Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0353500 |
| Transcript ID | LotjaGi1g1v0353500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Patatin; TAIR: AT2G26560.1 phospholipase A 2A; Swiss-Prot: sp|O48723|PLP2_ARATH Patatin-like protein 2; TrEMBL-Plants: tr|G7J6A8|G7J6A8_MEDTR Patatin; Found in the gene: LotjaGi1g1v0353500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82533126..82534934) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGAACAAAATCATCCCTTCTTCAGATTCAGCCTCCCACCTATGGAAACTTGGTCACTATTCTCAGCATTGATGG GGGTGGTATTAGGGGCATTATTCCTGCAACTATTCTCGAATTCCTTGAAGCACAACTTCAGGTATATATAACATATATAC TAGTATTTTAGCTCGATGCACAGACATATATAAACATTATAATATCCATAATACACATTAGTATATAGTATTAACAAGGA TTCATATGTGCAGGAGTTGGATGGTGAGTCTGCAAGGCTTGCAGATTACTTCGATGTGATTACAGGGACAAGCACGGGCG GACTTGTAACCGCCATGTTAAGTGCTCCAAATGATAAACAGCGTCCACTTTTTGCAGCAAAGGACATCAAACCCTTTTAC TTGGAACATTGCCCCATGATCTTCCCACAACACAGGGGGCCTTTGGTATCGATAAGAAATTTGTTCAAGACAATAGGAGG ACCAAAATACAATGGGAAGTACCTTCATAAGGTGGTGAAGGAGAAGCTTGGGGAAATTCGTGTGCATGAGACACTCACCA ATGTTGTGATTCCCACTTTTGACATCAAAACAATGCAACCAACCATTTTCTCTTCTTATAAGATCAAGAGTTCCCCTTGC TTGGATGCTCAACTCTCTGATATATGCATTAGCACCTCTGCTGCACCTACTTATCTTCCCGCCTACCCTTTCAAGAACCA AGACTCTGAAGGGAATGTGCAAGAATTCAACCTTATTGATGGCGGTGTTTGTGCGAATAATCCGGTATGTATTAATTCCT TAATTGTATTATTTTTTGTTTTTGAAACTATATTGCATGTAAAAAACATGTACTAATTTGTTTTTGGTCATGATTTAATG TTACAGACTCTAGTAGCTGTGAATGAAGTAACAAAGCAGATCATTAATCAACATCCTGACTTCTTTTCCATCAAGCCCAT GGAATATGGTCGGTTCTTGATAATCTCACTAGGCACAGGGACAGCCAAGAATGAACAGAAGTTCAATGCAAAAATGGCAG CCAAATGGGGTCTATTGGATTGGTTAACCAAAAGTGGTTCTACTCCATTGATCGAATTGTTTACTCAATCATCTGGTGAT ATGGTTGATTTTCATCTTTCAACTGTTACTCAAGCACTTAATTCCCAAGACAATTACCTCCGGATACAGGTAATTAAGCT TTCTAGCTCTTGGATAATGTTATATAATTCTATTCCTATAGTATTTTATGAAAGGGCCTTTTGTGAAAGAGTATGAAAAT AAGTATTTTCCTTTTCTGAAATTCAATCAACTTGCAGGATGATACGTTGGTGGGTACAGACTCTTCAGTTGATGTCGCCA CAAAAGAGAATTTGGAAAGATTGAGTCAAATTGGTGAAAAATTGTTGAAGAAACCTGTATCTAAGGTCAATTTAGACAAT GGTGATTTGTTTGTGCCGGTTGAAAATAGGGAGACCAATGAAGATGCTCTCAGAAGGTATAAGTATAACACTAGAAAAGT TCTACTCAGTGATTATGCTTATTAATGCGATTCAGTTTATATTATTTGTCACATTTTTTGTATTAAAATTAACATGGGCT TTAATCCTTGTAGGTTTGCAAAAATACTTTCATAAGAAAGGAGACTCCGAGAAATGAAGTCGCCTCACACTAAAAAGGCA TTTGCATTGTGAAGAAACGTTTGCTCGTTGTTCAGGAATTCTATTAGGACTTGGTCTATGTTAGTCAACAAGTTTGTAAA TTTCATTTGTCTTTATTTGTTCATTTATTTTAGTGCCAGTTTGTTTTAG
CDS sequence (LotjaGi1g1v0353500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAACAAAATCATCCCTTCTTCAGATTCAGCCTCCCACCTATGGAAACTTGGTCACTATTCTCAGCATTGATGG GGGTGGTATTAGGGGCATTATTCCTGCAACTATTCTCGAATTCCTTGAAGCACAACTTCAGGAGTTGGATGGTGAGTCTG CAAGGCTTGCAGATTACTTCGATGTGATTACAGGGACAAGCACGGGCGGACTTGTAACCGCCATGTTAAGTGCTCCAAAT GATAAACAGCGTCCACTTTTTGCAGCAAAGGACATCAAACCCTTTTACTTGGAACATTGCCCCATGATCTTCCCACAACA CAGGGGGCCTTTGGTATCGATAAGAAATTTGTTCAAGACAATAGGAGGACCAAAATACAATGGGAAGTACCTTCATAAGG TGGTGAAGGAGAAGCTTGGGGAAATTCGTGTGCATGAGACACTCACCAATGTTGTGATTCCCACTTTTGACATCAAAACA ATGCAACCAACCATTTTCTCTTCTTATAAGATCAAGAGTTCCCCTTGCTTGGATGCTCAACTCTCTGATATATGCATTAG CACCTCTGCTGCACCTACTTATCTTCCCGCCTACCCTTTCAAGAACCAAGACTCTGAAGGGAATGTGCAAGAATTCAACC TTATTGATGGCGGTGTTTGTGCGAATAATCCGACTCTAGTAGCTGTGAATGAAGTAACAAAGCAGATCATTAATCAACAT CCTGACTTCTTTTCCATCAAGCCCATGGAATATGGTCGGTTCTTGATAATCTCACTAGGCACAGGGACAGCCAAGAATGA ACAGAAGTTCAATGCAAAAATGGCAGCCAAATGGGGTCTATTGGATTGGTTAACCAAAAGTGGTTCTACTCCATTGATCG AATTGTTTACTCAATCATCTGGTGATATGGTTGATTTTCATCTTTCAACTGTTACTCAAGCACTTAATTCCCAAGACAAT TACCTCCGGATACAGGATGATACGTTGGTGGGTACAGACTCTTCAGTTGATGTCGCCACAAAAGAGAATTTGGAAAGATT GAGTCAAATTGGTGAAAAATTGTTGAAGAAACCTGTATCTAAGGTCAATTTAGACAATGGTGATTTGTTTGTGCCGGTTG AAAATAGGGAGACCAATGAAGATGCTCTCAGAAGGTTTGCAAAAATACTTTCATAA
Protein sequence (LotjaGi1g1v0353500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRTKSSLLQIQPPTYGNLVTILSIDGGGIRGIIPATILEFLEAQLQELDGESARLADYFDVITGTSTGGLVTAMLSAPN DKQRPLFAAKDIKPFYLEHCPMIFPQHRGPLVSIRNLFKTIGGPKYNGKYLHKVVKEKLGEIRVHETLTNVVIPTFDIKT MQPTIFSSYKIKSSPCLDAQLSDICISTSAAPTYLPAYPFKNQDSEGNVQEFNLIDGGVCANNPTLVAVNEVTKQIINQH PDFFSIKPMEYGRFLIISLGTGTAKNEQKFNAKMAAKWGLLDWLTKSGSTPLIELFTQSSGDMVDFHLSTVTQALNSQDN YLRIQDDTLVGTDSSVDVATKENLERLSQIGEKLLKKPVSKVNLDNGDLFVPVENRETNEDALRRFAKILS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 391 | 391 | 5.9E-243 | – | |
| PANTHER | 1 | 391 | 391 | 5.9E-243 | – | |
| Gene3D | 9 | 391 | 383 | 1.3E-149 | – | |
| CDD | 17 | 367 | 351 | 0.0 | – | |
| SUPERFAMILY | 18 | 365 | 348 | 4.97E-71 | ||
| ProSiteProfiles | 23 | 229 | 207 | 37.441 | ||
| Pfam | 23 | 228 | 206 | 9.1E-21 | ||
| Coils | 39 | 59 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi1g1v0353500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…