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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0352900 |
| Transcript ID | LotjaGi1g1v0352900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G47490.2 RNA-binding protein 47C; Swiss-Prot: sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C; TrEMBL-Plants: tr|I1JTH6|I1JTH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0352900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82457869..82461454) extracted from Lotus japonicus Gifu genome v1.2.
CAATCATCCAACGGTTCTGATTCCCAACAAACGGAGCAGCAGCGGCAACCGCCTCAGCCAGTGGCACTGGCGCCGCCACC GCAGCAGCAGCAGTGGGTGCCGATGCAATACCCTGCCGCCGCGATGGTAATGCCGCACCACATGTTGCCGCCACAGCATT ACGCGCCGCCGCCGCAGGCCTACATGCCTTACCATCAATACCAGCAGCAGGTGCCGATGCACGTGCCGTCTCACTCGCAC CAGGGATCCAGCGCCGCCGATAACAAGACGATCTGGGTCGGTGATTTGCATCACTGGATGGATGAGAATTATCTCCACCG CTGTTTTGCTTCCATCGGCGAGGTTTTCACATGTTCCATCACTATACTTATTGCATCTGTTGTCATAACACTTTACAGTT TACATGCATATTACGTATAATGTGATTTTTGTTTTATCTTGATTGCTTTTAGTGTAACTGTAACTGAAAAAGAGTTCTTT TAAACCTCAACAATGTAGGAACAAAGATGGTTTTTTGTTCTGTTTTTTTGTTTCCTTTGATAATTAATTGTGTAATTAAA GACAAATTATTTGTGAATCAATTGATGTTTAATTTGTTGGGAATTAAAGATTGGAGAATGAAGAGGGTATTTTTCAATTT TGGATGTCAACTTTGACATTTTGTTATCAATGTTCTGTAATTTCTTTCAAATTTTGTTAGGTGAAGTTCCCAATGAAGCA GACAATTAATGTTGTGTCTGGTTTTCAGTTTGGAAGTCTATTTGGGGCATTGGAATTCAAAATCACTCATTCCGATGCCC CAAATGTGAAAGAGGCTTTGGACCTCCGTTGGATGAAAGCACTTTCAAATGGAAAACCAAACAGACACTAAATTCTCAAG CCCCCACATAAAATAGTTTTATGTTACATGAACTTGTGTTCAAAATAATATGTTGTATTAGACAAGTATTGGGTAGTGGT GTTTGTGTGCAGTTTGCACAAGTTTGAACTATTTTGTGTGGTAAGATTTTGCTTGTGTCATTTGAAGTTTGAATAGTTTA GGATGAAGAGACTGGAGGATTATGCCCTTGTTAACAAGCTAGTTTTAACCACTGAAAAAATGTGACTTTGGTGCTAATTC TTTATCATTCTAGTTTGATGGAAAATATAATCTGAATTTTGAAAGATTAGTTTGGCAATGGTATGATAGAAAATGGTACT TGAGGTTTTCTTATTGTTTAAGATGGATCAACTATGGTATCTTACCATCACGCATTTTTTGCAGATTAACTCTATTAAGG TTATTCGCAATAAGTCTACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTCTATTCACATAGCACAGCTGAGAAAGTC TTACAAACTTATGCTGGGATGTTGATGCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGA CAAGCGTTCAGATAATGTTCCTGATCTCTCTATTTTTGTAGGAGATTTAGCTGGAGATGTTACAGATACCATGTTGCATG AAACTTTTGCTAATAAATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAATACTGGACGTTCAAAGGGTTAT GGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCCATGAATGAAATGAATGGTGTTTACTGTTCGAGTAGGCC TATGCGAATTGGGGCTGCAACTCCTAGGAAATCATCTGGCTATCAACAAGGTGAGGTGAATCACATGCTGGCTTCTGATA TCTGAAATTTTACTCTTCAAGAAGAAGACATGAAACATCGAATTCAATGAAATATTTCATGTTGTTACTAATTAACTTTT GGAAACTGCAGTTTTGTTGCTAATATAAACAGGTTGCATAATTTTGTGGCTTCTTGCATATTCTTCAGTTCGTCATTGCC ACCACGTCTTTTTAGATAGATAAATTGCTTGCAAAATGCAATGACAATTATTATGTCTTTCAATTTTACTAATTGGGCTA TAGCATGATGTTATTTGCTCCTGAGTAGGCAAGTATCTATTTCATAGAACTCCCTGAATCCATCTATTCATTCTATTTTA CCTTTTGCGGTTTTCAACACCTCAAGGTTGCTTTTTGTAATGTCTCTCAAGTTTAACCTTTACATTTGTTTTTCCACTGC ATCCTGCTGGGAAAATCTGAAGTATCTCTACAAGTTTGGTATTGATTTAGTCTATTTTCTTGTATAGGAGGCCAGTCAAA TGGCACATCCAGCCAATCTGAAGCTGAATCTAATAACACAACTGTAAGCTTTTCATCTTTTTAGCACGTTGTATTCTTTT TGTTGAAAAAAAAATTGAATTGTCACTATTCTTCTATGGATTATTGATTATAGATATTTGTTGGTGGACTTGACCCTAAT GTTAATGCTGAAGATCTTAGGCAGCCATTCTCACAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATG TGGTTTTGTACAATTTGCAAACAGGTAAGTTCAGTCCCTCTCAAATCTTTGCATATACAGAGATAACGTTGTTATTAATC TCAATGTGTATACTAATCATTCTGATCCACCTTACCAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGCACAAC GATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCCGGTAATCTCTCTTCCTTTCACATATA GAGAAACATGCATTCTTGTTGCCATGTTATCAGGTCTATGAATCTACAGGAACAAGTGTCTTTTAATGACCAATAACATA GAAAGCACAGATGCCATATATGACACAGATATACATACTATAAAAAAACAGAAAGAGTGCATTGCATTATTAGATACAAA TACAGAAAGATGGCAATTTTTGTGCTACAATGCGTGAAATTAATACAAAGAGCAAAAATCTTAAATCAATAGAGAGAATC GATATTCTAGAAGTTAGAACTGGTTATCATAAGCATAACATAACTCTGTTTATTTACTTATTGGGAAATTCTCATTTGTA TTGGTATAAATGATCAAATTGGCAACTATATTTCAGAAGTGTGCTTTCTTGCAATAACTCACACCTAATATGAAGAAAAT GGTTCTGTTTAGTTCCGGGCTGCTAAAATCAATGAACTGAAGTTTGGTTTAATGTTCTGATATTTTGGTTTAATTTGGAT TTATCAATTTTTATTGTAACGCATATAATCACTCATTTTTTAATTGTGACGTTAAAATGAAGTGACTGTTATAGTTAAAA AGCCAAATTCATTTAATATATTCATATTCTTTTAAGACAAATTTTCTAGTAACTGCTAGAGCTTCTAATTGTCTTCATGC TGTCTGTCATTCATTATTGCAATGATTCTATCTAAATTGGTATTATATCTTTGGTCAGCAGTTTAGAGGGGATTTCGGCA GTCCTTGGAATGGGGCGTATTATGGGGGACCTGTTTATGATGGTTATGGATATGCTTTTCCGCCATCGCCTCATGATCCC AGCACATTTGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGTCACCAACAGCAAGTAAGCTGA
CDS sequence (LotjaGi1g1v0352900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATACCCTGCCGCCGCGATGGTAATGCCGCACCACATGTTGCCGCCACAGCATTACGCGCCGCCGCCGCAGGCCTA CATGCCTTACCATCAATACCAGCAGCAGGTGCCGATGCACGTGCCGTCTCACTCGCACCAGGGATCCAGCGCCGCCGATA ACAAGACGATCTGGGTCGGTGATTTGCATCACTGGATGGATGAGAATTATCTCCACCGCTGTTTTGCTTCCATCGGCGAG ATTAACTCTATTAAGGTTATTCGCAATAAGTCTACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTCTATTCACATAG CACAGCTGAGAAAGTCTTACAAACTTATGCTGGGATGTTGATGCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCAA CATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTCTCTATTTTTGTAGGAGATTTAGCTGGAGATGTTACA GATACCATGTTGCATGAAACTTTTGCTAATAAATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAATACTGG ACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCCATGAATGAAATGAATGGTGTTT ACTGTTCGAGTAGGCCTATGAGGCCAGTCAAATGGCACATCCAGCCAATCTGA
Protein sequence (LotjaGi1g1v0352900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQYPAAAMVMPHHMLPPQHYAPPPQAYMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGE INSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVT DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRPVKWHIQPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 221 | 220 | 7.0E-126 | – | |
| PANTHER | 2 | 221 | 220 | 7.0E-126 | – | |
| SUPERFAMILY | 53 | 221 | 169 | 3.46E-36 | ||
| Gene3D | 54 | 134 | 81 | 1.9E-24 | ||
| ProSiteProfiles | 55 | 135 | 81 | 14.743 | ||
| CDD | 56 | 136 | 81 | 3.69863E-47 | – | |
| SMART | 56 | 131 | 76 | 2.4E-13 | ||
| Pfam | 57 | 124 | 68 | 4.5E-14 | ||
| CDD | 147 | 221 | 75 | 3.25516E-47 | – | |
| Gene3D | 147 | 222 | 76 | 3.2E-20 | ||
| ProSiteProfiles | 148 | 221 | 74 | 15.357 | ||
| SMART | 149 | 223 | 75 | 1.4E-16 | ||
| Pfam | 150 | 219 | 70 | 7.4E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0352900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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