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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0307400 |
| Transcript ID | LotjaGi1g1v0307400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G40620.1 Basic-leucine zipper (bZIP) transcription factor family protein; Swiss-Prot: sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b; TrEMBL-Plants: tr|A0A072V2G2|A0A072V2G2_MEDTR BZIP transcription factor; Found in the gene: LotjaGi1g1v0307400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74839575..74846244) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGTGAAAAAATACTTGAAATGAACAAATGTAATTCATTGGTTTGAAGACCTTAAACGACAACGTATAGGTCTCCCT TTCCTTTTTCTTAATTAAACAATAGACTTTCCCTTTTTTAATAATTAGGCCCCGCAAACAACGATGCGAATGTGAGTGGG GGAAATGGAGCAGTGACAACCGGATCGGAAACCACCGTGTCACTCTCCTCCTCCCTCAGAAACGATGTCGTTTCCGTCTC ACCGGCGATCCCAATCGGAGGTGCATTTCCGGATCCCGGAGGATATGGACCTCGAAATGGATCCATTCGACGCCCATTTC CAAGATCCGGGTGACCTCTTATCGGAATACATGGATTCCGGATCCAAACTCCAATCTCCGATCAATGCGGAGGACGACGA CGGCGCCGGCGCCAAAAACGCCTGGCCTGGTCACCGCCGCAGCAACTCCGCCGATGCTTCTTCTTCCATGTTGTCAGAAG GCATCGAGGCTAAGAAAGCCATGTCCCCTGATAAGCTCGCTGAATTGTGGAACGTTGATCCCAAACGAGCTAAGAGGTTT TCTCTTCTTTCTTCATTCCTTCTTCATTGTACTGCATTGTTGTTGCTTTTCCTGGTTTTCGAGATTCGAATTCGCGTTTT TATTTGGAAATCGTGATTGATTGATTGGTTGTTACTTGAGGAATAGTGGAGTTCATGAATCGTGTGTTTGATGCAGGATT CTGGCTAACCGTCAATCTGCGGCGCGCTCGAAAGAGAGGAAGGCTTGCTATGTGTTGGAGCTTGAGAGAAAAATTCATTC TCTTCAGACTGAAGCAACCACTCTTTCTGCACAGTTGAATCTTTTCCAGGTTCTTACTCAAATCTACCCTTCCCTGCTGC TTCATTCATATTTAACTAACTGGTTTGAGTTGAATGAATCTTATAGATGCATGCATTGCCACCTAAAGTGATTGGTTAGT TATTTCTAGTGATATATATATATATATATATATATATACTTTACTTGGTCATTGTTGTGTTTATTGCTCAAATTTCTGGT GATATAAATGTTTTTATAGATGTAATAATTGAATTTGAAAACTCACTGCTTCCTTTAAAGCTAGAGTGAAAGAGACAATG CTAATGATAACTGATAATGGATAAGAATTCTTTAAAGTGAGCTTGTCTCTATAGTGAATAAGTAAAGCTATATCCACAGT TGGTTTAGTTTAAAGTGATTTGTAAACTTAACTTAGAAAAATCCAAGGGTCAACACACCCTTACATTCTAACTTTATGTG AAAAGAGCTTTTTCCACCAATGATTATGTTATCCATTATTCACATTTCACACACACATACCGTCATTACCCTAAATCCAA GCTATGATTGAGGATAGACTACATAGGCTAAGTCAACAGTTGCGCTGCTTTTTCTGTAAAGTCTAACAAACATCACAAAA TACATGGTCTCATCAGTATTTTTAACCTCCCAAAATAATAAATACTTGACAAAACACAACAAAATACAAATGTCTGGTCT TTCAAATCTTAGAGGTAAACATGGCAGAGTATCAAATTAAATTAACCCAAATAGTCCCAATGAAGTATTGTATAAAAACT TAAAAATTTACAAACTTACCATGTCAAAAGGTAATAACCACCTTTTAACACCATGAGAGTTGAAGAGGTAAAAATGGAAT TGAAATATATCCAATGGAAAAACATAAGAATTAACACAAAAAAGGGTGGCACATGAGAGAACCAAAATTTGAAGTGGCTG TGGCTCGATCTCCACTAATAGTTTTCTTCTCCTAAGGTTGACCTCACCCCTGCGGGCGACCCCATTTAAAGGATAATTTT TTCCTTTCTCAAGTCATGTCAATCATATTGTATCATCCCATTGAGGGTGATTCCATCTAGTTGATAGCTCTTTTTATGCA TTGGTGGCTCAAACTGTCACCCGTGCTAACGCTTAAAGGGATCTTAACATGGATATAAAAAAATACAAATCTTGAAATCA TTGCTAGATGCATACTGATCTCAATCTCTTCTTTTTCAAGTTGAGCATCTTTCAAATATTTGCTCATTTTCCAATTCATA GCTATAATCAAACATAGTTAAAAGGCATGTTTCCTCCCAAATTAATTGAACATAATTTAATCTAAAAGGATAAAGATAAG TACCAATTATAAGAATATTTAAACCTGGCCATGTTATTGTTATCCACTCACAAACTATGAAGAACTAAGTCTTTTCCAAC CACTCTAGGAAAAGCAAACAAAGTGTAAACAACTTAGTAGTTGTCAAATCTCTGCACCATTACATATTTTTGCAAGGCTT AAGACAATGAATGTCAATTTTCTTATTTGATCCAAATCTCTGCTCTCAAATTGACAATGAATGTCAATTTTCTCATAAAA ACCTGTACACAGTATCTTTGACAGTATTTAATGTGCCAAAAATGTTTTTATCCAAAGAAAATGTATGTTAGCTATTTCTC AATTTTTTGACTTATGATGTATCTCAAAGAGCACAAATAAGTGACTTTCACGGTATGGTTACCCTTCTCCCTCAAAGCTG CACCTTAACTCCAAAATTCTCAAGTTCAGCTCATCAAAGAAAATAGGATGGGTGGGGACGTAGGGTTTTAGAGTTCACCA AAATCTCAAAAAGATTTGTAGGATTTGAGAGAAAATGGAGCACAATGGGGGAAGAAAGAGAAAAGAAATAGAGCAAGGGG AGAGGGAGAATGTGTTACGCAGGGGAGAAAGTTTTTGCTTCTCAGACGAGAGGATCTTTTAAAATGTAAACCCTTTTACT GTTATTTTTTATGCATAAGTGGAATGGTTCATTTTGCACTCACATATTCATAGACACACACACACACACACACACACACA CACACACATATATATATATATATGAATGTATGTTTAGGAATGTTCTCCGAATAGAATAGCTTGGTTTTAGAAAGATAATT GGATCCAATGCTGTCAATTTTCTTATTTGATCATCAATTAGTTTGATTCTCTACTCCAATCTAATGCAGTTTGAGTTGGA TTGAGTTTTTCATTTTTCAGTTTACTTTTTTCTTTGACGAGGTTTAAATAAATGTTAAAATACATGAAAAATATAATAAA CAATAATTCAAAGTATCATTATCATATGTTTATTGCATAAGTCAAACATAACTAGACTGAGTATTCAAATTCGTGCGATT AAAAAGAAGATAACAATTTTATATTTTTTTTATATTTTCAACTTATATTAATGAAAAGTTAATAATCTAACGAACTACAT TGAAACATATTTCTAGCCAAATGTGTATAAAAAATTATATCTTTACTCTAGTATAATTTTCATAATTAAGCATAACTTGT ATACTAACTTTATAATAGAATAGCAAATATAAGTATAAGTGGTAAATTTATGAATAAAATTTTATATGTATATAAGTTTG ATTTGAATTGGATTGTATACTTTTCATATTCATAATCAAATCCGAAATTTTATCTAATCCAATTTAATTAAAACATCATT TTTATATTGTTGGTTTTTAATTTTTTTCATTTGTTTTTATTGGATTGGATCTGTTAATGAACACTCAAGTGTAAAGGCCT AGTGGATTTGGGTCAACCTTTAGGCCCTAATTTAAACAAAAATAACCTGCCATTAAATAGCCTAGCCCACTCTTAATGAA ATCCAATTTATGAATAAGACCATATTCTGATCTTCCAGTACTTCTATTCTGAATGAAATAGATTGACCAATATAACATGT ACAGCTCATAAAAGTCACTGGCAAAACTATATATAAAACCTACATTTGCCATCTGAAAAGAATGTCATAGCAAGAAAAGG ACTTAGCATCTCATATAGCTTAGTAATATTCACATTCATTTGCGCATAAAGTCATAAACAACAAAGCCTACAATGGAGTT TGGTGCTCTTGAATACTGTTTTTCCTGTGCCTAGCAGTCCAGAAGTAGAAAATAAATAAGACATAGAATGGCTCTTATGA GCACAACTTCAAGAGGCATATTGTACCATGGGCCTTCTACAGTTGATTCTCCAATTGTCTATTTGTGTGTGTACACTATG TTTGTGTGAGAGTGGTGTGTTATGTATGCATCTATCCATCAACATATATGTATATATAAAAGTTTTGCTAGTAATATTTT CTTTATTATTTGATGAAATTTCATGTTGGCCTCACTAACATTGCCCACTCTATTAGTGGGCCAGCCTGAGATTCCACTCA ACAGAAGAGAAAATGCCAAAGATTGTGTCGCTAGCACAGACATGTTTCGTGTACTGTTAGAGGATCCAATTCTTGTTAGT ATGCTTTATTTGCTTGCTGTGAAGTTTGACTAAGTTGCCTTGTCAATGTCAGGAATTGTTACCCCATTGTTTGTCGATTT TTTGTTGGCTTACTTGTTTGCTTTTGATTCTTGTGGCTATTTATTCTTCTCTAATGAAGATGCTTTCGGTTCCTTTAACT GCACTTAGTTTCCAATTTCCTAACATGTAATGGTCGGCTATCATATTATGCTACCTGAGACTTATTCTTTCTGAAACATC TTTCTCAGAGAGATACAACTGGTCTGAGTTCTGAAAATAATGAGTTGAAGCTTCGGTTACAAGCCATGGAGCAACAAGCT AAGTTATGTGATGGTACGTCTCAGCCATACAAAGAAAATCTGCTGATAAATGTCCTTGTTTCCACTTGTTTCTTGCTATA CATGTTTAACTTTGACATCTGTGACACTGGTCCTAAGAATTTTTGCTGTTTCATCAGTTTGAGAGAAATTATTATTTTTC TGAGAAGTTCTTCGTTATTGTTTTCAACTTATGATGCTTTCTTAAATATCATTTAGAATTTGTTAGATTTCATCGATCCA GAAAAAAGTATTTACAAAGTAGCATGTCTTTTATGTTGAAGTTTCAGCAATATATTGTTATTTACAACTCATTTGCATGA CTTCAACCCTCCTGTCTTAGAATAATAATTAAATGTGCAGCCCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAA GATGGCTACTGGAGAAGTAGTAACTCATGCTGACTCCTTTACTTTGGGAATGCATCATCTTTCATATTCACAAGCTCCGT TTTCCTTACATCAACCACAACATGGGCGGAGCGAACTTCAGGCTATGCAAATGTCACATTTGCATTCACTCTCATCTGAT GTATCTACTCCCCATCATCAGCCTATGTTTGACCTATCCACTCCATATGATATGTCGGAAATGTTGTCAAGTGATTCTAT CGGCCAGTTTCAGGGGCTGGACATAGGTCACAGGGTTTCTCATGTTCTGATGCCTGATGGTCGCTCCGTTTCTGTTAATA AAATTGACAATCCCTTTTGATGCAAATTTGATTGACCAACATGTCACCACCCTGTTTAACGAATTGTTCATAGACTGACA TGAGTGAGACCTGAAGGTATTGATTTTTTTTGTTTTTCTATTCAATTTTTTATTTGATTTAACTTTATGATTGGATTAGC TTATTTTGAAAAAAAGTTTAATACTTCATTTTACAGTTTTGGAAGAAGTAATTAGTTAACTAAAAATAAGTTGAAAATGC TATAAATCTGATAAATTTGTGGTTTGTTTTGGAGTTTTTTTTTTCTTTAATCATTTTGTATGACTTATGAAGATCAAAAT TTGTGAGAGGCTTTTTCAAGGTATATGATCCATTCTGGTCCAGTGGTCCTCTTTGCATATTATTTTTTTACTTGGTGAGA ATGTAGTTAACTGCACATTATATTCAGTAACATTTGTCAGTCTCTTGAGTAAACCATTTTGAACTTAAGCAAAGACTAGC AGGTGCTTGTGTCTGTTCTCATTTCCTTCCTCATTGCACAAAAAACCATGTGCCATTAATTTCAGTTGGAGCAGTTGATA CATATGGGTGGACATGGTATGCCATGGATGGACCATCATGTTTTTGTTTGTGAGTATGAGAGGTAGACATGTTTTGTTGT TTAACTCTCCTGTCAGTTTTTAAATAGGCCATTTGAATGAGCGCTTCAAATGTCCACATATCTTACTAGTTAGTTGGTCT AATGTGTTGGGCGGGAAATAAATGCAGGCACTGTTATGGTCATGGTCCCTTCTTTTATCTTTAATAGATTGTCTTTTTCA TTCCTTTTTCATTTTAATATCCACATTCTCAGGCATTCTGTGTGTTACATTTGCCGATAAGATTGCAGGAAAGTTGCATT TCATAGGGCTAGATTTTATTCAAAAGCCAAAAGCACATCAACAGAACAAGGACAGAAATAAATATGCATGATATGTTTTT GTTGACAAGTTGAATAATAACTTCTATCAATGATTTTAGACTAGTATTATCTATTATCTATTTAATTGTATTTTGTAGCA AAAAGGATGATTTGTGGAAAATATACAATGATTCCTGATTGACCGCTATATATACATGAGAACGTATCTAGACTGTCGCG TGAGAGCTAAAACGATAAATGTTGACCATACATGACTATACTATCACCATTAAAAATGCCATGTGAAAAAAGTTACATGA CTTTGTTTTTAATTTTAATTATTCATGATTAAATATAATGATTAAGATTTATGCTTCTCACTCTCACACTAAATTTTTTC TCGTATGATATATCTCATACACACATGCAT
CDS sequence (LotjaGi1g1v0307400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTTCCGTCTCACCGGCGATCCCAATCGGAGGTGCATTTCCGGATCCCGGAGGATATGGACCTCGAAATGGATCC ATTCGACGCCCATTTCCAAGATCCGGGTGACCTCTTATCGGAATACATGGATTCCGGATCCAAACTCCAATCTCCGATCA ATGCGGAGGACGACGACGGCGCCGGCGCCAAAAACGCCTGGCCTGGTCACCGCCGCAGCAACTCCGCCGATGCTTCTTCT TCCATGTTGTCAGAAGGCATCGAGGCTAAGAAAGCCATGTCCCCTGATAAGCTCGCTGAATTGTGGAACGTTGATCCCAA ACGAGCTAAGAGGATTCTGGCTAACCGTCAATCTGCGGCGCGCTCGAAAGAGAGGAAGGCTTGCTATGTGTTGGAGCTTG AGAGAAAAATTCATTCTCTTCAGACTGAAGCAACCACTCTTTCTGCACAGTTGAATCTTTTCCAGAGAGATACAACTGGT CTGAGTTCTGAAAATAATGAGTTGAAGCTTCGGTTACAAGCCATGGAGCAACAAGCTAAGTTATGTGATGCCCTAAATGA AGCACTGAAGAAAGAAGTTGATAGGCTCAAGATGGCTACTGGAGAAGTAGTAACTCATGCTGACTCCTTTACTTTGGGAA TGCATCATCTTTCATATTCACAAGCTCCGTTTTCCTTACATCAACCACAACATGGGCGGAGCGAACTTCAGGCTATGCAA ATGTCACATTTGCATTCACTCTCATCTGATGTATCTACTCCCCATCATCAGCCTATGTTTGACCTATCCACTCCATATGA TATGTCGGAAATGTTGTCAAGTGATTCTATCGGCCAGTTTCAGGGGCTGGACATAGGTCACAGGGTTTCTCATGTTCTGA TGCCTGATGGTCGCTCCGTTTCTGTTAATAAAATTGACAATCCCTTTTGA
Protein sequence (LotjaGi1g1v0307400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFPSHRRSQSEVHFRIPEDMDLEMDPFDAHFQDPGDLLSEYMDSGSKLQSPINAEDDDGAGAKNAWPGHRRSNSADASS SMLSEGIEAKKAMSPDKLAELWNVDPKRAKRILANRQSAARSKERKACYVLELERKIHSLQTEATTLSAQLNLFQRDTTG LSSENNELKLRLQAMEQQAKLCDALNEALKKEVDRLKMATGEVVTHADSFTLGMHHLSYSQAPFSLHQPQHGRSELQAMQ MSHLHSLSSDVSTPHHQPMFDLSTPYDMSEMLSSDSIGQFQGLDIGHRVSHVLMPDGRSVSVNKIDNPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 306 | 305 | 1.3E-117 | – | |
| PANTHER | 2 | 306 | 305 | 1.3E-117 | – | |
| MobiDBLite | 26 | 83 | 58 | - | – | |
| SMART | 103 | 167 | 65 | 4.4E-15 | ||
| ProSiteProfiles | 105 | 168 | 64 | 10.174 | ||
| Pfam | 107 | 165 | 59 | 9.6E-7 | ||
| SUPERFAMILY | 107 | 161 | 55 | 1.21E-9 | – | |
| Gene3D | 107 | 159 | 53 | 2.8E-10 | – | |
| CDD | 108 | 157 | 50 | 1.05353E-20 | – | |
| Coils | 130 | 150 | 21 | - | – | |
| Coils | 158 | 192 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0307400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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