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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0352900 |
| Transcript ID | LotjaGi1g1v0352900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G47490.1 RNA-binding protein 47C; Swiss-Prot: sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C; TrEMBL-Plants: tr|A0A0B2QRK5|A0A0B2QRK5_GLYSO Polyadenylate-binding protein RBP47C; Found in the gene: LotjaGi1g1v0352900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82457451..82461748) extracted from Lotus japonicus Gifu genome v1.2.
TTAGAGTTAGAGCAGAGAAGAACCAAAACATAACAACAATGTCATAACACATCCAACGGTCTACATCAAAGCCCATGACG TGATCCAACGGTCACCACCGCAACCGCTTCCACGAAGCCAAACCCGATAACAATAACACAACATCATCATCCTCTTATAC CTCTCTTTCACTCTCTCTCAAAATCCAGATTCAAAACCTCTCTCTTTTTCTCTCACAACTTCAATTATTCTCCATTTTCA TTTTCCATAACAGAGAAACAGAGGCACTATAATCATAATAACAAGAAGAAGATGCAATCATCCAACGGTTCTGATTCCCA ACAAACGGAGCAGCAGCGGCAACCGCCTCAGCCAGTGGCACTGGCGCCGCCACCGCAGCAGCAGCAGTGGGTGCCGATGC AATACCCTGCCGCCGCGATGGTAATGCCGCACCACATGTTGCCGCCACAGCATTACGCGCCGCCGCCGCAGGCCTACATG CCTTACCATCAATACCAGCAGCAGGTGCCGATGCACGTGCCGTCTCACTCGCACCAGGGATCCAGCGCCGCCGATAACAA GACGATCTGGGTCGGTGATTTGCATCACTGGATGGATGAGAATTATCTCCACCGCTGTTTTGCTTCCATCGGCGAGGTTT TCACATGTTCCATCACTATACTTATTGCATCTGTTGTCATAACACTTTACAGTTTACATGCATATTACGTATAATGTGAT TTTTGTTTTATCTTGATTGCTTTTAGTGTAACTGTAACTGAAAAAGAGTTCTTTTAAACCTCAACAATGTAGGAACAAAG ATGGTTTTTTGTTCTGTTTTTTTGTTTCCTTTGATAATTAATTGTGTAATTAAAGACAAATTATTTGTGAATCAATTGAT GTTTAATTTGTTGGGAATTAAAGATTGGAGAATGAAGAGGGTATTTTTCAATTTTGGATGTCAACTTTGACATTTTGTTA TCAATGTTCTGTAATTTCTTTCAAATTTTGTTAGGTGAAGTTCCCAATGAAGCAGACAATTAATGTTGTGTCTGGTTTTC AGTTTGGAAGTCTATTTGGGGCATTGGAATTCAAAATCACTCATTCCGATGCCCCAAATGTGAAAGAGGCTTTGGACCTC CGTTGGATGAAAGCACTTTCAAATGGAAAACCAAACAGACACTAAATTCTCAAGCCCCCACATAAAATAGTTTTATGTTA CATGAACTTGTGTTCAAAATAATATGTTGTATTAGACAAGTATTGGGTAGTGGTGTTTGTGTGCAGTTTGCACAAGTTTG AACTATTTTGTGTGGTAAGATTTTGCTTGTGTCATTTGAAGTTTGAATAGTTTAGGATGAAGAGACTGGAGGATTATGCC CTTGTTAACAAGCTAGTTTTAACCACTGAAAAAATGTGACTTTGGTGCTAATTCTTTATCATTCTAGTTTGATGGAAAAT ATAATCTGAATTTTGAAAGATTAGTTTGGCAATGGTATGATAGAAAATGGTACTTGAGGTTTTCTTATTGTTTAAGATGG ATCAACTATGGTATCTTACCATCACGCATTTTTTGCAGATTAACTCTATTAAGGTTATTCGCAATAAGTCTACTGGTCTG TCAGAGGGTTATGGATTTGTGGAATTCTATTCACATAGCACAGCTGAGAAAGTCTTACAAACTTATGCTGGGATGTTGAT GCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATC TCTCTATTTTTGTAGGAGATTTAGCTGGAGATGTTACAGATACCATGTTGCATGAAACTTTTGCTAATAAATACCCTTCT GTTAAGGCTGCAAAAGTTGTTTTTGATGCCAATACTGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAA TGAGAGGTCTCAGGCCATGAATGAAATGAATGGTGTTTACTGTTCGAGTAGGCCTATGCGAATTGGGGCTGCAACTCCTA GGAAATCATCTGGCTATCAACAAGGTGAGGTGAATCACATGCTGGCTTCTGATATCTGAAATTTTACTCTTCAAGAAGAA GACATGAAACATCGAATTCAATGAAATATTTCATGTTGTTACTAATTAACTTTTGGAAACTGCAGTTTTGTTGCTAATAT AAACAGGTTGCATAATTTTGTGGCTTCTTGCATATTCTTCAGTTCGTCATTGCCACCACGTCTTTTTAGATAGATAAATT GCTTGCAAAATGCAATGACAATTATTATGTCTTTCAATTTTACTAATTGGGCTATAGCATGATGTTATTTGCTCCTGAGT AGGCAAGTATCTATTTCATAGAACTCCCTGAATCCATCTATTCATTCTATTTTACCTTTTGCGGTTTTCAACACCTCAAG GTTGCTTTTTGTAATGTCTCTCAAGTTTAACCTTTACATTTGTTTTTCCACTGCATCCTGCTGGGAAAATCTGAAGTATC TCTACAAGTTTGGTATTGATTTAGTCTATTTTCTTGTATAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTG AATCTAATAACACAACTGTAAGCTTTTCATCTTTTTAGCACGTTGTATTCTTTTTGTTGAAAAAAAAATTGAATTGTCAC TATTCTTCTATGGATTATTGATTATAGATATTTGTTGGTGGACTTGACCCTAATGTTAATGCTGAAGATCTTAGGCAGCC ATTCTCACAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGGT AAGTTCAGTCCCTCTCAAATCTTTGCATATACAGAGATAACGTTGTTATTAATCTCAATGTGTATACTAATCATTCTGAT CCACCTTACCAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGCACAACGATTGGAAAGCAAACAGTTCGTCTTT CTTGGGGCCGCAATCCGGCAAATAAGCCGGTAATCTCTCTTCCTTTCACATATAGAGAAACATGCATTCTTGTTGCCATG TTATCAGGTCTATGAATCTACAGGAACAAGTGTCTTTTAATGACCAATAACATAGAAAGCACAGATGCCATATATGACAC AGATATACATACTATAAAAAAACAGAAAGAGTGCATTGCATTATTAGATACAAATACAGAAAGATGGCAATTTTTGTGCT ACAATGCGTGAAATTAATACAAAGAGCAAAAATCTTAAATCAATAGAGAGAATCGATATTCTAGAAGTTAGAACTGGTTA TCATAAGCATAACATAACTCTGTTTATTTACTTATTGGGAAATTCTCATTTGTATTGGTATAAATGATCAAATTGGCAAC TATATTTCAGAAGTGTGCTTTCTTGCAATAACTCACACCTAATATGAAGAAAATGGTTCTGTTTAGTTCCGGGCTGCTAA AATCAATGAACTGAAGTTTGGTTTAATGTTCTGATATTTTGGTTTAATTTGGATTTATCAATTTTTATTGTAACGCATAT AATCACTCATTTTTTAATTGTGACGTTAAAATGAAGTGACTGTTATAGTTAAAAAGCCAAATTCATTTAATATATTCATA TTCTTTTAAGACAAATTTTCTAGTAACTGCTAGAGCTTCTAATTGTCTTCATGCTGTCTGTCATTCATTATTGCAATGAT TCTATCTAAATTGGTATTATATCTTTGGTCAGCAGTTTAGAGGGGATTTCGGCAGTCCTTGGAATGGGGCGTATTATGGG GGACCTGTTTATGATGGTTATGGATATGCTTTTCCGCCATCGCCTCATGATCCCAGCACATTTGCTGCTGCTTATGGGGC TTACCCTGTTTATGGAGGTCACCAACAGCAAGTAAGCTGAATGAAGTGCAGTGCAGTGGAGTAGTACTTCCAACAGCATC AAGTTTGTATGAGCAAATTAACTTCTCTCCCTTGTAACTTGCTTGATCTGTTGAATTCTGAAGAATCCCTCCTAATTGTG GAGTGGAGTTGAATTTTGGCAACCTGAGGTAGCATGATAGGAATTCAATTAATCATTCGTTTTAGACTCGTAGGAGTAAT GAAAAATTTGAACTTGTTTTCTGGAATAATTATCTTAAGTATGACTACGTCTATTATTGCATTTTAGTACATGTTTGAAA ATCTTTCTATAATTGATTCTGAAGCCATAATTAATTCTAGAGAAAAGCTTCTGCGAGCAACTTCTGATTTTTAGAATTGA TTATGAGGATGTGAATTGTTTTTGGCACTTCACATCGTAGCTTTATTAGCTTAAGGTT
CDS sequence (LotjaGi1g1v0352900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCATCCAACGGTTCTGATTCCCAACAAACGGAGCAGCAGCGGCAACCGCCTCAGCCAGTGGCACTGGCGCCGCC ACCGCAGCAGCAGCAGTGGGTGCCGATGCAATACCCTGCCGCCGCGATGGTAATGCCGCACCACATGTTGCCGCCACAGC ATTACGCGCCGCCGCCGCAGGCCTACATGCCTTACCATCAATACCAGCAGCAGGTGCCGATGCACGTGCCGTCTCACTCG CACCAGGGATCCAGCGCCGCCGATAACAAGACGATCTGGGTCGGTGATTTGCATCACTGGATGGATGAGAATTATCTCCA CCGCTGTTTTGCTTCCATCGGCGAGATTAACTCTATTAAGGTTATTCGCAATAAGTCTACTGGTCTGTCAGAGGGTTATG GATTTGTGGAATTCTATTCACATAGCACAGCTGAGAAAGTCTTACAAACTTATGCTGGGATGTTGATGCCTAACACGGAG CAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTCTCTATTTTTGT AGGAGATTTAGCTGGAGATGTTACAGATACCATGTTGCATGAAACTTTTGCTAATAAATACCCTTCTGTTAAGGCTGCAA AAGTTGTTTTTGATGCCAATACTGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAG GCCATGAATGAAATGAATGGTGTTTACTGTTCGAGTAGGCCTATGCGAATTGGGGCTGCAACTCCTAGGAAATCATCTGG CTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGAATCTAATAACACAACTATATTTGTTGGTG GACTTGACCCTAATGTTAATGCTGAAGATCTTAGGCAGCCATTCTCACAGTATGGTGAGATAGTCTCTGTTAAGATACCT GTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGCACAAC GATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCCGCAGTTTAGAGGGGATTTCGGCAGTC CTTGGAATGGGGCGTATTATGGGGGACCTGTTTATGATGGTTATGGATATGCTTTTCCGCCATCGCCTCATGATCCCAGC ACATTTGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGTCACCAACAGCAAGTAAGCTGA
Protein sequence (LotjaGi1g1v0352900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSSNGSDSQQTEQQRQPPQPVALAPPPQQQQWVPMQYPAAAMVMPHHMLPPQHYAPPPQAYMPYHQYQQQVPMHVPSHS HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTE QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ AMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPQFRGDFGSPWNGAYYGGPVYDGYGYAFPPSPHDPS TFAAAYGAYPVYGGHQQQVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 10 | 419 | 410 | 2.3E-218 | – | |
| PANTHER | 10 | 419 | 410 | 2.3E-218 | – | |
| SUPERFAMILY | 61 | 157 | 97 | 8.06E-23 | ||
| Gene3D | 89 | 169 | 81 | 5.8E-24 | ||
| ProSiteProfiles | 90 | 170 | 81 | 14.743 | ||
| CDD | 91 | 171 | 81 | 5.66605E-45 | – | |
| SMART | 91 | 166 | 76 | 2.4E-13 | ||
| Pfam | 92 | 159 | 68 | 1.3E-13 | ||
| CDD | 182 | 261 | 80 | 1.1967E-47 | – | |
| SUPERFAMILY | 182 | 361 | 180 | 1.22E-43 | ||
| Gene3D | 182 | 258 | 77 | 1.3E-20 | ||
| ProSiteProfiles | 183 | 262 | 80 | 16.688 | ||
| SMART | 184 | 258 | 75 | 5.0E-18 | ||
| Pfam | 185 | 254 | 70 | 2.1E-14 | ||
| MobiDBLite | 259 | 285 | 27 | - | – | |
| MobiDBLite | 263 | 285 | 23 | - | – | |
| Gene3D | 266 | 374 | 109 | 9.5E-27 | ||
| CDD | 287 | 358 | 72 | 9.5727E-39 | – | |
| ProSiteProfiles | 288 | 360 | 73 | 18.496 | ||
| SMART | 289 | 356 | 68 | 1.5E-21 | ||
| Pfam | 290 | 354 | 65 | 3.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0352900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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