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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0316400 |
| Transcript ID | LotjaGi1g1v0316400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase I subunit rpa43; TAIR: AT1G75670.1 DNA-directed RNA polymerase; Swiss-Prot: sp|O43036|RPA43_SCHPO DNA-directed RNA polymerase I subunit rpa43; TrEMBL-Plants: tr|I3SPU7|I3SPU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0316400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76275827..76281082) extracted from Lotus japonicus Gifu genome v1.2.
ACACCTACACATAAAAAAATTGAAAACTTTTATTTTAATTTTAATTTTTTTTCTTACTATTAGCACAAATGTGTAAGTGT GAGATGTGTTGAGGCTGAAGGTAGAAAACCAAAACCTAGTTCCGCCTCCGTCTCTGCCAAACGGTAACCTTGTCGCCGCC GCGCCGCGCCGCTACTCCGTCGCGGCCATCATGGAAGGGTTGAAGGTGTCGAAATCGAAGTTAACAGTATACCTTCATCC TTCCAAATCCAAACAAGTCTCCGAATCCGTTCTCCGCGAACTCAGCTCCATGCTTTTCACGTACGCTCTCGCTCTCACTC TCATCTCTCTCAATTCATCATCATCATCAACGTCACTGTGATTACACTGTGTCGTTGTTGCAGGTTCAGCGACACCTTCG ACGGCGTCGTATTGGCTTACAATGTGAAATCACTCGACCCGTGCTCCAAGATCATTCCCGGCATTACCCCCTATTTCGGT GTTAAATTGAAGGTTGATCTGTTGCTTTTCTCACCCAAACCAGACACGTTCTTAGGTACTATTCTTATCTCTCATTCTGT TGTTGTTGTTGTAATCAGAACATGTGAATCAATTAATAGGGTTTGTGTTTTTTCAATTTCAGAAGGAAAGGTTCTGAAAG TTACACCAGAGTCTATTCATGCTGTTGTGCTTGGCTTTTCTTCTGTGGTTATAACTGATAAAGAAATTAGGGATGAGTTC ATATACAGGAAGGTAAGTGCAGCATGTTTAGGATTTTAGACTATATGAAATGTGACCTGTTTAGTAGTGCTGACTGCTGA TGTAGCCTGTGTTATTTCTTGTAGAAGCGCGGGAAAGATACGTTTGTGAGCAAGTTGAACAAGCGACATGTGATCAAGGT TGGAGCCATGATTCGCTTTTCAGTCAAGAGGTGGGTGACATGCTCATAAATTGCTTCTAATTAGAGCCATGATATAATTA TTTTGCTGCATAAGAATCTGTTTTGATATCATGTTAGGCCTCTCGATATGTTTGTTTTTGAAGAAACTAGTTAGGTACCC GTGCACGGGCAAGGGTGATTTTAACCGAATTTATTATTTATAAAAATTATGATTCATGTGTACAAAAAGCACACTCAGTA TTTTCATGTTAGAGATTGCTTCCCCCTTAAAATGGCATCTTGCGTGCGTTTTTCATCCTGTGTCATAATGTACCATGCCA AAAGATACATTTTGTTGTGAAGAGAATAATACATTAATGTGTCAAACATGACCTCATGAAGCTTATTTATTTGATACATT TACAGTTGGAGCAGCATTTTTTTTTCTGTTGGTAGTTAGCATGTTTCTAAAGGGATGTGCATTTATAGTAATAGCAGTAT TTATTTATTCATGGAATTTAATTGTGAAGAGCTTTACATGTTCTGCTGCTTGTTAGCCTTCAAGCCAGTTTAAATTTTTT GATTATTACGTTGACTTGGCACTTTCTTGTTATACAGAGTTTTACAATGATCCTGGATAAAATTTAAACTTATAAGAGTT ATGAGCTGAACATTTGATCACATTATTAATTTTTGCAGCTTTGATGAAGAGATACTTCATGTTTATGGATCTCTGATTCC TGATAACACAGGCAGCATGCATTGGTTGGATAAGAACTTGGAAGATGATTCGCATACGGACAGGTTTTTCTCTTCAAGTG TATTTTTAGGTCTATGTTTTTAAAAAATATCTATGTTTTTCATTAGCTGTCTTAAAAAATCTGTACAGGAGTGCAAAGAA GAGGGGAAGTGAGGAACAACCAATAATGCTTGAGCAAGATGCTGTGGATGGAGAATCTTTAACCTTGGAAAGTGTCCAAA AATTAAAAAAATCTAAAAGGCATAAAATCAGAGAGGAATCTTGAACTTGGTATTGGAATTTTGTTTTGTAATGCAAACTG TGTTCACAGGTAATTTATCTATTTTTTAGTTAAAGAATTATATAAGAAATGAATAGAAATTTGATGATTATGATGAAGAT GTCCTGTTTGGTGACTCAGTTGCTGCATTAAGTGTTTGACAATATATCTTTTGCTTTCATAAATGTTGGAGATTTAAAAG CGTCAACATGTAAATAAAGGAGCTGTGTTCATGTTTTACAAATGCCTGCTTCCAGTCCTTTATACTTCCTGTGACACCCT TCCTACCTCGCAATAGGATTCTCTCTACCATGATAGAAAAAATATTTCAAATAGAGAAGAATTCTTTATATACCCATCTA TATTTCTATCTTTTTTTCATATAGGATTAGAGAGAAAGAGAAAGTTGCAGCACGGGTAGGATAGGATGTCCTCCAAAACA GCAAAAAATAAATACAAGGAACAAGAAAACAATTCAAGAGTGATGAAGGCTGCTCACTCTTTTCAAATCTGAAATAGCAA TCTCTTTAGAGGAACATCAACGAAATCTATCTGATTGACAGATTAAGACCTCCAATTAAGGTGTATGCACACAGGAATAA GAAGGCCGCAGAGGATCAAAGCTTCTGAAATAGTATAACTAAGTGTATAGTAACTTCCTCATAACTGTCTAAGTGACAGC TGTAGTTAGTAAGGATGTGATTTGTAACAGAATAAAAGAGGGGAAGAGGGATAATAGGATGGTATTACATTTGTAATTGT GACTTTTGGGGGGAGCACTGGCCTCTCAAAAACCAGTATCTGTAGCATTCTTCTACCATGGCCAGATCTGCTACTGCAGT TATGTGAATTTAGGGATTCCTTACTAATGCCAGTTTTAGTATTCTTGTGTGGTCCAGTTCTATCAACTGGTATCAGAGCT TCTTAGCAGGAGCTGTGGATACATGAAGGATACTGATGTGGTCAGCAAGAAGATGGTGGGGGGGGGAGGAGGAGGTTTTA AGCTATTGAGAGCACTATGGGGGCTGATCAGGTAACCCATGATGCAAGATTCGAGAGGCTTATGATGGAAAAACCCACTT GCATGGTCGCAGTGTGAGAAAACCTGCGAGAAGGAATTCAGTCACAGCAGAAGACAGACTCTAATCAGAGGGAGAACGGG TCACTGTTTGGACTCTAGAGAACACTTGAATTTTCCATATTTGAAGTAGGGAGGATGCTTTTAGGTGTGTTCAGAAGTTG GAGAGTTTCTTCTGAGTTAGAGGAGCATTGATGCTTTCAGAGAAGAAGGAACTAAGGTTGGAGGATGCAGAATAATCGAG GAAGATACAATAGCTGAGCAACTTCCTATGCATAGCATTGTGGATTCCTCCACAAATTGAAGGTTTGGGCCTGGGGGACT ATAAAGGGTAAGATTAAGAAGGTTGTGGGGAGCCTTCCCTTAATTTCATAGCAGCAGAACTGCTGGAGGATTTAAAGTCA TGTGGAGATGGGGTCTTTTTTAAATTGCAATGGAAAGCCTAATAAAACTTGAGTCTTCTTTTTTTATGGATCCTATCGGG TGGTATAAAGGGTGGGGAAAGTTGCTTACATGATACAACTGCCTGATCAAAGGAGAGAATGAAGTTCTTTTCAAATGGCA AAAGCTACTGGATTGGGAGAACATTTGGGAGCTGGCATCTCAGATTAAGGAATCATTCCCTTCTTCCTCCTCGAGTGCAA GGTGGGTCTTCTAAGGGGTATTGATATATTAAAACCTCTAATTAAGGTTGTGTATGTGTGTAGGATCTAGGAATTGGGCA CGCTTCGCCACTTCGTTCTATGATACCCAACTCCCATCTTCATCGATTTGGGGAAACCCGTGGGGAATCCATGTCTACCT TATTTTTTAATCTCCTTCCTTAATTTTATATTCTTATTCGCTTATAGAGGATAGATTTTTGGGTCTATAAGTGTGGGGGA CAAGGGTAAAGGAGAGGAGGTTAACTTTACCCTTTTTATATATAGTTAGTGTTGGAGATAAATGTAGATACATTTTCTAT TTCTTTGTTGTCTTTAGGCTTGAGAAGGTTCTTTATCCTTTTATAGAAAGTGTAAACTATGTGTTTTCTAGGTACACTGT GAAGTATAATATTATTTATAAGTATAGGTCAATGGCGTAATATCCCATAGTGCATGCCACAATTGGATGTTGTGCACCTT ACAGGCTCGGGTATAAAAACACTATTGTATTTGTCCTATGCTCATTTATCTGTTGAAACATTGAAACCAACCTTTGGTCT TGTGCTCGTAATATTTTATGGTATTGGCTCTATCTGAATGATAACTCAGAAATGAGGCCTTTTAGGATTGTATTCTTATC TGAATTCAAATATTTTTCATACTTCTAGCTGAATTTAGATTTCCAGCATCTATATTTAGGTAGCTTTACTCTATCTTTCT GGAGATTTATTAATGGCTATAATCTGATTATGGGCAAATTGGTAATGCAGAGTAGCTAAATTCATGGATGGCTGTGTTTG GACTTGCCATCAGATGTTAAGTATATTACATATTCAACGAACATCCGACAGGAAAGCAAAATTTTCATGTGTTCATTGAT AGGGGATGCTTCAACCTCTGAATTTCTAAAGGATTTTGAAAAGTAGTTGCGGTAGGAGATAGATGCACCAATTTTTTCAT TAGGTCATACTTTCAGAAACTGTGACGATAATCTGAGGGACATTGGTTATGTTTACCATGTGATTTGAGCAGCCTTAGGG GCTTTCTTTTTCTTTTTATGAAATTGCAGGTTTGCTATCTTTTCCTGTTAGTAACAGCTTGAATTTTGTAGGAAGTGGAA TCTATCCGTGTCACTTAAGCCCCCCAATTAGAAAGATGACAAGAATGGTGGATTACTGACTTAAGTTTGAAAATGTTACT TATTTATCAGATAGATAAATACTGAAATGGTCTTCAAAGTTTCCATTTGCTTAGATTACTAGACATAAGGAGCTAACAAC TGGAATGTGTAAATGATTTTTACAAATCATAGTGCTCGAGTCTGACTGTCTGAATGCTATGTGGTTCATAACACTGAAAT GGAAATCCAAGCCTTTCCTTCTGTTTTAAAACTAAATCTTTTAAGACCAAAGCTATGTTCCCACATTATCAACCTAAGGA ATCAGTTAGATATGTTTCATGTTTTTTTTATATTTTTTTAAAACAAAACAATGTCCTCGTCAACATTAAGTTTGAATGAA CAGTTTTAAAATTTCAAGAAATTTAAGTTTCTAACAAATTAAATTGTCACATTTTCCAACATGTGTTTTGTTCAGGTGGC ATATGTCTAATTCTTCTTAGATTATGTTTATATTTGTGTATTATGAATGAAAAATA
CDS sequence (LotjaGi1g1v0316400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGGTTGAAGGTGTCGAAATCGAAGTTAACAGTATACCTTCATCCTTCCAAATCCAAACAAGTCTCCGAATCCGT TCTCCGCGAACTCAGCTCCATGCTTTTCACGTTCAGCGACACCTTCGACGGCGTCGTATTGGCTTACAATGTGAAATCAC TCGACCCGTGCTCCAAGATCATTCCCGGCATTACCCCCTATTTCGGTGTTAAATTGAAGGTTGATCTGTTGCTTTTCTCA CCCAAACCAGACACGTTCTTAGAAGGAAAGGTTCTGAAAGTTACACCAGAGTCTATTCATGCTGTTGTGCTTGGCTTTTC TTCTGTGGTTATAACTGATAAAGAAATTAGGGATGAGTTCATATACAGGAAGAAGCGCGGGAAAGATACGTTTGTGAGCA AGTTGAACAAGCGACATGTGATCAAGGTTGGAGCCATGATTCGCTTTTCAGTCAAGAGCTTTGATGAAGAGATACTTCAT GTTTATGGATCTCTGATTCCTGATAACACAGGCAGCATGCATTGGTTGGATAAGAACTTGGAAGATGATTCGCATACGGA CAGGAGTGCAAAGAAGAGGGGAAGTGAGGAACAACCAATAATGCTTGAGCAAGATGCTGTGGATGGAGAATCTTTAACCT TGGAAAGTGTCCAAAAATTAAAAAAATCTAAAAGGCATAAAATCAGAGAGGAATCTTGA
Protein sequence (LotjaGi1g1v0316400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLKVSKSKLTVYLHPSKSKQVSESVLRELSSMLFTFSDTFDGVVLAYNVKSLDPCSKIIPGITPYFGVKLKVDLLLFS PKPDTFLEGKVLKVTPESIHAVVLGFSSVVITDKEIRDEFIYRKKRGKDTFVSKLNKRHVIKVGAMIRFSVKSFDEEILH VYGSLIPDNTGSMHWLDKNLEDDSHTDRSAKKRGSEEQPIMLEQDAVDGESLTLESVQKLKKSKRHKIREES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 227 | 224 | 5.5E-52 | – | |
| PANTHER | 4 | 227 | 224 | 5.5E-52 | – | |
| Gene3D | 86 | 232 | 147 | 5.8E-9 | – | |
| MobiDBLite | 184 | 204 | 21 | - | – | |
| MobiDBLite | 184 | 199 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0316400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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