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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0337800 |
| Transcript ID | LotjaGi1g1v0337800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 30, putative; TAIR: AT5G63480.2 mediator of RNA polymerase II transcription subunit; Swiss-Prot: sp|Q9FMV4|MED30_ARATH Mediator of RNA polymerase II transcription subunit 30; TrEMBL-Plants: tr|A0A151TR64|A0A151TR64_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0337800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79814450..79818095) extracted from Lotus japonicus Gifu genome v1.2.
CTAATCTGAAATACCTAAATTTGAAACCCTAAATTTGAAATCACAACACCAACTCATCAAAATACACATGATTCAAAATA CAAATGATTCTTGGTCGTGGATTCCAACAAATTACCTCAGTGTGGTCGGTTTTGAAACACAGATGATTCTTGGTCGCTTT TGGTCGTGATGTGTGGGTCGATTTGGGTGCCTCTGGGTCGCTTCTCTTGAGACCTCCGAGAGTTGATGTTCTGTCCCGTT ACAAATGTGAATCTGAATTGATAGTTTTGTTCTATTATTAACTGAGTCCGACATTTGAACATTCGGAGGAGTCCGAATGT ATAACATTCGGACTAAAACACGGAGGGGCAATATTGGTTTTTCCCCACTTTTAAATGGGGTGGAAATTCTAAAATAGGGG GTGGGAAATCTAATTCCCCTTCTTTCCTTCTCTGGATCAAATCTAGGGTTTTATATTCCCTTCGTCGCCGAATTTTGCAG CATTCGCCGGAAGACAGTGAGTGAGAATGGAAGAACAGTCGATGGTGATCGCCACAAACAACCCCAAAACCACGCAGGAA CTCTCCATGGAAGGTCAGAGATTCCTCGAAGAAACCATACAGCACGCTTACCAGATCCTCTCTTCCATGAACGACGAGCT TTGCAACCCCGTTTTGTGGTCCACCTCTCCCTCTTCTTCTTCTGCCGCTGAACCGAATCTCCCCTCCTCAAACGGTGATG CCGCTTCCGATAACTCCAGCCACAACGCTGACAGCGGCGCCGCCATTCCCGGTGCTGGAGGCGCCCTTGAAGAGGCTCGC TTGCGATATAAGAATGCCGTCGCTGGGCTTCGGACCGTTCTCGCCACTATTCCTGATTCCCAGGTGTGATTTTAGACCCT TGTCTTGCAATTTTGGTTGGTTTATGCATTTAGAATCTGCATTGTGCTTGAGAACTGTGCTTAATGCTTTATGTTAGAAA TTCGTTATAGTTTGGTAATAGTTATTCTCTTGGCAATGAATTCTTACTGATTATTTGATTTTTGCACCATTGAACTGGTT TGCAAGGATTTTCAAATTCTAGGCAATTGAATGCCATTCGTTTGTAAAACTTTTTGCTTGAATTGAGTGATTTTCAATTC GCTTTATTTGTCAAGAGTAGTTGAATTCCCTCAATAATAATGATGATTTTAAGTGATGAGGGTAAAGAGATAATGGATCA AATGATGGAAAGGGCATCCATACCAAACAATATTGTAAGACCGAGAGGTGAAAGTGATAAATTGGAGGATTGAAGATCGA GTTGTAAGATCCTTCGAGAAATACAATATTATGCTTGAAACATATGCACATGCTTATATAATCACTTAGATAAGGAAAAT AGCCTTTGAATCACATAAGCCCTCTAGAAGCCATATTCCTCTTTAATTGAATCATAACCAATAGAGACAGAACCACAACA CAAGACACTGAAACAGAACCATCAGGTCCAGCACAGAGCACACACCACAAATGCAGTAGCTTTGAATCCTTCAATCAATG AGGGGCAAATGAAGAATAAGACAGCTGGTCGAAGAAGACAGCACTGCAGGGCAAAGAAGACAGAGGGTTCTAACAAGGAA GAACAGAAAAGCATGTCGGAGTTCAAACAAGGAGCAGTAGCAGACAAAGAAAGCTCTGGGCAATGAAGAAAAAGATTGCA GGTCGAAATTCAAACAAGGAACAACAAAGAGCAGCAGCTTCGAATCCTTTGATACTTTTAGGCTAGGATTTCCGGTGAAA GAGGGAGTGAGCTCCCCGTTCTGAACTAATTTACTAGAGTGGAAAAAATAGGGTGAGAAAAATAGGTATCGTGGTTCAAC CCGAAAGCTCAAAGCCCATCAAAAGTGGAATCGAATCGAATCTGTGACCCTGCGCTCTAGATTGCGATCTTGATTGGAGA TGACTGTTGGGTGCGTTAGATCACACGATCTTACTATCTCATTTTACTCATCAATTTTTTTAACTAGGGAATTGTGATTT TTTATTTCAACTCCTGTAGATATCTTTCTTACTAGGTAAAAGACAATACAAATCTTGCAGTTTTAGGGTTCGGTTTGGCA TCACTTGCCATAAATTCATAATTTACTAGTTCTATACCATTGTACTGTGAACTGGAGTTTGAAGTTATTTCTGGCATAAT GATGATGCAGTAAAAGAAAATTCTATCCTGATGTTAAATGATGCATAAAGGATATAGCAGACTATCTTGCATCTTCTTTT TCATAAATATTTAATTACATACATTTTTATTGTGAGCTTTATAAGTTATAACTATAATTTTATCCAGTGAAGTTGTTTTC CCCAGTTAAACTAACTTGGTTAGTATTATAGGCAAAAGCACTTGACGGTGATTCAGCTGTTAGCCCCGCAGATGAAGCTG AAATTGAGAGGTTGGAAGAGAGAGCCTCTTCTCTAAGAAAGGTTTGTTGTAATGCGGTTTTAATAAATGTATTAACATCT ATGTAAATACTTGATGATGTTCACCACAAAGCCTTAACATCTAAATTGTTCATTTGGGCTAAGATTTTAGTTGATCAGGA TTGAGAAAACACTTTTCAATCAAATATGACTGCAGTATAATGAGTTTTGGACTTCAGTCTTTTGTTGAAACAATTTAGTT TAGCAAAAAAGTTTAGGTTCTGGACTGAAGTTGTTGAAGGCCTGTATTCTTTTTAAAAATATGTTATTGTGTTGAACCTT GAACTTCTGCTATTAAATGTAGGAACTTGCCAACAAGAACTTGCACCTGAAGGCACTAATAGATCAACTGCGAGAACTTG TCACCGATATAGCGACATGGCAAAGTCCTTTTTCAACCAGAAGTTTGGCATGAGTACTTAATTATGTATAGTGATATCAA AAGATGGAAACCTGATCCAGACTGCAGATTACAATAAATGGTGACAGTGCTTCTTGATACTCTAACCCTTGAAGTTGCAT CAGTAGATCTCAATATTTAATGTTCCTAAAACTATGATTTCTAAGTTGTGGAATGGTAAGAAGTGGATTAAAAATGATTG TCCAATGGACTTGTATTTTGTAGAATTATTGGGAAATTTTCGAAATAGAAACGTGCAATTCTTTAATAGCAATTTGATGT AATTTTTCATTTGGCTGTTGTCAAAATTGTACGTAAACAATACTCGTTTGAGGTTTGAGAAGAATGTCTGTTTTTGGTCC AAAGAAGAAACTCTCAATGATCTTGTTAACCACGTTTTGCAATTCATAGCTCATTCCTTGGCGGGAGAAGTATTAGGGAA AAGAACAGGAAGGTGGTTACGTAGTTCTATGTGAGAAGTATCTTTTTTTCTTCTTTATTAAGGAGTCAGATTGAAAGTAA GGAAATGGAGCAGTATCTTGCTCAAGATTTTCTTTTAAAAGTTTTGTCTGCCACTTGAATTGAGAAAAAGTATCACTCTC TGGAAGAGTAACGGGGGAATGGACCCTCCACTCTTCCTCCCCTTTCATTTTGAAAAAGAAAAAGGGAATCCAGTAGTTAC TGTATATAAAGAGAAAGTATCAATTCCTTATAATTTCTTTACTTTCTCATTCAGTTACCTATTTCCAAACATGGTCTGAA TGTCAAGATTTCATTTCATTTTTAGTGGAATTCTGCTTGTTGCAGA
CDS sequence (LotjaGi1g1v0337800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACAGTCGATGGTGATCGCCACAAACAACCCCAAAACCACGCAGGAACTCTCCATGGAAGGTCAGAGATTCCT CGAAGAAACCATACAGCACGCTTACCAGATCCTCTCTTCCATGAACGACGAGCTTTGCAACCCCGTTTTGTGGTCCACCT CTCCCTCTTCTTCTTCTGCCGCTGAACCGAATCTCCCCTCCTCAAACGGTGATGCCGCTTCCGATAACTCCAGCCACAAC GCTGACAGCGGCGCCGCCATTCCCGGTGCTGGAGGCGCCCTTGAAGAGGCTCGCTTGCGATATAAGAATGCCGTCGCTGG GCTTCGGACCGTTCTCGCCACTATTCCTGATTCCCAGGCAAAAGCACTTGACGGTGATTCAGCTGTTAGCCCCGCAGATG AAGCTGAAATTGAGAGGTTGGAAGAGAGAGCCTCTTCTCTAAGAAAGGAACTTGCCAACAAGAACTTGCACCTGAAGGCA CTAATAGATCAACTGCGAGAACTTGTCACCGATATAGCGACATGGCAAAGTCCTTTTTCAACCAGAAGTTTGGCATGA
Protein sequence (LotjaGi1g1v0337800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQSMVIATNNPKTTQELSMEGQRFLEETIQHAYQILSSMNDELCNPVLWSTSPSSSSAAEPNLPSSNGDAASDNSSHN ADSGAAIPGAGGALEEARLRYKNAVAGLRTVLATIPDSQAKALDGDSAVSPADEAEIERLEERASSLRKELANKNLHLKA LIDQLRELVTDIATWQSPFSTRSLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 181 | 181 | 2.0E-73 | ||
| MobiDBLite | 48 | 89 | 42 | - | – | |
| MobiDBLite | 48 | 83 | 36 | - | – | |
| Coils | 130 | 168 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi1g1v0337800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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