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LotjaGi1g1v0334200.2

Overview

Field Value
Gene ID LotjaGi1g1v0334200
Transcript ID LotjaGi1g1v0334200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Coiled-coil domain-containing protein SCD2; TAIR: AT3G48860.1 coiled-coil protein; Swiss-Prot: sp|Q8RWD5|SCD2_ARATH Coiled-coil domain-containing protein SCD2; TrEMBL-Plants: tr|A0A0S3RFL7|A0A0S3RFL7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:79274963..79283442) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATCGGAGGAGAAACTTGAGCCCGGTGTACACGCGGCAGTGGAGCGGCGGTTCAAGCAGCACCGGCTCATCACCGGC GATGTCTCCGGCTCATCCTCAGTCGCGCCTCGGTCCTTCCTCCACCGGGATTTCCACCGTCAAGCGCACTCAAAACGTAG CTGCCAAAGCCGCCGCGCAACGCCTCGCTCGCGTCATGGCGTCTCAGACCGCCGACGACGACGGCGACGAAGATGACGAT CTAGGATTCCGGTTTAGTGCTCCTCCTCCTGCCGCTCTTTCCTCTTTCTCCAGCAGTAACAGAAGTAACAGCGCAAACGC AAACGCCAACGCCATCCCTCCGTTTTCGGTTGCCAGGCCGAACAGATCTCCTTCCCCTGCGGTAATTCTCTGTATTTCAA TTCTGATGGTGTTTACAGTTTACGTGATTATTTGCATGGATTCGTTTGTTGACTTGTAGTGATGCTTTGTTTGGTAATAG TTGTTAATTTGATGCAAATGCAATTGATAGTGATTGAATGAGAATTTGAGATCTGAATTATGCATTGGATTGATAGCTAC TGTTATTTTAAGATTATGGATTTATTCAATTGTTGTCACTACCAAGTTGTTGTTGTTGAGCTAATGGGAATTTGATGTTT AGTTAGGTCGGAACTTTGTAGAGCACACCCCTGCAGTGCGTTCAACGTCAGCTGGAAGACCGGCAGTTTCAGTTCGGTCA ACACCGGTGGTGCCGCCACCGAGCAAACCTACACTCCGAACGCCTATGCTCGTTCCTCCCATTGATCCTCCTACCAATAG GAGTAGAGAGAAAAGGTAGTAGTATTTGGCCGGCCACCTTATTTCTTATGGTTTTGAAGCTGTGGTGATTTCCTTGTAAG TTGGTTTAGTGTCTTGTAGCAGTTATGCATTTAGCCAATGATATCATATGGTTGACCTGATTCATCATAAATTTAGAAGA ACTAGATAGTCATCCAAAATACTTGCAACTTTACTTCACTGACTTATTCTATAATCTAACTGCCCCAATTCTGTCTGTTC CGAAGTTTCTATATTGATTTGTATGACTTTTGTATGAGTTTGGTCTCTTATCATCTCTCAGCAATTTTACCCTAAAATAT AGGAAGTTCGTGTAAGCGGGTATTTCTTGAAGATTCAAATACTCTATTTAAATAAAAATAGATATAATAAAGTCAGTTGA CATGCATGCTAGTGTAAGCTAAGCCATCAGTCAAAGTTTAGCCTGTTTCCACAAATTCGTCACTGTTTTATTTATTTAGG ACAGAGGAATATCATTTTCTCTTCCTGCCCCACACTTTCTGATGAGCTTTATAACAATGTTGAGTTCATGAGTCTTGATT TGGTAAAATATTACTCTTGCATGTAATAGTTTCTTTTTTATGTATGAATGAACTCAATCTTAGTTTTTGACATCATATAT CTATCTATATATCTTAGTGCGTGTATGCGGATTGCATCGGTAGGCTAACAAACTCTTAAGTTGTCGGCCATTAGGCAGTA TTGTTGACCGTTTCTTCTTCAAATTTTGTTGGTCGATCATTTCAGGTTTACACCAGATATCACTATCAGGCAGCTTAACT CGAAAGACACAGGAGATCAGCGTGAAGCTTCTGCACTCCGTGATGAAGTATAGTACTTACATGCATTAATTTGGTCTCCA CAAATTAAATCTGATGATCCTTATAGTTGGCTATAGTGCTTTAGTATTTCTTAAACCTTATTTTGTTGCATTTTGTATTT GTCATTCTTACAGAATGGGTTTTTAATCTGATTCGTATTGATGTCGCAGCTTGATATGCTACAAGAAGAGAATGAGAATA TATTAGAAAAGGTATGCTTATTCACACCCGAACAAAGTCGGTGTTTTGTTCAAGTCAGTGTTGTATAAATGCCTGACTAT ATTACAGCTAAGACAAGCAGAGGAAAAACGCCAAGAAGTGGAGGCCAGAGCTAGGGAACTTGAGAAACAGGTGACTTGTT TTTGCTAAACTAAACTTTGAAACTGTTAGGCGTGAGCCTTAGAAGAAAAATAGGGCCTGGAAAATGTATAGGAGAAGGAA TAAACAATGGGCCAATAAGGGTTTATTAGGGTAGGGTGGGGAAAAATTTTTCAGTCCTTTAGGAGTGCTGGATATTCAGT ATTCCCCCTTTACAAAAGCAGTGTCAAGTGACAGATTTTTTTATTTTAAATTAAAAAAGTTTAAATAATATGGATAGCTA GATATAGGCAGGTGTTATCATTTTAATTAAAGGAGTATGTACTCTTGGAGGACCATAAATTTTCCCGTCTGTAGTTAGTT ATGAACAGTTACACTAGTAGTTAGGTTGTCAGAGGTTCAATAGTGGGAGCTATGCAAAAAAAAACTGTAGGGGGGGGGGG GATGCTGGAATAATCAATAGTTAATACCATAGTCTAAATATCATATTTTGCATAATCACTACTATGCTCTTATTCATTGC GGTCAGTAACTGTATGGAGTAAAATCTACGTAACATAGAAGTTTCTTCGTACTCATAGCTATAATTATAAATTCTGAGTT TGCGATATATGCATCCCTGTTCATTTTGGTTTTGGCAGGTTGCTTCGCTTGGAGAGGGTGTATCCCTGGAGGCTAAATTG CTGAGCAGGTAACCTAGCTTTGAGTTCCCTTACACACTGGTTGGAACTGAAATTTTGTTTATTTTTTAGGTTATGGTTTT TGCGTGGTATATTTGCAGGAAGGAAGCTGCTTTGCGTCAAAGAGAGGTATGCTGGAAGAATGGATATTAGATGTGACCGA AATATGAAAATAATGATTATCTGAAGTTTGAAGTGTGTTGTGATCACTATACTAGCTCTTCTAAGTTCTAATCCCAAAAA CGTTTGCGAAGAATGAATTTGCAGCTGGTTCTATAATCTTCACTTGATGTTTTTGTGCATAAAGCTCTGTTTCTAGTTAC AGTTTCTTCTTTGAGTTATGGGTTTTGAGCAACAAGTTCATCAATGCTGGTTCTTTCAAAGAATGTCCTTGGAATACTCA ATATTTTTGTCACAGGCTGCTCTCAAGGCTGCAAAACAATCACAGAATGAAAGAGATGAGGATGTTACTGCCCTTCGTGT GGAGATTCAGGTTGGTTTTGATGGAAGCATGATGTTCTTTCCACCTTTTAATTGTACCTTATGCCTGATCTGATCAATTG TACTGGTTTACGTTATATCTGTCATCTTTGTATTGTCAGAACCTAAAAGATGATGCTACAGCAGCTGAGGAACAACGGCA AGAAGCTGAAGCTGAAGCAAAGGCTCTTCGGACAATGACACAGAGAATGATTTTGACCCATGAAGAAATGGTTTGTTTTT TCTATTAAAATGAGAATTAACAACCATTCATTCTTCCATCTGTCTCAATGCATCTTTTTATTTGTCTTTTAGGAGGAAGT TGTCCTGAAGAGATGTTGGCTTGCCCGCTACTGGGGTCTTGCTGTAAAACATGGTAACAAATTTGTGCTGCTCTCTACTT TGTGCAGGGATAAAGTCGATCTTTAGTTTTTTTTTCTACGATCTGAAAATCACGCCTTGCAAAAATTTGAGAAGCATATT TTGCTAAAGTCTGTTTATCTATTAGCAATAACATATGAGTGCTTATATTCTTGTGGCGTGTTACTTTCAGGCATATGTGC AGATATATCACAATCCAAGCATGAACATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATATCTGCTGGACAAA AGGCTAAGGAGGAATCATGGAACAAAAGTGAGTGTGCATTGGCACCCGAAGATTTAGTTTAAATTATCTTGTAAATTAGA TACAATGACATCTAACCAAAGAGCATGGACCAGGTGCTGATGGTCCTGATAGAAGCAAACTTGTTCGTGATTTGAATGAT CTCGCTGGGGAAGGAAACATTGAGAGTATGCTTTCAGTCGAGATGGGTTTGAGGGAACTTGCTTCTTTAAAGGTTCTCCA TGAATGTTATTTTAGTTAGTGCTTTGTTTGTTTAATTCTTTATCACATTTTCTTCTTAGACATTTTTTATACAAAGATTC ATACGTTAAAGTCTGTTAATTTTTTAAAGCATGGATTTGAAGAACCCAACCCTTTACGTATGAGTTTGGTTGATATTTGA CTTCCTTTCAGTATTTTGGGTTGTTCCATATCGTGGTCATCATTTTCCGTTATTGTTAAGTCCTGAAAGAATACTGATAG GCTCATAGCTCAAGTTTATGCTAGAAAAAGAAAAGGGCTGAGTAACTTGTATATGAGAGGAGATGAAAGTGAGGAGCTAG GAATGTACTTGCCGCTGAGGAAGTCTGAAATGCTAAAGGACAGTTTGTTAGAAGGGCGTCGAATGGTGGTAACATATTGA GTGATGAGGGCCTTTTTTCTTAATTTCTTTTATTTGGGGGGCGGGGGTGTTGTCTCTATTGTTTTCTTCAACTTCTCCAT ATTTTTGTGTTGCTGTATGTATTCTGTACCAAGGCTGATTGCAAGGAGCTGGGCTCCTCCACATAGACTCTTGTACAGTA ATTTGCAGTCCCTATCAATATTTAAATAACTTTTTTTTTTTTTTACTTTTTTAGGTTGAGGATGCTGTTGTGCTTGCATT AGCCCAACACAGGCGGCCAAATTTGGTCCGGCAGTCTGTTTTAGGTATGTTGATTCATCATCTTGTGTCTTCTTCAAATC TCAGTTTTCCACTTGTTAATCAATTTGGTTACTCTCAATGTTTTCATTTATCTATTACTTCTTTCTATTTTCTACCTGCA GTTAGTACAATTTTCAATGTTAAGTCGATTGCTTTCCTCTTTTGATTTCAGTTTTTGGTTAATTCAGACAATTACTTTTG ATCTATGTGCTTATTTGAATAATTTTCTCAGTTTTTTTATTATTCTGGCACTATTCAAAAGTTGACAGTTTAGTAATAGA TGATTTGTATTATATTGTTCACATATTCTTAACTTATTTTCAGATTCCAAAGCACCTGGGGATGCCAAATATTTGGAAGC ATTTGGTAAGAATTAAGTTGTCAGCTTTTATTTAGTTCAGTGTTTAATTTGATTTTGATGTTTAGATATTTTATGTTTTC GTAAGAAATAAGTTTTCAGCTTTTGTTTTGGTGTTTAATTTTATGTGCTTAGTGGTGGTGTTAAGTTTCTGGAGATACAA ACCCTATGGAATATTATGAGAGTCTAGGTTGTACTTCTGCATTATAGGGTTTCTCGACTTGTCTAGGTTGTATATTATTT GCATTCATTTCTCTATATTATTCTTCTCTTGTGGGGGGGGGGGGGAATTGGGATTGCCTCTAGACCTATGAGCCTGGATA CTTTATATGTATAGGAGATACGATATGACATGACTCAAGATACAATACAGTCTAGACTCTTTAGATACATTAACACAACT GTATAATATATCATTATAGATAAAAACAGTATTTGTAAACACATATTGATATTTTTTGATAATATATAACCATATAATAA GATGATGAATATAATTGAAAGAAAAACTTAATAACAGAACAGCATAAGACATCTTTTTCCTCCCTTGTCTATATCAGTAT ATTCTTTCTCTAATAAATATGCGACAAAAATTACATATATTTTTTCCTAACCAGTATTAAGATGTAAAAGTCGTCATTAG TCCTATTTAAGAGAAGTCTTCGCTCTATTCAATTGCCTACTATGTACCGCCTAATACTAACTGTATGTCTGTATCATTTT CATTTCTTCTATTCCCATTGTTCAAAAAAGCACAGCTTTTACTCTTGTTCATCAATAGACAGTTCTGCCAATTTATGAAG TCCATCACTGTTATCCAATAGGTCATGCACATATCCAACAAATTTGTCTCTCTATTAGTACATTCTTTATCTTTCTTTGG CAAAAGTCAGAGGCTGGAAAGCACACAAGCCAAGTCCACTATGCTCTTAGGATCCGTTTTGCTCCTCTTCAAGGAATAAA TAAAGGAGTATCCACTCCAATTCTTCTCTATCATAAACCAGCTCTCCTAAAGCTTAAGTTGTTTGTTGAAAATACATGAA TGGTTTTATATTATACTTCTAAAACGCCCTCTTATGCAAGAGCCCATTAGGCTTGAAGCAAGGACACTGCGCAGACCCAC TTACCTTGTGTTGAAACTCAACTTTTTATAAGAATAATGGGGGAAACAAGGATTGAACTGTAGATCTCTTGGTTATATAG GCTCTGATACCCTATCATGGACCAACTCTCCCAAAAACTTAAGCTGCTTGGTGAAGGCATGTGAGTAGTTTTGTATTATA CTTCTAAAACTCGCACAACATGATGAAGAAAAAGGTTGTTTGTACCGGAAGTTGCATCCCAAACATATAGAAGGAGTGTC CCTAACTTATCGGATAATAGTTTCTTTTGCAAATTTAAAAAAAAGGGATTGTGTGTGTATCAATATCAGATATGGGTACG GCAACGATACTTCCGAAGAATCTGAGCTTCATAGCTCTGGACAATACAATATACATGAGTTTTATGTATGGTTTGATCAG ATATGCTCGTATCTGTGTGGGAAGATGATGCCATTTCTATATTGTAAATGGTATAGTACATTATCATTTGTTACCCTTGT CTTCTACAAACTAAAATGATTGAAGTATTTTGAAGCATACTCCAAGACACGTGGAAAACTTATTTGGCTAGACCATACGT GTTAGGATCCAAGAGGTTCCTCCACTTTTGAAGGTTTATTCTAAAAGAGGGCGAAGAGATGAGGGGAATTACTTGCTTAG ATTATCTTTTATTTAGTAGTTGATATTTTATTTTAGTATAGTATCTTTTATTATTGTGGGTTATCTTTTATTATTAGGAT TTGATATATTATTTTTAGTTTATAAATAGGATTAGAGTGTGAGGAGGGGAATCATCTAAGATTTATTGAGTTGTAACTGG GTCATTGGGAACCAGCCCTTTGGAGGAATCAGCCTCGTAGCACTTAATAAATTCCAGACTTTATTATTCTGCAATTTTAC CTTTTTGCCCCTATTGGTTGTGGTTGGCTTGTTAGGGATTTCTCCTCTCTAACAATACGTGAAAATTGTGACCTTTGATT GAAGTGTATAAACCCTATTGATTACAGACTGAACTAGGCTTTATGTATGAAGCCAATTACTTATGCGTTATTTTGCTATA GGCTTAATTGCAACTTTGGTCCCTGACGTTTACCAATTCCACAATTTTAGTCCCCCACCTAATTTAATTACACGGATGGT CCCTGACTTTGCTGCCCGTCTGCAATGTTGGTCCTGTCATTTATTTGTTAACGGAAGAGGCTTACGTGGATGTCCAATTG GAGAGAGAAAGAAGGACTGAAGAGAGAGGGAAGCACATGAGTTGCACGTGAGACCTGCAACGGTCATCTTCTACCCTCTT CCTCCTTAAAAAACAGAGCACTGTGAGGAAGATGTTTCGAAGATTGAGATTTAGCGAAAAGGGAAGAGATAAAGAACGAA CGAGTCCCTAGAGGCAAGGAAGAAGGTTGAATCAGTTGCTGGTCTCTTTCTCTCTCCAATTCAACTTCCACATCAGCTAA GTGACCATCCACGTAAACCTCCTCCATTAACAAACAAACGGTAGGACCAACGTTGCAGACTGCCAACAAAGTCAGGGACC ATCTGTGTAATTAAATTAGGTGGGGGACTAAAATCGTGGAATTGGTAAACGGCAAGGACCAAAGTTGCAATTAAGCCTTT TGCTATATATTCCATAGACATGGCTGCATTCAGCCATTCCTCATTTGTAAATGGAAATGTATCTAAAAGATGGATGACCT GATGATTCTTTGCTGATATTCTGTTGTTTGTTTCCTGCAGAATTAAGTGAAGAAGAGGCAGAAGATGTTCTTTTCAAAGA GGTAAGTTACTTGTTCTTTGAAGATTTTGATGTTTATCCCCTTAAACACTATATACTTGGCTTTAGTTTTATGAAATTGT AATATGTATCCTTTAAATGATATTATAGATTGTTCATTTCTACCAGCATTTCTCTCATGATTATAGCATGTGTCTACATG TCTTCTCAAAATCAGCAGTCAGTTTACCTCGGTCGATATCATGTTCCCTGTTGAACTTCCTTCTGTGGAATTCAGATTCA TTTCTTAGGAAAATCAGTTAATTATTTTGTTGTGTTTTTACTTATTAATCACAATCTTTGAAACGAAATTTTGATTGGAG GCTTCAGCTTTTGGATAACCAGTCTATATCAGAATTGAATTTAGATTATAGCTATTTTAAATATAGGATGCATCATGCAC ATATTATTTAATATGCTTACTCTATAAACTATAAATATTTGCAGGCATGGTTAACTTATTTCTGGAGAAGAGCTTTATTT CATAGTGTGGAAGAAGATATTGCAGAAGAGCGGCTTCAGTTTTGGATAGTTCGCAGTGGACAGTCACCAACATCACATGA 

CDS sequence (LotjaGi1g1v0334200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCGGAGGAGAAACTTGAGCCCGGTGTACACGCGGCAGTGGAGCGGCGGTTCAAGCAGCACCGGCTCATCACCGGC GATGTCTCCGGCTCATCCTCAGTCGCGCCTCGGTCCTTCCTCCACCGGGATTTCCACCGTCAAGCGCACTCAAAACGTAG CTGCCAAAGCCGCCGCGCAACGCCTCGCTCGCGTCATGGCGTCTCAGACCGCCGACGACGACGGCGACGAAGATGACGAT CTAGGATTCCGGTTTAGTGCTCCTCCTCCTGCCGCTCTTTCCTCTTTCTCCAGCAGTAACAGAAGTAACAGCGCAAACGC AAACGCCAACGCCATCCCTCCGTTTTCGGTTGCCAGGCCGAACAGATCTCCTTCCCCTGCGTTAGGTCGGAACTTTGTAG AGCACACCCCTGCAGTGCGTTCAACGTCAGCTGGAAGACCGGCAGTTTCAGTTCGGTCAACACCGGTGGTGCCGCCACCG AGCAAACCTACACTCCGAACGCCTATGCTCGTTCCTCCCATTGATCCTCCTACCAATAGGAGTAGAGAGAAAAGGTTTAC ACCAGATATCACTATCAGGCAGCTTAACTCGAAAGACACAGGAGATCAGCGTGAAGCTTCTGCACTCCGTGATGAACTTG ATATGCTACAAGAAGAGAATGAGAATATATTAGAAAAGCTAAGACAAGCAGAGGAAAAACGCCAAGAAGTGGAGGCCAGA GCTAGGGAACTTGAGAAACAGGTTGCTTCGCTTGGAGAGGGTGTTATGGTTTTTGCGTGGTATATTTGCAGGAAGGAAGC TGCTTTGCGTCAAAGAGAGGCTGCTCTCAAGGCTGCAAAACAATCACAGAATGAAAGAGATGAGGATGTTACTGCCCTTC GTGTGGAGATTCAGAACCTAAAAGATGATGCTACAGCAGCTGAGGAACAACGGCAAGAAGCTGAAGCTGAAGCAAAGGCT CTTCGGACAATGACACAGAGAATGATTTTGACCCATGAAGAAATGGAGGAAGTTGTCCTGAAGAGATGTTGGCTTGCCCG CTACTGGGGTCTTGCTGTAAAACATGGCATATGTGCAGATATATCACAATCCAAGCATGAACATTGGTCTTCTCTAGCTC CTCTTCCTTTTGAACTTGTCATATCTGCTGGACAAAAGGCTAAGGAGGAATCATGGAACAAAAGTGCTGATGGTCCTGAT AGAAGCAAACTTGTTCGTGATTTGAATGATCTCGCTGGGGAAGGAAACATTGAGAGTATGCTTTCAGTCGAGATGGGTTT GAGGGAACTTGCTTCTTTAAAGGTTGAGGATGCTGTTGTGCTTGCATTAGCCCAACACAGGCGGCCAAATTTGGTCCGGC AGTCTGTTTTAGATTCCAAAGCACCTGGGGATGCCAAATATTTGGAAGCATTTGGCATGGTTAACTTATTTCTGGAGAAG AGCTTTATTTCATAG 

Protein sequence (LotjaGi1g1v0334200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDRRRNLSPVYTRQWSGGSSSTGSSPAMSPAHPQSRLGPSSTGISTVKRTQNVAAKAAAQRLARVMASQTADDDGDEDDD LGFRFSAPPPAALSSFSSSNRSNSANANANAIPPFSVARPNRSPSPALGRNFVEHTPAVRSTSAGRPAVSVRSTPVVPPP SKPTLRTPMLVPPIDPPTNRSREKRFTPDITIRQLNSKDTGDQREASALRDELDMLQEENENILEKLRQAEEKRQEVEAR ARELEKQVASLGEGVMVFAWYICRKEAALRQREAALKAAKQSQNERDEDVTALRVEIQNLKDDATAAEEQRQEAEAEAKA LRTMTQRMILTHEEMEEVVLKRCWLARYWGLAVKHGICADISQSKHEHWSSLAPLPFELVISAGQKAKEESWNKSADGPD RSKLVRDLNDLAGEGNIESMLSVEMGLRELASLKVEDAVVLALAQHRRPNLVRQSVLDSKAPGDAKYLEAFGMVNLFLEK SFIS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 473 473 6.1E-215
PANTHER 1 473 473 6.1E-215
MobiDBLite 1 187 187 -
MobiDBLite 9 53 45 -
MobiDBLite 91 111 21 -
MobiDBLite 153 175 23 -
Coils 206 254 49 -
CDD 213 304 92 3.20676E-4
Coils 265 285 21 -
Coils 290 327 38 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Cytokinesis by cell plate formation The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0334200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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