Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0346600 |
| Transcript ID | LotjaGi1g1v0346600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0346600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81374562..81382107) extracted from Lotus japonicus Gifu genome v1.2.
GGTTAAATCGGATGTCGAGATTGGTTTTTACTCATGGACCCATTGTCCAATTGACATCCCCGATCAACGTAGTGGCAAAG CTTCTGATGCCCTTTCTCCTTCCACCTTGACCCTTTCACTTCACAAACCCTGTTTTCTTACCCCATCCATCACCACTCTA GACACGCACGAAGAAAAACCATTGTTCCCAGAGCCAGTTTTGAGCACCATCTAATCCCCGTGCTTCCACAGATTCTGATC GGAATTATGGATGACAGAATTAGCACTTTGACAGATGATCTCCTCTGTCGCATCCTCTCGTTTCTTCCAACGGAACAAGC AGTTGCCACAAGCATTCTTTCAAAGAGGTGGAAGCCTATCTGGATCTCAGTCCCCGTTCTCGACTTCGACAATCAAACCC ATCTGAGAAAAGGTAAACCCTCATATTCCTTTGAAAGGTTAATATACGCAACCATTCAAGCTAGAGATCCGCAACAATCC ATTAAAACTTTTCGTCTCAAATATGAGCTTCTTGACCTTGAACTTTCGGAGGAACGAGCGAATGCTGATATCAATGTTTG GATAAAAACTGCTATAAACCATGGGGTTGAGAACCTTGAAATCTACCTTGATTGCAACTCTGTGCCTTTCGATTATATCG TTAGGTTAACCTGCTGCGGCATTTTCAGCTGCAAAACCCTTGTTGTTCTCAAGTTGAAAGAGGTATCTCTAGCTGCTTCT GGTTCTGTTGAGCTTCCCTCACTCAAATGCCTATGGTTGCTACGTGTTGAATTTGAAGAGCCTCAATATCTTATGGAGCT TCTTTATGGATGTCCAGAGCTTGAAGATTTGAAAACAATTTTTCTAGATTATGCTCATGGTGGATCTTTTTGTAAGGAAC GGTTTAAGATCTTACCCAAATTGGTCAGGGCGGATATACGTTCTTCTGGTATGGAAATTATGGATGGTAACAGTACTAGT ATTCTTATGAAAGCAATATCTAATGTGGAGTTTATGAACATCACAGAGGTTTGATTTGAATATATTCGATAGAAATGTGT TTAGTTTGTTGATTGGTTTTGTTTTTAGATTACTGTCACCTATATTTCTCATAATTTGTCTCTATCACTATTGCAGTTTC GAGTTAATGATTCGGTTCCAGAATTTCCTCATTTAAGGCATTTGACCCTCTCGCTGATTTCTACTGTTAAAAGCTCAAAT TTGATGCTTTTGATGCTCAAGAATTGCCCCAAGGTTCAAAGTTTTGAACTTTTTGGATCTTTTAAAGATGACGATGTTCT ACATTACCCTCATTTTGTTCCTGAATGCCTTACTTCATGCTTAACTAAGTGCTATCTCAAACGTTTCGAAGGCACAGAAA ATGACCTACAATTTGCAAAGTATATTATGCAGAACTCGACATATTTACAGTCCATGAAGATTCTTAGTCTTTCACCTGAT CCACTTGAAGTGTTGAAGGAGTTAGCTATGTACCCGAGGAAATCCGCATCATGTGAACTTTCATTTGATCGATAGGCTTG TAAGTAACTGCAAACTTTTCCTAAATGACAGACAACATGTGCCGTTTGTTAAAAAATGCCAAAAACTGGATTTGAAGGGC TTGGACTTTGTAATTTAGTGTCTCTGTGTACCCATTATCTGGTTATTGTATGATGCTTGACCACTAGATGTGAGGCTTTA AATGGACTGGAAATTACTATTTCATATGCTGATGATGTACTGTTTTCCCTATTGAAAAAAGATGTTTTTTCTTCTTTCTT ATGATAGTATTATGACATAACTCTTGGTCAGTGGCTGGTCATTTTATAAGATACATGCAGAAGCTTCAATTCCATGCCTT AATAAGCTGGTATGATTTAGTGATACTACAAATTGACATCAAAATCCTTTCTAGTTGTTGTAAGAGTCACATTTTGTGTT AATATTTGGCATATTAGCTTGCTGCATGCTTTTATCTAGGAGAGTGCTTTTGACTGTGCTAGATTTGAAATGTTAAGAAT TTTTGTGCGATTAACTTTCTTGATTCGATGAAATGTAGGCCTTTGAGAATTTAGTCATTGTTTTATCTCCCCTAGTTTTA CTTGGTGTGCACCTAATTTGATCTCCAATGCTTAATGCATTGTTCTCGAACACAAACCGTTATTAGAAAACATACCTCAT AAAGATAAAACCCGTTCTTCAATTTAACAGAGGAAACCTTAAGGTTGAGTCCTGCCGTAGCTAGCCTGTGCATACTTCTG AGTATTTTATGTGATTCTTAGGGTATTTCTCTACACTGTTTGATTTTCCGAGTAGCATCAAAGTTTCTAATTATATATCA ATTTTGTGATTTTGTCTTCTCATCTAGAAAAGTAGTCATATTTTAACTTCTTGGCTAAAATGCATTAATCATGGTTGTTG TCTGGGCAAGCTTATCATCTGGAATCATGGTTAAGTTGTTGAAGTGATGGTGAAATATGTTATTAATATACACTATCATT CTTAAATCACTATGAACCTGCTTAAAATTTGGTGATTTTTACTGCTGATGAGCTAGTTTCGTGTTACTAAAATATTTCAG CTGAAACTTTTGTCTTTGGATTATTCTTGACAATGAAAAGATAATTTGTTTCATTGAAGTTTCAACTACTGTTTGTGCTT AGGATATCTATATAATACTTGATTCATATGAATCATATTATTAAAGTCAACTCTTCTTCCTAGACTCGAGACTTCCTTGT TCCCCATGGCTCTGGTTTTTATTGCCATTTTCTTTCTATTAAACATCACAAATTCTTCCAATGGCTACACGCCTTGTGAG CCATTCATTTGTGGTAACGTTTCGAAAGAAAATCTAACCTATCCATATTGGAATGGGAAACAGTCGGCCGAATGCGGTCA CCTAGCCTACAAACTTAACTGTGATGAAGATCCAGTGACCCTTGATATGAATTCTGAAAAGTTCGTCGTCCTAGAAATAA ATCAGGAGACGGGAATTTTAAAGATTGTGCCAATACATATATTTGAATTCAATGGAACTTGTCCCAAGGAGTATAAGAAT ACCAGCTTGGATTCAAAATTCTTCAACTACACCTTGAGGGATGGACAATTTAATCTATTTTACGATTGTGGTAATCGTTC TCTCATGTCCCCTCTAAATCACATACCATATACAAATTATAGATGTGACGCAGATGACGGTCTACGTTATGAATATTTGG TATCTACTAATAATTTTGTCTATTTTACAAAACTTGGATGTAAAACTATATTTTTTTTACCTCCAAATTTTGTAAAATAA ACAAAATTATTAGTAGATACCAAATATCCATAACGTAGTCGTAGACCGTCATCTGCGTCACATCTATAATTTGTATATGG TATGTGATTTAGAGGGGACATGAGAGGACGATTACCACAATCGTAAAATAGATTAAACTGTCCATCCTCAAGGTGTAGTT GAAGAATTTTGAATCCAAGCTGGCATTCTTATACTCCTTGGGACAAGTTCCATTGAATTCAAATATATGTATTGACACAA TCTTTAAAATTCCCGTCTCCTGATTTATTTCTAGGTCGATGAACTTTTCAGAATTCATATCAAGGGTCACTGGATCTTCA TCACAGTTAAGTTTGTAGGCTGGGTGACCGCATTCGGCCGACTGTTTCCCATTCCAATATGGATAAGTTAGATTTTCTTT CGAAACGTTACCACAAATGAATGGCTCACAAGGCGGGTAGCCATTGGAAGAATTTGTGATGTTTAATAGAAAGAAAAATG ACAATAAAAACCAGAGCCATGGGGAACAAGGAAGTCTTAGGAAGAAGAGTTAACTTTAATAATATGAATCAAGTATCATA TAGATATTTTTTTTTCTATGGATACTAAGCTTTGAAACAAAATATTTTGAGCTGATATCAATTGAAGATAACCCCGCTGA GTTGAAGATCACCAAGGAGAAGACCTAAGGCCCTTACAAACTATCCTCTGAACCCTTGTTCCTAGAGTGTTTGTATAAAC AGATATTAGAACAAAAAAACCATAATTATTCAAGCCTGATTAATCTATTACACTATTTGTCTGCTGCAGACAAAGGATAA CATTTTGATATATATGTTGCTATGCACCATTGAAGTCTTCTTTTCATCAACAAAACCACTAAGCATATGGTTATTGTAGG CTTTGGTATTTGGCTATGCACCATTGAAGTCTTCTTTCTTCATCTATTACATTAGCGTCTGCTGTTCTCTTTTTCCTCCT GTGTTCTTTTCTATCGTTGTGGAGTTCTAGTTCTAGCTTCAATATTTTCAGGCTCCTTACTGACAGATTCGTCTGATTTA CCAGCATTTCTGTCCCAAAGTGGCACGCCAGTATTCGATGATCCTGCCCTTCGCGCGGCACTTGGTCTTTTCACGGGTGA ATCTGGATCCACAAAATTAGCCTCTGCCCTGGGGGCACATGCTGCATTTTCGGGTCTTGACGGGGGCTTTCTCTGTGGTC TACAACTATTCGCAGCGATATTTGTTTCGTAAATTTTAGTAATATTTTGTTTCTTGGGGATGCGGACATTGGAAATCTCT GGCTGCGAAGAAGGTGGCGGGTCTGAAACAAGAATTATAGTGGATTTCCGCAATTTCTTTCTCTGTTCAAGGTTTGGTTT GATCTGTGTATTTCCTATGTCAGAGAGAGGTTTTCTTGGAGCTTGGTCACTGTTTGTCTCAGCAGGCCTATCAGACAGTG CTCCCTGAAGTAACTCTGCACCTTGAGTAGCAAGAAGTCGGTCTTTATCTGCTTCTTCAATGCCTGGATTATTTCCTGTC CTCTGAACCAATCCCGATTGCATTGACTCTTGTGACTCATTTGACAATGATGCTCGGTTAGCACACTTGGTTGCTAGGCA GCCACAAGAACTCCCACAACTGTTGCCCCTGGATTTGCACTTGCATTTTGTTGTCTTGCACGATGAGATTTTACTACAAG AGCAGCAGATATCTGATGCAGTTTCTCCATATGCAGATGCAAATCCATCTCCTAAATTGTCTTTGAGATCCTTGGGGTTG TTGGTTTTTGACTGATTATGTTCCATGCTTGGCCGTCTGGTTAAAGATTTCCTTTTCCTTACTAATTTCCCTGATTCTTT CCACTCATCATCCGTTGCCTCCAAATCATAATCATCCGATTCTGTCTCAGATATGTCCATGTCCTCCAGTAGAAGGGTAG ACGGACGGTGTTCCTAAAGGTAAAATAAGTTTTAGAAATTAAATGAGAACCAAATAATCATTAACTGCAGTGCTAAATGC GCTATTAACTAGTATGAAATAGAATCCTTGGCATAGACGCGTAGTTGTAAGAGAGGGATTATGATCCTCTTATGTGACGT GAGAGCGTCATGTAAAATTCAAGTACATCTCTCATGAAAACGGTGCTAAACACCCCATATAAATATAAATAGTCATAATG AAACGCTCATAGGGTTTGTGGCATGGGTAGCAAACTTTTTTGTGCCCTTCCTTCTTGACGCTCTCTGTTCGCATACCCTG TTTTTTTCCCCATCCGTCACCACTTAAAACAACGTATTATCGGCTTATCGCCTTGCTACTTCTACTGAACGTGATCGGAA GTTCAGTTCGGCAAACATGGATGACATAATTAGCAGTTTGCCAGATGATCTTCTCTGCCACATTCTCTCGTTTCTTCCAA CTTAACAAGCAGTTGTCACAAGCATTCCTTAACACTGTGTTTGGTAGGAGTGAGTTAGGGTAGAGAGAGATGGGAAGGAG AGAGTTTGAGTAGAGATTATTAAAGTAACCTTGTTTGGTTTGACAAGATAGGGGGAGAGAGGGGGCAAAATGGTGGGTCA TACCCACTTTTTCATCTCTTCGCAATTTGCGAAGAGATTGGGGCTGGGTTGCTTTTTTTTTTTTTTTGTGTTTGGCAATT AGCCACTATTTGCATCTGAGCCACTTTTTTATTTAAAATTCTTATTTTAATCAAAAGTCAACTTTTTCTCTCTCTTCCAC ATCATTATTTCTTATCTCCCTCTTCTTTATCTCTACCCTACCAAACAACCAAATAAATCTACTCTATTTCTCACCTATTT CTCTCTACTCAACTTCTCTATTCTCTACTCTCTCTTCTCTATCTCTCTCTATCCTGCCAAACAAAGCTTAAAAGATGTGG AAGCCTCTCTAGATCTCAGTCCCCATTCTCGACTTCAATAATTGGAACTATCCGAGATACGACGTTGAAGGGTTCAAACA CGCAACCATTCTAGCCAGAGATCCGCAACAACCCATTACAAGTTTCCGACTCAAAATGCACTATTTTACTATGGACATGA GAGTGCCGATGTCAATGATTGGCTAAATATTGTTATACAACGCAGGGTTGAGAACCTTGAATTGTTGTTTGATTTCATAG AAGTATCTGATGTAGAAGCTCATGTCATTAATTTGAGCTACAGAATTTCCAGCTGCAAAACCCTTGTTGTTCTCAACTTA CAAGCGGTTTCTCTACGTGCTTGTACTGCTGTTAAGTTTCCCTCACTCAAGTCCCTAAGTTTGAGAAAGGTCAAGTTTGA AGAACCTCAATATTTTATGGAGCTTCTTTATGGATGTCAGGATGTCCAATGCTTGAATATTTGAGAACATTTTTTCTAGA TTATGCTCATGGTGGCTCTTTTTGCAAGGAACGGTTTAAAATCTTACACAAATTGGTCAGGGTGGATATACGTTCTTCTG GTATGGAAATTATGGATGGTAACAGTACTAGTATTCTTATGAAAGCAATATCGAATGTGGAGTTTATGAACATCACAGAG GTTCGAATATATTCGATGGAAATGTGTTTAGTTTGTTGATTGGTTTTGTTTTTAGATTACTGTCACCTATATTTCTCAAA ATTTGTCTCTATCACTATTGCAGTTTCGCGTTAATGATTCAGTTCCAGAATTTCCTCATTTAAGGCATTTGACCCTCTCG CTGATTTCTACAGTTAAAAGCTCAAATTTGATGCTTTTGATGCTCAATAAATTGCCCCAAGCTTCAAAGTTTTGAACTTT TGGGATCTTTTAAAGATGAGGATGTTCTACATTACCCTCATTTTGTTCCTGAATGCCTTACTTCATGCTTAACTAAGTGC TATCTCAAACGTTTCGAAGGCATAGAAAATGACCTACAATTTGCAAAGTATGTTATGCAGAACTCGACATATTTACAGTC CATGAAGATTCTTAGTCTTTCACCTGATCCACTTGAAGTATTGAAGGAGTTAGCTTTGTACCTGAGGAAATCCGCATCAT GTGAACTTTCATTTGATAGATGGGCTTGTAAGTAACTACAAACTTTCATGTGTCGTTTGTTAAAAAATGCCAAATACTGG ATTTGAAGGGCTTGGACTTTGTAATTTAGTGTCTCTGTGTACCCATTATCTGGTTATTGTATGATGCTTGGCCACCAGAT GTGAGGCTTTAAATGGATTGGAAATTACTATTTCATATGCTGATGATGTACTGTTTTCCCTATTGAAAAAAGATGTTTTT TCTTCTTTCTTATGATAGTATTATGA
CDS sequence (LotjaGi1g1v0346600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACAGAATTAGCACTTTGACAGATGATCTCCTCTGTCGCATCCTCTCGTTTCTTCCAACGGAACAAGCAGTTGC CACAAGCATTCTTTCAAAGAGGTGGAAGCCTATCTGGATCTCAGTCCCCGTTCTCGACTTCGACAATCAAACCCATCTGA GAAAAGGTAAACCCTCATATTCCTTTGAAAGGTTAATATACGCAACCATTCAAGCTAGAGATCCGCAACAATCCATTAAA ACTTTTCGTCTCAAATATGAGCTTCTTGACCTTGAACTTTCGGAGGAACGAGCGAATGCTGATATCAATGTTTGGATAAA AACTGCTATAAACCATGGGGTTGAGAACCTTGAAATCTACCTTGATTGCAACTCTGTGCCTTTCGATTATATCGTTAGGT TAACCTGCTGCGGCATTTTCAGCTGCAAAACCCTTGTTGTTCTCAAGTTGAAAGAGGTATCTCTAGCTGCTTCTGGTTCT GTTGAGCTTCCCTCACTCAAATGCCTATGGTTGCTACGTGTTGAATTTGAAGAGCCTCAATATCTTATGGAGCTTCTTTA TGGATGTCCAGAGCTTGAAGATTTGAAAACAATTTTTCTAGATTATGCTCATGGTGGATCTTTTTGTAAGGAACGGTTTA AGATCTTACCCAAATTGGTCAGGGCGGATATACGTTCTTCTGGTATGGAAATTATGGATGGTAACAGTACTAGTATTCTT ATGAAAGCAATATCTAATGTGGAGTTTATGAACATCACAGAGTTTCGAGTTAATGATTCGGTTCCAGAATTTCCTCATTT AAGGCATTTGACCCTCTCGCTGATTTCTACTGTTAAAAGCTCAAATTTGATGCTTTTGATGCTCAAGAATTGCCCCAAGG TTCAAAGTTTTGAACTTTTTGGATCTTTTAAAGATGACGATGTTCTACATTACCCTCATTTTGTTCCTGAATGCCTTACT TCATGCTTAACTAAGTGCTATCTCAAACGTTTCGAAGGCACAGAAAATGACCTACAATTTGCAAAGTATATTATGCAGAA CTCGACATATTTACAGTCCATGAAGATTCTTAGTCTTTCACCTGATCCACTTGAAGTGTTGAAGGAGTTAGCTATGTACC CGAGGAAATCCGCATCATGTGAACTTTCATTTGATCGATAG
Protein sequence (LotjaGi1g1v0346600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDRISTLTDDLLCRILSFLPTEQAVATSILSKRWKPIWISVPVLDFDNQTHLRKGKPSYSFERLIYATIQARDPQQSIK TFRLKYELLDLELSEERANADINVWIKTAINHGVENLEIYLDCNSVPFDYIVRLTCCGIFSCKTLVVLKLKEVSLAASGS VELPSLKCLWLLRVEFEEPQYLMELLYGCPELEDLKTIFLDYAHGGSFCKERFKILPKLVRADIRSSGMEIMDGNSTSIL MKAISNVEFMNITEFRVNDSVPEFPHLRHLTLSLISTVKSSNLMLLMLKNCPKVQSFELFGSFKDDDVLHYPHFVPECLT SCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILSLSPDPLEVLKELAMYPRKSASCELSFDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 382 | 381 | 2.2E-68 | – | |
| PANTHER | 2 | 382 | 381 | 2.2E-68 | – | |
| Gene3D | 2 | 323 | 322 | 3.7E-22 | ||
| SUPERFAMILY | 3 | 46 | 44 | 1.03E-9 | ||
| SUPERFAMILY | 135 | 308 | 174 | 8.11E-10 | – | |
| Pfam | 312 | 356 | 45 | 2.3E-12 | ||
| SMART | 317 | 385 | 69 | 3.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0346600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…