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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0339100 |
| Transcript ID | LotjaGi1g1v0339100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase subunit beta; TAIR: AT5G50410.1 ribonucleoside-diphosphate reductase subunit beta; Swiss-Prot: sp|F2T0M0|NSCA_TRIRC Non-reducing polyketide synthase nscA; TrEMBL-Plants: tr|V7AX78|V7AX78_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0339100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79981709..79986756) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACCTATATTTTTTTTTTCTTCCACCCAAGTTTCTTTCTGGTCAGTTGTTACTTGTTACACACACACAGTTACACT CATAAACCAAACAAGCATTTGTGAATTGTGAACACATTTTTCACTCCTTTAATTATTCATCGTTCCTCTTTCCTCTTGTC TCACTGACACAGGAAGTAACAACAACATGTGGAACTCCGAGGAGACAAATGCAAATGCAAGCACAGCACAAGACCAAGAG CAAGAAGAAGAAGAATGGGAGACCATGGCTCGAGCGTGGCTCAGCTCCTTCCCAGAAGCGAAGGAAGTGAGCATGCCCGA GGTCGAAGCATGGATCGATTCCAACCTCTCTTCTATCCCAGAGGGTCTCCGATCCATGCCTCGCCCTGATCTCTGTCTCA GACTCATTTCCATTCAGAATTGCATGAGGCTCCCCAATCAGGTTCTTCATTCTTCATTTCTTAGCTATCAATTCTAGATA GATATTAATCACTCACAAAGATCCTAGCTTTAATTGAACCCAATACTGAAATTCCAAGCCAATCCTTCATGGTTAACTGG GTAGCATAAAAATTCATGCTTTATTTGAAACCAGAACAAAATAAATAGAGTAAAGTCTAATATTTAGTATTCATTATGTA ACTTATTTATTGTCTCCTACACAACTACACTCTGAGGTGAAAAATTCTCAAATTTGAGCCAACCCCATCAATGCTGAGAG GAAATGTCTTCATATTAGTCTGTGACCTGTTCCATGCTGATGAATGTTTTTATAATTTGTCATTGCATCTCAAGATAGGT GCACTGGGATGTGGGATTAAGAGCCTGTTTGGATGCAAACTAAGAGTACTTATTGTATGTAGCATTGTAGCTTATTTAGT GCATTTTTTAGTACTTATGGTCTTTATCCAAACGGGCTCTAAGTTGGTTATTTATGGCTAGGCCTAGAGAAGACAACCCT TTGGTGTTTGTGTGCATAAGCTTTAGCTTGATGTAGGGGAAAAGGGTATACTTGATGTTGATCTATGATGGGGCATGTGG TTAGATAAGAGCATTATAGATTTTTCACATTTATGTAACCTTCTAACTGCCTAAGTCAGCGGATATAACTTAACAATTTG CTGAAGATTGTCAGAGTTTGTGGATGTGGTCTTGAGCTTTTGAATTTGAGAACTTACTTTTTGTTTGTTTAGAGTAGCAT CATTTCAAGATAAAGGAAGGTTTTATCTATTCATATTTTTTTATAAATAAAAGTAGGACATTTTTTCTAAATTTTGTAAG ATCGGTTTATCTTGTTACCGATATATATGAAGGAAGTTAGGCTTTCTTGTGTTTTCTAGGTGACATACATACATGCTTAT GGCCTCATGCTTCGGGCCAAGAGTCCCTTTACTGGCTTATTTAAAACAGGGTAGTTTTTAAACAAAATATGCCAGACATA GTAAGCTGTTACTCATGATATGGTCTAATCTTTCAAATGTTGCAGGAAAGGGAAGTAAATCAGCTTGATCTTCCACATGC ACGGTTTCAACGCACTGACCAATGGATTCCGGTTTATTCATGGTTAGAAACTTTAGATAAGGATGAAGTGGTTAAGTCCA AGGAGATTTCTGAATGGTTAACACAGAACCCTAATATCCAAGAACAGTTATGCTTGAGGCATTCTCGATATCATTTGATG CACTACGTCAAAAAATGCCATTTGAAGATATTAAAAAGAAGGGGAAAGAAGAAGGTATTGAATTCTTCCCCATATTTGTT CTGTTTTTTAACTGTTCAGTTGAAGTGATCGCTTTGTATAGAACCCACATTGACTAGAGATATGACCAAAGTAAAGCTTT ATAAAGGCTTGAGCAATCTTCATCTTGTGGTTGGCATTTAGGAGTTAGGCTTTATAAAGGCTTGAGCAATCTTCATCTTG ACTGAAAGTTGCATTTTCAGTCATCTTCTCCTCAATTGATGCCACACCAATATCTTCTCTTACACGATCATTGTGTATCC TGCTATTTCTAGTATGACCACTTATCCATCTTAACATTCTCATTTCTGCTACTCTAACTTTTTTTCCTCATGTTGACCGT TAAAGCTCAACATTCCCAACCATAGAGTCTAGCGGTTCTGTAAAACTTTTCTTTGAGCTTGATAGGTACTTTGAGGTCCT GGTGCATTTCTCTACTTAACCACCCAACTTGGATTTTATGTGTAACATCTTTGTCAATTTCCCCATCATTTTGTATAATA TATGCCATGTACTTAAACTGTGAAACCTGTGGTATGATGTCATTTCCAATTTTTACTTCCAAATTACTTCGAACATCTGT CTTACTAAAATTGCAATGCATATAATCCGTCTTACTCAAGCTGAAGCGAAAATCTTTAGATTCCAAATTCTTTCTCCAAA TCTCAAGTATAGAATCAATTGCTTCTTTTGATTCTTCAATTAGAACTATATCATCTGCAAACAACATGCAGTTAGGAACG CTCTTTGGTATATCCCTGGTAAACACGTCCAATACTAGATTAAACAGGTACAGACTCAAGGTTGAGCCTTGATGTAAATC TATCTTTATAGAGAAGTCATCAGTCATTCCCCAGTGGTCTGTCAGGATTGGTCGTTCTGTGTCATCACCTCCCACCTATC CTACACATTTGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTTGCCATTGGTACTCCG CATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCT ACTTATGCGACAAGGAATTTCTCTACCTTAGGACAGTTGGAGTTACTGCCGCCGTTTACCGGGGCTTCCGCATTCCCCAT TGATGTGAAACCCGTTGACTGTCTTTTCAGAATGAGATCGGAGGAATCTTTATTGCCTGTTGAAAGGTTCGATATGGGTT TTGATATGGTTCACTGGGTACGGGGTTAAGTCCTCTCTCAATGAAGAAGGGGCTGCAACTCAACTCCTAAAGAAATCCAA AAGTTGCCTTCGTGAACCAGCAAGAAATAAGGGTCACTTCACTTGAGCTAGGGCAAGAATTCTCACACTTGTAGTTTCCC CCTCATACATGTCTTGTATAGCATGAATATAATCCACGCGAACACTTTCTTTTCCATTGCCTGCCACAATACTTCCCTTA ATACACGACAATATACTTTCTCCAAGTCAACATCATATTTTGTAGGAGGTAGATGGCTTCTGTTGTTTACCTTCCTGGCA TAAAACCAAACTTATTCTTCACTATTGTAGTCTCTTCCCTTATTCTATGTTCAAACACCTTTTCCCATAATTTAACATGG CCCGTATGTTTTATCCCTATATAGTTACCACAATTCTGAATATCTCCCTTGTTTCTATACATAGGGACCAAAATACTTCT CTTCCACGCATCTGACATTTGTTTAGTTGCACAACCTAGTGAGATATTCAGTGTGGTGGGCTTCCGCCTTTTGATGTAGC CATCTCGTTGCCCATTCTCTTCTAGGTCCAATAAGCCCCCCCCCCCCCCCCATAAAACAGACCATTTCAATTGCAGTTTA AATATCATATGTTATGTAATATATTTGTTAGTTTTATTACTTCACTATTTGTTTACTGGACAGGGTCTAGAACAGCCTGA CAAAGACACATCATTGAAGGTTCAGAAAGATGTGGTGATGAAACACTCAGCCCCACTTTCATGTATGTGTGTTATCCATC TTACTTTCTAAATTTTCTCTGGCACTGTACAGAACAATGTATGTTTCACTTTCACTCATCTAAAATGGCACATTTCTGTG AAGTAGCCTGTATGTGGGAGCAACTCATTATTTGAAACCAAAGTATGGGAAAGGAAAGGGAAAGGAAGAGGAAGGAATTA AATTACTAGAAATGCTTTTGATACAATACAAATGTAGTTTTGATTGTCATCAATTTATTTCTTTTCCCAATATATTGTGG TTTGAGCTTCTCTGTATCTATGGGTTACATTTTCTAAACTTTGTCACTTTCCTCTAGCCTTCGGTGCATTATGTTTATGT CTGCAAAGTGTTTTGGGTTCTTAACTTGTCTAAGGAGGGAAATCTGGGAAGATTAATTGAGTATACTTTTCACTTTGGGT CATTTGGCCATGGTTTCAACATGTCTCTAATTCTGTAAATGTCAGACCTTAAAAAAACTTGTGTTTTGAATCCATAGGTG TTATGGGAATCAGGTTATTACAGTTACTTTATAATTATAGGTGATGCTCTTTTCTCTGTAAATTATGCAGGCAGTTCTAT GAACAATCTGCCCAAAGATAGCGATTTGTTCGTGGCCAAAAGAAAAGAAGCCTATCGCAAATATGAGATGTAAGTGACAT AAGATATTTTTCTTTTTGTGGCATCTTAGGTGTACTGAAGTTTCTCAATCATCATACTTGAGTTTTCCTTACATTGATTT GGTTTCAGTTTAGTGGAGTTGGAGAAGCTGCTCTCCCCAGTATTCTCGAAGCCTCCTAGCATAACTCAATGAGACGGTGT CGGAAATATCTGCAGATTGGTATTTTCAGTGAATGGGAACTTTCTGATTCTGCCCCAATCCAGTGGTACCCTTGTGCTAA TTGATCTTCTCCTAATTATCATTCTCTGAAGCAATGCTGCCTCTCCTTGAGTGTTTACTTTAAAGCTTAAAGGGTAACTA TTTGATGCAGGGGATAGTAGATTATAGTTGTTTGTCTATGTAGAAAGTAGTGTAGCAAAATTTCGTCATCATCATCTGGC CATTACATGAGCTTTGGAAATCATGAATTAGAGTTGGTCCAGAGATTTCCTGTTATGAGTAATTAAACATTTTCATGAGC TCCTGTAAGGTGATCATCAAATGTTGTTAGTTGTTTAAACCTAGTCAACTGCTCTGCATGGGTTAACATCAAATCTAGAA CTTTCTGGTATTCACCGGATAGAAAGGGTGGCCTCAATTACCGTGTGAATTATTGTCACGCCCAAGTAACATTGAGGGCT CTTTTGGT
CDS sequence (LotjaGi1g1v0339100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACTCCGAGGAGACAAATGCAAATGCAAGCACAGCACAAGACCAAGAGCAAGAAGAAGAAGAATGGGAGACCAT GGCTCGAGCGTGGCTCAGCTCCTTCCCAGAAGCGAAGGAAGTGAGCATGCCCGAGGTCGAAGCATGGATCGATTCCAACC TCTCTTCTATCCCAGAGGGTCTCCGATCCATGCCTCGCCCTGATCTCTGTCTCAGACTCATTTCCATTCAGAATTGCATG AGGCTCCCCAATCAGGAAAGGGAAGTAAATCAGCTTGATCTTCCACATGCACGGTTTCAACGCACTGACCAATGGATTCC GGTTTATTCATGGTTAGAAACTTTAGATAAGGATGAAGTGGTTAAGTCCAAGGAGATTTCTGAATGGTTAACACAGAACC CTAATATCCAAGAACAGTTATGCTTGAGGCATTCTCGATATCATTTGATGCACTACGTCAAAAAATGCCATTTGAAGATA TTAAAAAGAAGGGGAAAGAAGAAGGGTCTAGAACAGCCTGACAAAGACACATCATTGAAGGTTCAGAAAGATGTGGTGAT GAAACACTCAGCCCCACTTTCATGCAGTTCTATGAACAATCTGCCCAAAGATAGCGATTTGTTCGTGGCCAAAAGAAAAG AAGCCTATCGCAAATATGAGATTTTAGTGGAGTTGGAGAAGCTGCTCTCCCCAGTATTCTCGAAGCCTCCTAGCATAACT CAATGA
Protein sequence (LotjaGi1g1v0339100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNSEETNANASTAQDQEQEEEEWETMARAWLSSFPEAKEVSMPEVEAWIDSNLSSIPEGLRSMPRPDLCLRLISIQNCM RLPNQEREVNQLDLPHARFQRTDQWIPVYSWLETLDKDEVVKSKEISEWLTQNPNIQEQLCLRHSRYHLMHYVKKCHLKI LKRRGKKKGLEQPDKDTSLKVQKDVVMKHSAPLSCSSMNNLPKDSDLFVAKRKEAYRKYEILVELEKLLSPVFSKPPSIT Q
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 14 | 233 | 220 | 1.2E-17 | – | |
| PANTHER | 14 | 233 | 220 | 1.2E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0339100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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