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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0302700 |
| Transcript ID | LotjaGi1g1v0302700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Response to low sulfur 1 protein; TAIR: AT5G24660.1 response to low sulfur 2; Swiss-Prot: sp|Q9FIR9|LSU2_ARATH Protein RESPONSE TO LOW SULFUR 2; TrEMBL-Plants: tr|G7J9Q1|G7J9Q1_MEDTR Response to low sulfur protein, putative; Found in the gene: LotjaGi1g1v0302700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73835333..73836386) extracted from Lotus japonicus Gifu genome v1.2.
AATGAAAGAAAGCAAAGCAAATGCGTCAGCATCAGAAACGTTAAACGGGGTTTATCACGCAAAGCAGGTTCATTGAACCT GGACACACCTGATTTCGATCTATTTATAGACTCGTCATGCCACAAGCATCACCACGCACCACATTACATTCACACAACCT TACCACCGCATCTCTGTTATCATCATCTCTCCAATTATAATACTTCTTTTTATTTCCCTCTATTTTAGTGCAATTTAATT CATTTTAACACGATGATGATAATGGCGGCGTTCGGCGGTGGCAACGGGAGGAAGGACAACAAAAATGCGGCGGCGGTGAC GGCGGTGTCGTCGGAGACGGAGCTCCAGAAGAGAAACGAGGAGCTCGAGAAGGAGCTGAGAGAAAGCAAGGCGAGGGAGG AGCAGATGAGGCTCCAGCTTCAAAGCGCGTGGGAGAAGCTGCGCGTCGCTGAGGAGGCGGAGGAGAGGCTCTGCTCCCAG CTCGGCGATTTGGAAGCAGAGGCGGTTCACCAGGCGCGTGACTACCACGCGCGAATTGTCTCCCTCATGGAGCAGCTCTC ACGCGCCCAGAGCCTCCTCTCCGTGGTTTCCTCCTCCTCATGAAAATGGATCTTGCATCTGCATTTTACAGCATGTGTGG GATTAAACATTGTTGTTGTTGTTAGATGTAAATTATTGTGTAAGATGATTATGATTATCCATATTAGCGTGGATCTTAAT TCATCTATGTAACTCTTGTAAAATTTTGGATGTTGTGGGTGATAATGAATGAGAATAGTTTGATTGGTTTGCAATTTCAG ATATTTTGTGCTTAGAAAATACAAATGAATACACATTTTCTATGAATCAATATCGAATTGAAGCGATATATAATTTCACA ATAGAATTGAAACCAAACATGTCCGTATACGTACATTTTCGCGATGCAAGTGAGCTTTCTCATAATTTACTCGTTTCCTA ACGTGATGGTCAACAAAATCGTTTGATGGATTAACTGAAAAGGATGAAATTTGTTTTTTACACACTTAAGGAAGAGAAAA ATGATGAGGGTTTG
CDS sequence (LotjaGi1g1v0302700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATAATGGCGGCGTTCGGCGGTGGCAACGGGAGGAAGGACAACAAAAATGCGGCGGCGGTGACGGCGGTGTCGTC GGAGACGGAGCTCCAGAAGAGAAACGAGGAGCTCGAGAAGGAGCTGAGAGAAAGCAAGGCGAGGGAGGAGCAGATGAGGC TCCAGCTTCAAAGCGCGTGGGAGAAGCTGCGCGTCGCTGAGGAGGCGGAGGAGAGGCTCTGCTCCCAGCTCGGCGATTTG GAAGCAGAGGCGGTTCACCAGGCGCGTGACTACCACGCGCGAATTGTCTCCCTCATGGAGCAGCTCTCACGCGCCCAGAG CCTCCTCTCCGTGGTTTCCTCCTCCTCATGA
Protein sequence (LotjaGi1g1v0302700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIMAAFGGGNGRKDNKNAAAVTAVSSETELQKRNEELEKELRESKAREEQMRLQLQSAWEKLRVAEEAEERLCSQLGDL EAEAVHQARDYHARIVSLMEQLSRAQSLLSVVSSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 114 | 95 | 4.3E-43 | – | |
| PANTHER | 20 | 114 | 95 | 4.3E-43 | ||
| Coils | 24 | 55 | 32 | - | – | |
| Coils | 63 | 83 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular oxidant detoxification | Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. |
Expression pattern of LotjaGi1g1v0302700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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