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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0348700 |
| Transcript ID | LotjaGi1g1v0348700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT2G22490.1 Cyclin D2;1; Swiss-Prot: sp|P42752|CCD21_ARATH Cyclin-D2-1; TrEMBL-Plants: tr|I1K9N9|I1K9N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0348700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81774522..81778612) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTTCTTAATTATTCTTCCCATTTTGATAAATGAAGATTGAAGAGGTGTGTCTATTCCTCTCTCTCTCACACCGTTT AAGATCACAAAATGGTTGTAATTAATCACCTTTCCTTTCATTGTTTTCTATGAATCGATACATACATTGATACATATATA CAAATACATCCATCCACACTACACACACACAGACCACTCTGTCTGTCCCCAACCCCACTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTTTACCCTAAAAAGAGGCCTTCGTTTGCCTTCATAACCCCCTCTCA TCCCTCTCCTTCTGCAGTCTTTTCACCCACAAACCTCTCAGACTCAAAGAGGAAGAGAAAACAAACAACCCCTTGTCTTT AAACTGGTTTTCTTCTTATTATTTTCACCAGATTATCATTTCTTCCTAAAGAAAAAAACTCCCCACCCCACTTACTGATT CATAAAAAAGATTAAATTTTTGTGTTTATTTTCTGAATTTGGATTCAGAGGCTCTGTTGGGTATTTTTGAGTTGAGTTGT TTCAATGGCACCCAGTTTTGACTGCGTTTCTAGCCTCCTCTGTGCCGATGAGGACAGCACTGTTTTCGATGACGGCGATT ATGCCGGTTCGGCGGCGGCGTCGGAGGTGCCGGAGGTGTACGATGAAACATGGCGGCGGTCTAGATACCATCATCAGAGG AGCCAGGGGTTTGGTGACCCTGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGGTGATGGTGGAGAAGGAATGCCA GTTCTGGCCTGGTGCTGATTACTTGAACAAGTTTCGGACTCGTGATTTGGACTTTGGGGCTCGAAAGGAAGCCATTGATT GGATTCAAAAGGTGTGTGTTCTATCATCTATCTGCTGTTTTAGTCAAGAGTAGACCCTGATTGGTTTTGCTTACTTTTTC TTAATCAGTATACTAAAACTCTAATCTTTGAAGTGAATAATGAAATGGGGTGTTTCTGAAATCATCAATCGCGTTTGCCT TTGATGGTCTGTAATGAAATCTGAACTTTTGATTTCTGTCTGCTAAAAAAAGACAGTGTTTTGTTTGGATTTCAACTTGT TTTACTCATCATAACTGCATTCAGTGTTTGATGATGGTTCCATTGATGTAAATTCCTGGATTGTCCTTGTATAGTCTGAA TCTTATGGTCATGATGTTGTTTTTCAGGTTCGGATGCATTTCGGTTTTGGTCCTCTCTGTGCATATCTATCCATAAATTT CTTTGACCGGTTCCTTGCTGTATATGAATTTCCCGTAAGTCAATGCTTTTTTCCCTTATTTTGTTCTTATGTTCTTTGGT TTTGTTATCTTGTTCAATGCATATCAATCCAAAAGCTTTGTCATTGTGTTGACTGGTTTTGATCTGGATTTTCCACTTGC AGAAGGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTGTCTCTGGCAGCCAAAATAGAAGAGACTGATGTT CCTCTGCCTCTTGATTTGCAGGTAAGAAATTTTCTTTCAAATGATTGATGTTTGTTTAGTCAATGTTTTAGTGTTGCATG TGTTGATCGTTGTTTTTCCTGCAGGTTGCTGAATCCAAGTTTTTGTTTGAGGCTAAAACAATTCAAAGAATGGAGCTTCT GGTCCTGAGCACATTGAAGTGGAAAATGCAGGCTATTACTCCATTCTCTTTTATTGATTACTACCTTCGCAGGGTCGATG ATGATGGAAGTTCATTAAGTTCTTTAATTTCGCGATCCACCCAACTTATATTGAGCACTATAAGAGGTACCTATCTGTTT TCATCGCTAAGTGTTTTTTCATCGCTAAGTGTTTGTTTGGTTTGACTCTGATCTCATTGCCGATACGACAATCTTGATTC TCCATTGATGTATTGGGATGTGTGTTTTCCGATTGCATTGATGCCTAACGCCAAACCAAATAAGCACTAAATTTATTGCA GAAATGGATTGTTTTGCTGCTATAGCCAATATCTGCATTAATAGAATTGTGAATTGGAGGAACTATAGATGGTAATTTAG ATGGTGTGAATTCAATGCAGGGCTTGACTTCTTGGCATTCAAACCTTCAGAGATTGCAGCAGCTGTGGCAATGTATGTCG TGGGGGAAACCCAATCAGTTGACACTGACAAAACAATTTCCATCCTGATTCAACATGTAGAAAAGGTAAATAGGGTGGTC CAATGACAATGATTTCACTTTTCAACCTTGTTATTGTAAGTTGATTAAGTTCATGTCTGGAAACTCATTCGAGAACCATG ATGAAACCAAAATTACGGTAGTCAGAAACAAATTCTGCCCACCATGATCTTTGCTTCTCTGTGGTTTTCAATCTAATTTC CAAACATGCACTAATTGTGAGTTTGATGGATTGCAATTAATTGATGATGGTTGTTGAATTGGTATTTATGTTGTGTTGTT TGGGTTTGGCAGGAGAGGTTAATGAAGTGTGTTGAAATGATTCATGAGCTGTCATCCAACAAGGATTCAAGTGCTTCTGC ACCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGAGGCTGGGTGCTTCAGCTACAAAAGTGATGTTGACACAAATGCTG GTTCTTCATGTTCTTCAGATAATAGCCCAAGTGCTAAAAGGAGGAAACTACACTAAACATGTGGAGAAGAGCTATAGCTA TGTGGGTTGGGAATTTTATCTTCATCCATAGGATGCTTTTCCAGAAAAGGACATTATGTGTGTTTTATGGAAGGTGCCCC TCAAAACAATACCTAAAAGAGACAAAAAAAAAGAGATATAGCTAGAATTAGTTAAACAAAAAAAAAGGATCTTAAAAGGA TGCCAAAACTATGAGGTTGGTCATGAGTGGATGATGATGATGGGTGATGAAATGAATTGTCCACACACATTCCATGCACT TGGTATGAAGTGTGTGATCACCAGCTGTTAAACATTTTAGTTCTCTTAACAGCAAGAGAAATTGGAGGAGGAGGAAAATA AGTCTTTCTGCATGTTTGGAAGCCCTTTTGCAATCGGTTATGAAGACAGAATCAATTTTGAAGAGAAGTTTCTGTTTTGG ATTTCAGAATTGATTCTGATGACATAGAAGCGGATTCAAATATGCTATTTATGTAAGTATAGTCGATGTTTTTGATTCGT TAATTGTTCTTAATTAAAAATGAGAGAAAAATAGACATAAAAAAGAGTGAGACAGAGCTACTAGCACTATGGTATAGTTG CGGGAAAATTTTCATTGATATTATCTTTATTCCATTAGTTGTTTAATGTTTATTCTGATAAAGTTATATACAAAAAATGG GGTGGTTGTTCTGCCATGAAAGCTTTATTAGCAATTCAACATGAGACTTTGACTGTTAGACCATTGCTTTATCATTGGTA AGATCATTGCTTAACCCCTTTTCCGTATGCACTAACCGTTAGACCGGAAACAAATGTGCAAATAGAACTTCCATCCAAGT CTGAATCAGAATTGATTGAATATTGGTAGTTACGAATTGATTGTAATTGATTTTTTTCTTCTAAATTAGAAAAATCCTTA AATACTTCAGAGATCAACCTAACTTGGGATGATGATGCATGTGAGAAAATGAGTGTATCATCAGCAAAGAAACAAATGTG ACAAACCTTGACTGTAATAAGGGACAAATTTTAAATACATAGGATGACTTCCATTCCAGAGCACACTTGAGAACATAATT GCACCAAGGTGCGTTGTAAATGGGTCTAATTAGTATTATCATATAGCTAAGGCACATTTCTTCAACTTCGTTCTACTTAA GAAATGCACAACCTCCTCAGCTATTTGAATGTTGTCCACTGGATCACTTCTTGGAACAAAGCTACCCTAAAGAGGTCCAA TCAACTCGGTGAGACAAGGTTCTATCAAGAGGAATTGGTTGACCATATGACATAGCAGTTAGCACTATAGCCTCTAACTT TGTTTTTTTTTGTCAATGCCTTAACTTTGTTTTGGCGTACTAAGGAGTTGCAGACTATTTTAGTTGTTGCTCAAGTGTAA AGAACTGTCTT
CDS sequence (LotjaGi1g1v0348700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCCAGTTTTGACTGCGTTTCTAGCCTCCTCTGTGCCGATGAGGACAGCACTGTTTTCGATGACGGCGATTATGC CGGTTCGGCGGCGGCGTCGGAGGTGCCGGAGGTGTACGATGAAACATGGCGGCGGTCTAGATACCATCATCAGAGGAGCC AGGGGTTTGGTGACCCTGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGGTGATGGTGGAGAAGGAATGCCAGTTC TGGCCTGGTGCTGATTACTTGAACAAGTTTCGGACTCGTGATTTGGACTTTGGGGCTCGAAAGGAAGCCATTGATTGGAT TCAAAAGGTTCGGATGCATTTCGGTTTTGGTCCTCTCTGTGCATATCTATCCATAAATTTCTTTGACCGGTTCCTTGCTG TATATGAATTTCCCAAGGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTGTCTCTGGCAGCCAAAATAGAA GAGACTGATGTTCCTCTGCCTCTTGATTTGCAGGTTGCTGAATCCAAGTTTTTGTTTGAGGCTAAAACAATTCAAAGAAT GGAGCTTCTGGTCCTGAGCACATTGAAGTGGAAAATGCAGGCTATTACTCCATTCTCTTTTATTGATTACTACCTTCGCA GGGTCGATGATGATGGAAGTTCATTAAGTTCTTTAATTTCGCGATCCACCCAACTTATATTGAGCACTATAAGAGGGCTT GACTTCTTGGCATTCAAACCTTCAGAGATTGCAGCAGCTGTGGCAATGTATGTCGTGGGGGAAACCCAATCAGTTGACAC TGACAAAACAATTTCCATCCTGATTCAACATGTAGAAAAGGAGAGGTTAATGAAGTGTGTTGAAATGATTCATGAGCTGT CATCCAACAAGGATTCAAGTGCTTCTGCACCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGAGGCTGGGTGCTTCAGC TACAAAAGTGATGTTGACACAAATGCTGGTTCTTCATGTTCTTCAGATAATAGCCCAAGTGCTAAAAGGAGGAAACTACA CTAA
Protein sequence (LotjaGi1g1v0348700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSFDCVSSLLCADEDSTVFDDGDYAGSAAASEVPEVYDETWRRSRYHHQRSQGFGDPDELPLLSDECLAVMVEKECQF WPGADYLNKFRTRDLDFGARKEAIDWIQKVRMHFGFGPLCAYLSINFFDRFLAVYEFPKGRAWTMQLLAVACLSLAAKIE ETDVPLPLDLQVAESKFLFEAKTIQRMELLVLSTLKWKMQAITPFSFIDYYLRRVDDDGSSLSSLISRSTQLILSTIRGL DFLAFKPSEIAAAVAMYVVGETQSVDTDKTISILIQHVEKERLMKCVEMIHELSSNKDSSASAPCVPQSPIGVLEAGCFS YKSDVDTNAGSSCSSDNSPSAKRRKLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 316 | 310 | 1.7E-120 | ||
| PANTHER | 7 | 316 | 310 | 1.7E-120 | – | |
| SUPERFAMILY | 57 | 199 | 143 | 5.21E-37 | ||
| Gene3D | 69 | 290 | 222 | 3.3E-49 | – | |
| Pfam | 70 | 199 | 130 | 1.1E-28 | ||
| Gene3D | 83 | 200 | 118 | 3.3E-49 | – | |
| ProSitePatterns | 100 | 131 | 32 | - | ||
| CDD | 100 | 192 | 93 | 4.11819E-18 | ||
| SMART | 105 | 193 | 89 | 3.4E-19 | ||
| SUPERFAMILY | 184 | 294 | 111 | 1.32E-7 | ||
| SMART | 202 | 322 | 121 | 4.0E-11 | ||
| Pfam | 202 | 300 | 99 | 1.0E-14 | ||
| MobiDBLite | 327 | 347 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0348700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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