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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0319600 |
| Transcript ID | LotjaGi1g1v0319600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G80960.1 F-box and Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9SAG4|FB93_ARATH F-box protein At1g80960; TrEMBL-Plants: tr|A0A072U9L4|A0A072U9L4_MEDTR FBD, F-box and LRR protein; Found in the gene: LotjaGi1g1v0319600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76884626..76886490) extracted from Lotus japonicus Gifu genome v1.2.
GAAGATATGGATGCAATTGCTGAAGCAGCCATGTTAATTAACTTGGCTGTGGATGCTTACTTTGGCTTGAAAAGTTGTAG GATTCGACATTTGCCAGAGAGCTGCATTTGTGGCGAAGTTGAGGGATGGATGAGGAAGCTTTTGGAGAAAGGGGTGAGAA AGATTTCAATGGAGCGAGAACCTGATTTTGTGATTTCTCAGCAACAACTAAGTGAATTTGAAATTTATATTAGGGGAACA ATTGATTTACCATTTGATATTTTCTCAGGTTTTGAGGTTCTTGAGTTAAAGAACTATTATCTTAAAACTTCACCCTCGAG AAATCCTCCCCAAATTCTAAAAGCCCTAACCCTTAGTGACGTGAATGTGTCACCAGATTATTTTCAAAAGATTATTTCTC ATTGTTTATCTCTTGAAAACTTAACCCTGGAGAAGTGTCATGTCGAGAATGTTATGATCAAGAGTCCAAGTCTCAAATTT CTTAAAATTTGTGACATGTTTCTATCAGAGCTTGTGGTTTTTGCAGTTAACATTGAGGTCATAGAGATTGATACGATTTT TTGCAATGCTAAGAAACTGGTTTTTAAGACTCCAAAACTTCAAGTTCTCTGTTCTTCCTATTATATGAAGAAGGAAGAAA TTCATTTTTCTCCAATTCGAGACCATCTTTTGACTGCAAAGGAGATTCTAGAAATTTCAAGTGGCAATCTGGTGAGTGTA TTACTCTTTATTTACTCCACATGATATTTTAGTAATGAAAATGTGTTGTATGTATATAGTTACATTAGTATTAATAGGGT TCTAGTCCAATAATTTAAATTACAATATCCTCAAGATTAATCTGATCCAATTACACCTTATATGAGTTAATCCCTATTTA GTTAAAATGTTGCTGATGCAATTCCTAATTTCAAACCTTAAGTTACACTAATTAATTTTAGAATTCTTGTGTAAACCTTA AACCTTTATTTCATCGAGAAAAAAAAATGTTCGATAAAAAAATTTCATAACTTTTAACACAATGAATTTAAATGTTTAGT GCTTGTTGATTATATTAATGAGTAGCACTGCTGAAACGTCTAAGAACAACCATTTTGAATGTATTTAAATTGTATAAAAG CTTTGACTATGATTTTTAGATTGGGTAGAATTACTATGTTTATTAATATTTTTTTTCCATTTATTTCATATATCGTTTTT TATCTCAGATCCCTCAAGGTTCAAAAATCCATAGTGTATTTGGGAATCTGGCAACTCTCAAGATCGATTTAGATTTGAAA AATATAAAAAATGCCACAGTTCTCTTATCGGCCCTTAAAACATGTTATAAGTTGAAGAATCTTGAAATTAATAGTCAGGT GAGATCATGATTACTTCATCCATATTCTTATTAAATTTCCATTTATAGTTAAATGCATTTCATTACACAGTTTCCCCTTT ATATAGGTTGATGATGATTATGGTGAGGTGTATAATCAGAATGAAGATGATCGTCTACCTTTCCACAAACATTTCTTTTG GCAAAGGGAGTTCTCTCAAGGTATCTGTCACAATCTTAAGACCCTTAGCATAAAGGGATTTATGGGTAGAGATTTTGAAG TGGAATTCGTAAAATACATAATAACAAATGTAGAAACGATGGAGAAGATTACAATTTGGTGCGTTGATGGTAGCACATGG GCTGAAGCAACAACAACATTGTGTTTGCTAACATTTCCGAAAGCCTCTGCCAAATTATCCATTACTCTGAAACCTGGTGT GGAGTACATGACCAAATTTGGCAAGAGCTTTGAAAAGTGGGTCTCAACTCTAAAAGACTAGAAATTGTCGCTAACTGAGA TAAATGTATTTGTTTTGAACTCTAC
CDS sequence (LotjaGi1g1v0319600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAATTGCTGAAGCAGCCATGTTAATTAACTTGGCTGTGGATGCTTACTTTGGCTTGAAAAGTTGTAGGATTCG ACATTTGCCAGAGAGCTGCATTTGTGGCGAAGTTGAGGGATGGATGAGGAAGCTTTTGGAGAAAGGGGTGAGAAAGATTT CAATGGAGCGAGAACCTGATTTTGTGATTTCTCAGCAACAACTAAGTGAATTTGAAATTTATATTAGGGGAACAATTGAT TTACCATTTGATATTTTCTCAGGTTTTGAGGTTCTTGAGTTAAAGAACTATTATCTTAAAACTTCACCCTCGAGAAATCC TCCCCAAATTCTAAAAGCCCTAACCCTTAGTGACGTGAATGTGTCACCAGATTATTTTCAAAAGATTATTTCTCATTGTT TATCTCTTGAAAACTTAACCCTGGAGAAGTGTCATGTCGAGAATGTTATGATCAAGAGTCCAAGTCTCAAATTTCTTAAA ATTTGTGACATGTTTCTATCAGAGCTTGTGGTTTTTGCAGTTAACATTGAGGTCATAGAGATTGATACGATTTTTTGCAA TGCTAAGAAACTGGTTTTTAAGACTCCAAAACTTCAAGTTCTCTGTTCTTCCTATTATATGAAGAAGGAAGAAATTCATT TTTCTCCAATTCGAGACCATCTTTTGACTGCAAAGGAGATTCTAGAAATTTCAAGTGGCAATCTGATCCCTCAAGGTTCA AAAATCCATAGTGTATTTGGGAATCTGGCAACTCTCAAGATCGATTTAGATTTGAAAAATATAAAAAATGCCACAGTTCT CTTATCGGCCCTTAAAACATGTTATAAGTTGAAGAATCTTGAAATTAATAGTCAGGTTGATGATGATTATGGTGAGGTGT ATAATCAGAATGAAGATGATCGTCTACCTTTCCACAAACATTTCTTTTGGCAAAGGGAGTTCTCTCAAGGTATCTGTCAC AATCTTAAGACCCTTAGCATAAAGGGATTTATGGGTAGAGATTTTGAAGTGGAATTCGTAAAATACATAATAACAAATGT AGAAACGATGGAGAAGATTACAATTTGGTGCGTTGATGGTAGCACATGGGCTGAAGCAACAACAACATTGTGTTTGCTAA CATTTCCGAAAGCCTCTGCCAAATTATCCATTACTCTGAAACCTGGTGTGGAGTACATGACCAAATTTGGCAAGAGCTTT GAAAAGTGGGTCTCAACTCTAAAAGACTAG
Protein sequence (LotjaGi1g1v0319600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAIAEAAMLINLAVDAYFGLKSCRIRHLPESCICGEVEGWMRKLLEKGVRKISMEREPDFVISQQQLSEFEIYIRGTID LPFDIFSGFEVLELKNYYLKTSPSRNPPQILKALTLSDVNVSPDYFQKIISHCLSLENLTLEKCHVENVMIKSPSLKFLK ICDMFLSELVVFAVNIEVIEIDTIFCNAKKLVFKTPKLQVLCSSYYMKKEEIHFSPIRDHLLTAKEILEISSGNLIPQGS KIHSVFGNLATLKIDLDLKNIKNATVLLSALKTCYKLKNLEINSQVDDDYGEVYNQNEDDRLPFHKHFFWQREFSQGICH NLKTLSIKGFMGRDFEVEFVKYIITNVETMEKITIWCVDGSTWAEATTTLCLLTFPKASAKLSITLKPGVEYMTKFGKSF EKWVSTLKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 403 | 392 | 2.3E-35 | – | |
| PANTHER | 12 | 403 | 392 | 2.3E-35 | – | |
| Gene3D | 48 | 375 | 328 | 6.1E-13 | ||
| SUPERFAMILY | 87 | 334 | 248 | 2.71E-9 | – | |
| Pfam | 320 | 355 | 36 | 1.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0319600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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