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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0354500 |
| Transcript ID | LotjaGi1g1v0354500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TIC 22, chloroplastic; TAIR: AT4G33350.1 Tic22-like family protein; Swiss-Prot: sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic; TrEMBL-Plants: tr|G7J6C8|G7J6C8_MEDTR Inner membrane import protein Tic22, putative; Found in the gene: LotjaGi1g1v0354500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82617727..82621564) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGGTATTTGTACTTGGAACCGGGTAGAGAGGATTAGAACACGCGAAGATGGAGTCACGAGCTCAATGGAACCCGCTT CTATCATTTTCTACCTTCATCCACCAACACTGCCTCCACCTCGCAACTCGTTTCGACGAAACCAAGCGACTCGCCGGAAC CCTAGTTCAATCTCACGTCAACCCCTTCTTCCGCGCCAAACACGCCCTTGCCGCCACATTAACCTCCCACCACGTCGCCA AGTCCCTCGCCGGCACCGCCGTCTACACCGTCAGCAACTCCAACAACGAGTTCGTTCTTATCTCTGATGCCGACGCTGCT AAGTCCATTGGATTGCTTTGCTTTCGCCAGGAAGACGCTGAAGCCTTCCTTGCTCAAGTCCCTCCCTCTTTCCCTTCGAA AAATTCAATTTGTTGATTTTGATTTCATTCCAATTTCATCTAATTTGTTTGAATTTGTTGGTTTTTTTACTGGTCTAGGT TCGATCGCGGAAACGAGAACTTCGAGGCAATGCTAGGGTTGTCCCCATCACTCTTGACCAGGTCTTTCTTCTGTGAGCAA CTGGATAATTTGTGAATTGCATTAATGGTGGTGTTTGTTTATCTTTTACCTTTTACACATGAGTATATCTTTTTTGTGCT GTAGGTGTACATGTTGAAGGTTGAAGGTATTGCATTTCGATTTTTACCTGATCCTATACAAATAAAGAATGCTATGGAGG TTAGTATCAATTATATTTCTTGTACACAACGTAGAGCCAAGCGATTATTTAAGTCAAAAAGTAGTGAAGATATTGTAGGA ATTGAGTTTGATCCATTTGAAATATGATTAATGATGGAAAGAAGATTTGTCAATGAGCATGGTAGCTGCAGTGTGGGAAT TAGTTCTTTAATATCATTTTATTTTTGTGGAGCATGTATGCTAGATTGCTTGTTGAGCTAGAGACTGAGCTGTTAGGTAG TGTTTAATATCATTTTTTTTTTCATGTTTATCAGCTCAGACCAGCCAATAAGGAAGGTTTTGATGGGGTTCCTGTTTTTC AGGTTTGTTCTCTTCTTTGTTTGTAAATATCTGTTTTGAAAGGACTTTTTGGGCAATGATGGGGTTTGGGTGGGAGTTAT TAAATGATACAAATTTGTTTCCCAATGTATTTATCAGTATAACAAAGGGAGAATTACTATCTCTATCTGTACATTTTATT TTGGCTAAAAAACATTTTTTGCCCCTGATGTTTCAAGTTTGTGCAAATTATGCCCCTACTCTATTTTTGTCGATGTTTCT ACCCCTGACGTTTTCAAACAGTGCACTGTATACCCCTCCGTCAGTCAGGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGG AGAGATGAAGAAGAGTATATGAAGTTGATGATGATCAAGGAAATGATATAAATTAAATTTGCTTGATGTTTATATCAATT ATGCATGTAATTGAACTGGTTAAATGCATGTTTTGCTACTTACAGGTCTTGAGTTTGAATCTCTCTTGCCTCTTTTTTCC AATTTCACTTGTAATTTCCACGTGGCAGTTCCAAAAAATATATAAAAAAAAGTCACATCAGCTCATTCCGTTAGTTTTTT AACGTTTGACTGATGGAGGGGTAGACGATGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAGGG GCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAGTGTTTTTTAGCCTTTTATTTTTATTGAACTGATTGTATAAT GTATATAACTATTTTAGATATCCCTTTCAGTAGTCTAATATAAATCTGTGCTAGACTTGTAGTCCTTGACCATAGTTACT TTCTTGACTATTGACTGCTAATTACTTGTGCTTACAGTCAGACCTTTTGGTTGTGAAGAGGAAGAATAAGCGTTATTGCC CTGTATATTTCTCTAAGGTTTGTCTGACCCATTAATCTCTTCATTGTTTTGCTTACACTATTAAGATTTAAGACTTCATG AGGTGTGTTGCGTTATAGAATATAATGATATAGTAGTTATAGTTTGCTGGTTAAATGGACAGGAAGATATTGAGCAGGAA CTGTCCAAGGTTTCTAGAGCATCTAAAGGAGCTGGACTTTCTCAGCATATAATGGTATAGAATATGGAATCTCTTACTCT TGTTTTTGCTAGTGCCTGTGGCTGTCGGAAACTCGAGCATATTTCAAGTTTATATTAATTTTTATTCTTGAGTTTTGACA TTCCAATTTATTTGTCAGAGCTGCTTGCTAGTTTCTCTATGTTGCAGCATATTTTATTCAAACCTCAAAAAACTTTTTGT GTTTCCATGTAATTTCACGACTCATCTTGAATGAATAGTCACATCTAGTTACCTTGAAAACCTACTGAACAGTTGGTTCA ATTATAGTGATGTGCTGTGTGTAATATATTTTCCAGATGGCCGTAACAGCAGTTCCTTTTAAGGAAACAATTAGCAGAAA GTGATGATGTTATTTAAATTTTTCTTTGAACAAAACTTAAAACAATTACTTTGATCTATTAATTGGTTTTAATTCTATAA ATGTCATTTTCATGGTAACAAAGCATCTGATTGATGGAAGATTTCAATGTTGAAGGAGCAATTTAAAACTGTCTCCAATC TCCATGTGGGATTTTAGTTCATGCTAAACTCTTGTGCTCTGTCTTCCATGGAAAAGATTAGGACAGGAGGGATAATCTTC AGTTTTCTTAAAGAAACAGGAATTTTATTTAAGTGTCTGGGTTTGAGTTACTACATGGTCCTTGTATGTTAATTTCAATT GACATTCTGGTATATCTGTTGTGAGTTTTTTAAATGATAAAATAAGATACATGGTAGAGTGGATTTGTTTTTGTAATTTA TCAATCATTTGAAGTTTGCTAACTTGTTTTTAAAAATAAATGAACAGGTTGGCAGCTTTGAAGATGTACTGAGAAAAATG GAGGTAATTAAGTCTGCTTACAGGTTAATAGCTGGGAAGTAATTTGAATTCTGACTAGTTCTCTCTCTCCCATGAAACAG ATGAGTGAAGGGAATTCAGGGTGGGAGGATTTGATTTTTATTCCACCAGGAAAAAGTCATTCTCAACACATACAAGAGAT TAATGCTTGATTACCAGAGTTCAAACTTAAGCTAACCGTAATTTTATGGGGTTTTCATGAGCAAATTGGATATTGTTGTT CTCACATTCTACTACTAGTCAGCTGGTGAGATGTCAGGACCTTTGCCTTCCAATAATTGTATTCTTCTTTTTTGTTTTCT CAATATAAATTCCCTCTGATGCAGAAACTGCTTTAAAGATTCTCAGTGGATATGAGGTATATTTGTATGTGAGAAGGCAT AACTTCAGTCTTCGCTTGTGAGAGATTAATGGGAAAACCGAATAGTTGGCGAGGTTGCTAACCTACTCTTGCCCAATTCC AGTTTTGTATTATTGTAATCCTGGTCTGTTACCGTTGGTTTGGTTCAGTTAGTGTTGGTTTGATTCCATGGAAGAAGCAA TGAAAGAATTGAAAAGGAAAGAAAATGGAAAGAAAAACACCATTTTATCATTTGGCTGCGATCTAATCATGGATTAAAAA AAGTGGAATCCGCGTTAAAGTATTTCAATTTGTGTTCCTTCTAGAGTAAATTTTATCTGCTGAGCGACAACCCTTCCACT TGACACCATTTCTGTCCACCGGCACCATCTATTGCCTTCAGTTTCTAATTTATATCTCCTCTCAGACAAAGGTTTTAATA TTCATCAACTTAAAAAAACCACAAAAGGTAAGATGATCAATATCAATTCATCATTATACATCACCACATACATGCAAC
CDS sequence (LotjaGi1g1v0354500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCACGAGCTCAATGGAACCCGCTTCTATCATTTTCTACCTTCATCCACCAACACTGCCTCCACCTCGCAACTCG TTTCGACGAAACCAAGCGACTCGCCGGAACCCTAGTTCAATCTCACGTCAACCCCTTCTTCCGCGCCAAACACGCCCTTG CCGCCACATTAACCTCCCACCACGTCGCCAAGTCCCTCGCCGGCACCGCCGTCTACACCGTCAGCAACTCCAACAACGAG TTCGTTCTTATCTCTGATGCCGACGCTGCTAAGTCCATTGGATTGCTTTGCTTTCGCCAGGAAGACGCTGAAGCCTTCCT TGCTCAAGTTCGATCGCGGAAACGAGAACTTCGAGGCAATGCTAGGGTTGTCCCCATCACTCTTGACCAGGTGTACATGT TGAAGGTTGAAGGTATTGCATTTCGATTTTTACCTGATCCTATACAAATAAAGAATGCTATGGAGCTCAGACCAGCCAAT AAGGAAGGTTTTGATGGGGTTCCTGTTTTTCAGTCAGACCTTTTGGTTGTGAAGAGGAAGAATAAGCGTTATTGCCCTGT ATATTTCTCTAAGGAAGATATTGAGCAGGAACTGTCCAAGGTTTCTAGAGCATCTAAAGGAGCTGGACTTTCTCAGCATA TAATGGTTGGCAGCTTTGAAGATGTACTGAGAAAAATGGAGATGAGTGAAGGGAATTCAGGGTGGGAGGATTTGATTTTT ATTCCACCAGGAAAAAGTCATTCTCAACACATACAAGAGATTAATGCTTGA
Protein sequence (LotjaGi1g1v0354500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRAQWNPLLSFSTFIHQHCLHLATRFDETKRLAGTLVQSHVNPFFRAKHALAATLTSHHVAKSLAGTAVYTVSNSNNE FVLISDADAAKSIGLLCFRQEDAEAFLAQVRSRKRELRGNARVVPITLDQVYMLKVEGIAFRFLPDPIQIKNAMELRPAN KEGFDGVPVFQSDLLVVKRKNKRYCPVYFSKEDIEQELSKVSRASKGAGLSQHIMVGSFEDVLRKMEMSEGNSGWEDLIF IPPGKSHSQHIQEINA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 8.8E-126 | – | |
| PANTHER | 1 | 255 | 255 | 8.8E-126 | ||
| Pfam | 10 | 253 | 244 | 4.7E-108 | ||
| Gene3D | 56 | 255 | 200 | 5.6E-52 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0354500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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