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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0339100 |
| Transcript ID | LotjaGi1g1v0339100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase subunit beta; TAIR: AT5G50410.1 ribonucleoside-diphosphate reductase subunit beta; Swiss-Prot: sp|B7PXE3|SPAST_IXOSC Spastin; TrEMBL-Plants: tr|V7AX78|V7AX78_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0339100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79981895..79986260) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGAACTCCGAGGAGACAAATGCAAATGCAAGCACAGCACAAGACCAAGAGCAAGAAGAAGAAGAATGGGAGACCAT GGCTCGAGCGTGGCTCAGCTCCTTCCCAGAAGCGAAGGAAGTGAGCATGCCCGAGGTCGAAGCATGGATCGATTCCAACC TCTCTTCTATCCCAGAGGGTCTCCGATCCATGCCTCGCCCTGATCTCTGTCTCAGACTCATTTCCATTCAGAATTGCATG AGGCTCCCCAATCAGGTTCTTCATTCTTCATTTCTTAGCTATCAATTCTAGATAGATATTAATCACTCACAAAGATCCTA GCTTTAATTGAACCCAATACTGAAATTCCAAGCCAATCCTTCATGGTTAACTGGGTAGCATAAAAATTCATGCTTTATTT GAAACCAGAACAAAATAAATAGAGTAAAGTCTAATATTTAGTATTCATTATGTAACTTATTTATTGTCTCCTACACAACT ACACTCTGAGGTGAAAAATTCTCAAATTTGAGCCAACCCCATCAATGCTGAGAGGAAATGTCTTCATATTAGTCTGTGAC CTGTTCCATGCTGATGAATGTTTTTATAATTTGTCATTGCATCTCAAGATAGGTGCACTGGGATGTGGGATTAAGAGCCT GTTTGGATGCAAACTAAGAGTACTTATTGTATGTAGCATTGTAGCTTATTTAGTGCATTTTTTAGTACTTATGGTCTTTA TCCAAACGGGCTCTAAGTTGGTTATTTATGGCTAGGCCTAGAGAAGACAACCCTTTGGTGTTTGTGTGCATAAGCTTTAG CTTGATGTAGGGGAAAAGGGTATACTTGATGTTGATCTATGATGGGGCATGTGGTTAGATAAGAGCATTATAGATTTTTC ACATTTATGTAACCTTCTAACTGCCTAAGTCAGCGGATATAACTTAACAATTTGCTGAAGATTGTCAGAGTTTGTGGATG TGGTCTTGAGCTTTTGAATTTGAGAACTTACTTTTTGTTTGTTTAGAGTAGCATCATTTCAAGATAAAGGAAGGTTTTAT CTATTCATATTTTTTTATAAATAAAAGTAGGACATTTTTTCTAAATTTTGTAAGATCGGTTTATCTTGTTACCGATATAT ATGAAGGAAGTTAGGCTTTCTTGTGTTTTCTAGGTGACATACATACATGCTTATGGCCTCATGCTTCGGGCCAAGAGTCC CTTTACTGGCTTATTTAAAACAGGGTAGTTTTTAAACAAAATATGCCAGACATAGTAAGCTGTTACTCATGATATGGTCT AATCTTTCAAATGTTGCAGGAAAGGGAAGTAAATCAGCTTGATCTTCCACATGCACGGTTTCAACGCACTGACCAATGGA TTCCGGTTTATTCATGGTTAGAAACTTTAGATAAGGATGAAGTGGTTAAGTCCAAGGAGATTTCTGAATGGTTAACACAG AACCCTAATATCCAAGAACAGTTATGCTTGAGGCATTCTCGATATCATTTGATGCACTACGTCAAAAAATGCCATTTGAA GATATTAAAAAGAAGGGGAAAGAAGAAGGTATTGAATTCTTCCCCATATTTGTTCTGTTTTTTAACTGTTCAGTTGAAGT GATCGCTTTGTATAGAACCCACATTGACTAGAGATATGACCAAAGTAAAGCTTTATAAAGGCTTGAGCAATCTTCATCTT GTGGTTGGCATTTAGGAGTTAGGCTTTATAAAGGCTTGAGCAATCTTCATCTTGACTGAAAGTTGCATTTTCAGTCATCT TCTCCTCAATTGATGCCACACCAATATCTTCTCTTACACGATCATTGTGTATCCTGCTATTTCTAGTATGACCACTTATC CATCTTAACATTCTCATTTCTGCTACTCTAACTTTTTTTCCTCATGTTGACCGTTAAAGCTCAACATTCCCAACCATAGA GTCTAGCGGTTCTGTAAAACTTTTCTTTGAGCTTGATAGGTACTTTGAGGTCCTGGTGCATTTCTCTACTTAACCACCCA ACTTGGATTTTATGTGTAACATCTTTGTCAATTTCCCCATCATTTTGTATAATATATGCCATGTACTTAAACTGTGAAAC CTGTGGTATGATGTCATTTCCAATTTTTACTTCCAAATTACTTCGAACATCTGTCTTACTAAAATTGCAATGCATATAAT CCGTCTTACTCAAGCTGAAGCGAAAATCTTTAGATTCCAAATTCTTTCTCCAAATCTCAAGTATAGAATCAATTGCTTCT TTTGATTCTTCAATTAGAACTATATCATCTGCAAACAACATGCAGTTAGGAACGCTCTTTGGTATATCCCTGGTAAACAC GTCCAATACTAGATTAAACAGGTACAGACTCAAGGTTGAGCCTTGATGTAAATCTATCTTTATAGAGAAGTCATCAGTCA TTCCCCAGTGGTCTGTCAGGATTGGTCGTTCTGTGTCATCACCTCCCACCTATCCTACACATTTGATCAAGGTTGTCACT GCGAAGCTATAGTTAAGGTGCACGGGGTCTTACCGTCTTGCCATTGGTACTCCGCATCTTCACGGAGAATTCAATTTCAC TGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCTCTAC CTTAGGACAGTTGGAGTTACTGCCGCCGTTTACCGGGGCTTCCGCATTCCCCATTGATGTGAAACCCGTTGACTGTCTTT TCAGAATGAGATCGGAGGAATCTTTATTGCCTGTTGAAAGGTTCGATATGGGTTTTGATATGGTTCACTGGGTACGGGGT TAAGTCCTCTCTCAATGAAGAAGGGGCTGCAACTCAACTCCTAAAGAAATCCAAAAGTTGCCTTCGTGAACCAGCAAGAA ATAAGGGTCACTTCACTTGAGCTAGGGCAAGAATTCTCACACTTGTAGTTTCCCCCTCATACATGTCTTGTATAGCATGA ATATAATCCACGCGAACACTTTCTTTTCCATTGCCTGCCACAATACTTCCCTTAATACACGACAATATACTTTCTCCAAG TCAACATCATATTTTGTAGGAGGTAGATGGCTTCTGTTGTTTACCTTCCTGGCATAAAACCAAACTTATTCTTCACTATT GTAGTCTCTTCCCTTATTCTATGTTCAAACACCTTTTCCCATAATTTAACATGGCCCGTATGTTTTATCCCTATATAGTT ACCACAATTCTGAATATCTCCCTTGTTTCTATACATAGGGACCAAAATACTTCTCTTCCACGCATCTGACATTTGTTTAG TTGCACAACCTAGTGAGATATTCAGTGTGGTGGGCTTCCGCCTTTTGATGTAGCCATCTCGTTGCCCATTCTCTTCTAGG TCCAATAAGCCCCCCCCCCCCCCCCATAAAACAGACCATTTCAATTGCAGTTTAAATATCATATGTTATGTAATATATTT GTTAGTTTTATTACTTCACTATTTGTTTACTGGACAGGGTCTAGAACAGCCTGACAAAGACACATCATTGAAGGTTCAGA AAGATGTGGTGATGAAACACTCAGCCCCACTTTCATGTATGTGTGTTATCCATCTTACTTTCTAAATTTTCTCTGGCACT GTACAGAACAATGTATGTTTCACTTTCACTCATCTAAAATGGCACATTTCTGTGAAGTAGCCTGTATGTGGGAGCAACTC ATTATTTGAAACCAAAGTATGGGAAAGGAAAGGGAAAGGAAGAGGAAGGAATTAAATTACTAGAAATGCTTTTGATACAA TACAAATGTAGTTTTGATTGTCATCAATTTATTTCTTTTCCCAATATATTGTGGTTTGAGCTTCTCTGTATCTATGGGTT ACATTTTCTAAACTTTGTCACTTTCCTCTAGCCTTCGGTGCATTATGTTTATGTCTGCAAAGTGTTTTGGGTTCTTAACT TGTCTAAGGAGGGAAATCTGGGAAGATTAATTGAGTATACTTTTCACTTTGGGTCATTTGGCCATGGTTTCAACATGTCT CTAATTCTGTAAATGTCAGACCTTAAAAAAACTTGTGTTTTGAATCCATAGGTGTTATGGGAATCAGGTTATTACAGTTA CTTTATAATTATAGGTGATGCTCTTTTCTCTGTAAATTATGCAGGCAGTTCTATGAACAATCTGCCCAAAGATAGCGATT TGTTCGTGGCCAAAAGAAAAGAAGCCTATCGCAAATATGAGATGTAAGTGACATAAGATATTTTTCTTTTTGTGGCATCT TAGGTGTACTGAAGTTTCTCAATCATCATACTTGAGTTTTCCTTACATTGATTTGGTTTCAGTTTAGTGGAGTTGGAGAA GCTGCTCTCCCCAGTATTCTCGAAGCCTCCTAGCATAACTCAATGA
CDS sequence (LotjaGi1g1v0339100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACTCCGAGGAGACAAATGCAAATGCAAGCACAGCACAAGACCAAGAGCAAGAAGAAGAAGAATGGGAGACCAT GGCTCGAGCGTGGCTCAGCTCCTTCCCAGAAGCGAAGGAAGTGAGCATGCCCGAGGTCGAAGCATGGATCGATTCCAACC TCTCTTCTATCCCAGAGGGTCTCCGATCCATGCCTCGCCCTGATCTCTGTCTCAGACTCATTTCCATTCAGAATTGCATG AGGCTCCCCAATCAGGAAAGGGAAGTAAATCAGCTTGATCTTCCACATGCACGGTTTCAACGCACTGACCAATGGATTCC GGTTTATTCATGGTTAGAAACTTTAGATAAGGATGAAGTGGTTAAGTCCAAGGAGATTTCTGAATGGTTAACACAGAACC CTAATATCCAAGAACAGTTATGCTTGAGGCATTCTCGATATCATTTGATGCACTACGTCAAAAAATGCCATTTGAAGATA TTAAAAAGAAGGGGAAAGAAGAAGGGTCTAGAACAGCCTGACAAAGACACATCATTGAAGGTTCAGAAAGATGTGGTGAT GAAACACTCAGCCCCACTTTCATGTGATGCTCTTTTCTCTGTAAATTATGCAGGCAGTTCTATGAACAATCTGCCCAAAG ATAGCGATTTGTTCGTGGCCAAAAGAAAAGAAGCCTATCGCAAATATGAGATTTTAGTGGAGTTGGAGAAGCTGCTCTCC CCAGTATTCTCGAAGCCTCCTAGCATAACTCAATGA
Protein sequence (LotjaGi1g1v0339100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNSEETNANASTAQDQEQEEEEWETMARAWLSSFPEAKEVSMPEVEAWIDSNLSSIPEGLRSMPRPDLCLRLISIQNCM RLPNQEREVNQLDLPHARFQRTDQWIPVYSWLETLDKDEVVKSKEISEWLTQNPNIQEQLCLRHSRYHLMHYVKKCHLKI LKRRGKKKGLEQPDKDTSLKVQKDVVMKHSAPLSCDALFSVNYAGSSMNNLPKDSDLFVAKRKEAYRKYEILVELEKLLS PVFSKPPSITQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 14 | 245 | 232 | 1.4E-19 | – | |
| PANTHER | 14 | 245 | 232 | 1.4E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0339100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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