCGTCATAAGTGAACACAATCAGGAACCAAAATGGTTGTTTACTCTTCTATTTTCCTAAGTTATGGTTACATTA GGCAGGTAATACATTTCAAATTTTTTTCAGTTCTTTCTTTCACTTTCTCTGTACCAATCCTATCAATTGACATTAGATGC GAAATGGAGTGAATGAGATGCTAACAGCTTGCTACTGATGCTTTGATGCTTTGAGACTGTTGCTATTTGTGATGCATCTC ATTAGAAATATAAGATAAAAGAATTCATGTATTTGTAGCCAGCAAGTTATTTTTTTTAAATAATCAGTTTATGAAATATA TCAAAATATTTAT
CDS sequence (LotjaGi1g1v0299300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCCGCCGCTCCCACCGCCACTAACCAACCGTCTCTTAGGGCAGCCCATCACCAACCTTCCCTCCTTACCGGATCT CTACCTCACCACCCTCTCCGTCTGCTTCCTCTTCACCTCCTCCAGGTCCCACCCCACCACCTCCTGCCCCATCCTCTCAC TCCCTCTCAACCCTCGCCGGTTCCTCAAAATCCCCGCCATGTCTCACTCCGCCACGTCATCATCGCCACCAAACCCCACC ACCGCAAAAACCAACCTCCTCAGCCTCAACCGCCGCCACAGCTTCGCGTCCCCGCAGTGCCTCTCCGACTGGCTCAAACC GCGGTTACCCTCTGATTCCTTCGCCACATGGGGCGTCAAGCCCGGCACCAAGAACGTGCACAACCTCTGGCTCGAGATCG CCGAGGGCGAAACCTCCCTCGAAGACTCCACCCCGCCGATCCGAACCGTGCAGGTCGTCACGGTTCGTGTCACCGGGAAG GACGGGAAGTTCCTGGTGGAGTCTCACCAGGAGTTGTCGGACGGGAACGTGAGGAAGCGGGGGAGACCCTTGTCGGAGAA GATGAAGCCCAACGAGGACCCTGAATCCGCCGCCGTGAGGGCCATCAGGGAAGAGCTTGGGTCCCTGATCGGCGGCTGCG GGGGCGTGGTAGGCGATGGAATTGAGGTGGGTGATATAGTGACGATTGACCCGAATTCGTATGAGATGAGGGTGGAGGAA CGGTGTTCCGGCTCGTACCCGGGTTTGCCCGGTTGCTACGTTCTGCACACGTTGAATGCCACGGTGGAGGGTTTGCCGGA GGGTGATTTTTGCACCTATGAGCTTGATGAGTACTCTGGTTTTGATGACAAGAAAGTTGCAAACCAGGCTGTGTATGTCA GGAAACATTATTGGACATGGGTTAGTGCTGATTCCATAGAACCTTAG
Protein sequence (LotjaGi1g1v0299300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPLPPPLTNRLLGQPITNLPSLPDLYLTTLSVCFLFTSSRSHPTTSCPILSLPLNPRRFLKIPAMSHSATSSSPPNPT TAKTNLLSLNRRHSFASPQCLSDWLKPRLPSDSFATWGVKPGTKNVHNLWLEIAEGETSLEDSTPPIRTVQVVTVRVTGK DGKFLVESHQELSDGNVRKRGRPLSEKMKPNEDPESAAVRAIREELGSLIGGCGGVVGDGIEVGDIVTIDPNSYEMRVEE RCSGSYPGLPGCYVLHTLNATVEGLPEGDFCTYELDEYSGFDDKKVANQAVYVRKHYWTWVSADSIEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 306 | 306 | 4.8E-114 | – | |
| MobiDBLite | 176 | 195 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0299300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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