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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0335300 |
| Transcript ID | LotjaGi1g1v0335300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT5G05800.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O74990|COG4_SCHPO Conserved oligomeric Golgi complex subunit 4; TrEMBL-Plants: tr|G7IP36|G7IP36_MEDTR Myb/SANT-like DNA-binding domain protein; Found in the gene: LotjaGi1g1v0335300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79446247..79449696) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGAGGTTTTACATCATTTAAGGTATCATACCCTCATTTAAATTAAGGTACCACACCAAGCACCTTAAAAAAATCATA TGGAATAAAATCAACAAATTAATCCTACTTTTCTCAATAAGCATAACAAATTGAAGTAAAACATACAATGCAGGAAATGC TCAACTTGATTAAATATCTGCTGCGGAGTCCGATTGGGTTGGAAACAATATGTCACGCCAAAGAGAAACTGAAATAGGAA CAGAGTTACAACATAAGAATATTATGTACGTAAATAATTATTATTAGAGTGGAAAGAAATCACGATTTTTGTTCTTTTTT TACGTTAGAATCATTAAGCAATCAAATTAGACGAGAGAAACTTCATTAGTACATGAAGATAATTCTCAATCCAAATAAAG CAGAAACTTGAGAGAGCAAAATTGGCAAGATAGTCTGCCACCGTATTACTCGTGCGACAAACATGAACTACAGAAACACT GGGAAGCCCAAACACACTCAGACGCTAAATAAGAGAAATTGCTATTAAAAGACCTCACGCATTGCAAACAATTAGGTTAT TTATCTCTACAATCACCTTTTGAAAACCCAAATCAACGCCAATCGGAGGGCCCACCTCAAAGCTAGAGGCTCACCAGAAC CGAAAATGACTATTATTAGAAATTAGAAGAGTTATACTCAACCACAAAATCTAAATCAAGAGTTATAAAGACTATTTATA CTCTATCTCTAGTCAGTGTGTGTTTGGTTGTGAGTCTCGAACGTGGATCTGAAGCTGAAAATCGGATCTGAGGCTGTAAC GTGGATCATTGATGTAAAATTGATGTTTGGCTACTCGCGTCTGAGAACCGGATCAAGGAGGGAACGTGGATCTGGCTGAA GCATCCTATACCAGCTTCTCCATCCATCAAACGTGAATCTCTGAAACCATGGCAATACCAAATCTTAAACTTTTGAAACC TATCTCTTTGTGCCCCTTTTCCCTTCATCCACTGTCATGGTTAGATTTTTCCACTGCCAATCGATCCTCTGAAGAAGGGC TTGCAATTCCATGCCAATCGAAGAAGAACGTGGTTAGATTGTTCTCTCTGTTTTTGGTGGCTGTAATCAAGGGAAAGGAA AACAAAGTTGCAATGTGGGAATAATAAATTTCTCACCGATGTGGGACTAACAAAAATAAAAAATCATATTTGACATGGAC ATGGTTGAAGGGGTATGCTGGTATCGCACATTGGGGAGCTTTGTTGCAAATTCAAGCTGTTTCTCACTAGCATCCGTGGC TATGACATTCTGGTATAGTTCAGCTAACTGAAAATACCAATTACTTTTGGTCAGAGAATAAGCAATCCTGAAAATTGACA AATTAAGAAGCACTCCTTATACCACTATAGAAGCGAGCATACACATGTAAATTCAATGTTACAATTCATAACTTGACTCA AATTGATGATATCACCGACATGTAAATTCACATGTAAATTCATAACTTCACTGCCATATATATTAATGATATCACCGACT TGTTTCTTATAAACTATGTAAAAAAGCATAATATTTATTGCACATACAGTAGAATATTTATTATATAGCACTTCATCGGA TTGAAAAAAAAAAGCAGGTCATTAGATCAGAGTAGTTACTGCACACAGGAGAATATAAATGAACTCTAAATTTCTACCAA CCTTATTATTAAGTTCAACTACACTTACCAACCAAAATTTACTGGATTTCCTTACTTCCTTCATTTGTTCTTTTTTGAAG CTTATTTTTGCTGTGAAGTTTTCTGTTGGTGTGGCTGAATCCCGCTGCTAGTGTGTGCCATGTAAGTTCTTACTTCTTCT CATATTTCCATTCCGATTTCATTTGCTGTTTAAGTCACATGCTACTGATATGTCTTATTTTAATTTCTTAGTTCTATAAA AAAATTTGTTAGTTGAACGAATGGCTGGTCCCAAAATTTTGCTAGTCCTCAAAGCTTTATTTGATGGTCCCCATATTATG TTTAAACATGTTAAAAAAGTGTGATTTTTGAACATTTTGTTGCATTCTTGTCTATCAAACAAATATTCTAGGCAAAACAA AATACAACATATGTAAAAGAATATAATATATACAACGTAATAATCTTTCTCTATATATTCTTTTTATTTTCCCTTTCTTG CTGGTAGAGGAGAAAAGGTTTTTCTAGATCTCTTTAAAAATGACAATAGTAGCTTGAGATTTTTATAAAGATTCTATGTG CAGTTTATGATATTTGTAATGTCCTATGTATATAGTAACATGAGTACTTCTAAAATACCAAAAGCTTCTTGGGACGTTCA AGTGACTGGATATTTCGTACAAGCATGCTTGGTTCAAGTTGCTAATGGAGAACGCCAAGGTACCAGCTTTACTAAGAAGG GGTGGATAGGAATTGAAAAGCAATTTAATGAGTTAAGTGGAAGGAAATATAACAAGGATAAGTAGAAAAATAAGTATGAT AATTTGAGAAGGGAATGGCGAACATGGTATAAAGTATGTGGCAAAGAAATTGGCGTAGGATGGGATCATGTGAAACACAA CTTTGATGCACCAGATGAGTGGTGGGAGAAGAAGATCATGGTATGTAATGATGGTATTTGTGAAAATTGCAAGTCTGAAA TTTATATTTAGTGTTTTCCTGTTATAACTAGACTATTGGAACATGCAGGAAAACCCCAATTATGAAAAACTTAGGGAGAA GGGACTTCCATTTGCTCATGACTTGACTATACTTTACAAAGATGTTGTGGCAACTGGCGAGCATGCATGGGCACCCTCAT CAGGGGTAATGCCTAATGGGGTTCAAGATGCTAGTGATGGATACCGCCCATCCTTAGAAAATCTTTGCCCTAGTAGAGAG GAAGGCTCAGCTGATAGTGAAGATGATAGTGTTGGAGCAACAGATGGTTTAGCTGGTATTAATTTAAATAGTTCACAAGG AAATGTGAGTCAAGGAGTTGAGAGTCAAAGGACTGGAGAGAAGAGAAAGAGAATTACTCAATCTGAACAGATAAAGAACA AAAAAAACTCAACTGCCTCCTCAAGGATAGCAGATGCTGTTAGTGTGATTGCGGAAACATGCAAGTCACGCAATGATGCA GTGGACAATTCATCCATTGGTGAAGTGATGGCTGAGCTTCAGACCATTGAAGAAGTTTCAAATGATATTGAGTTGCATAC CAAATGTTGCCTACTAATGATGCACAAGCCAGCTAGGGATATGTTTGTTGCAATGCGAGGTTTAGAAGAGAAAAGGTTGC ATTGGCTTAAGGTTGCGGCAAATAAGCCCTAGCCATTATGACTATGTAGGACTAGTTATAAACTATCTTAATTGTGTACT CTCTTTATTGTGAACTAGCTAGTTGTGTCTTTCTTGTGTACTCCATTTACCTTGAACTAGTTATGACTTTGTTGTGTACT CTCATTATTG
CDS sequence (LotjaGi1g1v0335300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCCCAATTATGAAAAACTTAGGGAGAAGGGACTTCCATTTGCTCATGACTTGACTATACTTTACAAAGATGT TGTGGCAACTGGCGAGCATGCATGGGCACCCTCATCAGGGGTAATGCCTAATGGGGTTCAAGATGCTAGTGATGGATACC GCCCATCCTTAGAAAATCTTTGCCCTAGTAGAGAGGAAGGCTCAGCTGATAGTGAAGATGATAGTGTTGGAGCAACAGAT GGTTTAGCTGGTATTAATTTAAATAGTTCACAAGGAAATGTGAGTCAAGGAGTTGAGAGTCAAAGGACTGGAGAGAAGAG AAAGAGAATTACTCAATCTGAACAGATAAAGAACAAAAAAAACTCAACTGCCTCCTCAAGGATAGCAGATGCTGTTAGTG TGATTGCGGAAACATGCAAGTCACGCAATGATGCAGTGGACAATTCATCCATTGGTGAAGTGATGGCTGAGCTTCAGACC ATTGAAGAAGTTTCAAATGATATTGAGTTGCATACCAAATGTTGCCTACTAATGATGCACAAGCCAGCTAGGGATATGTT TGTTGCAATGCGAGGTTTAGAAGAGAAAAGGTTGCATTGGCTTAAGGTTGCGGCAAATAAGCCCTAG
Protein sequence (LotjaGi1g1v0335300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENPNYEKLREKGLPFAHDLTILYKDVVATGEHAWAPSSGVMPNGVQDASDGYRPSLENLCPSREEGSADSEDDSVGATD GLAGINLNSSQGNVSQGVESQRTGEKRKRITQSEQIKNKKNSTASSRIADAVSVIAETCKSRNDAVDNSSIGEVMAELQT IEEVSNDIELHTKCCLLMMHKPARDMFVAMRGLEEKRLHWLKVAANKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 202 | 201 | 3.8E-86 | – | |
| PANTHER | 2 | 202 | 201 | 3.8E-86 | – | |
| MobiDBLite | 35 | 122 | 88 | - | – | |
| MobiDBLite | 82 | 100 | 19 | - | – | |
| MobiDBLite | 101 | 115 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0335300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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