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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0358000 |
| Transcript ID | LotjaGi1g1v0358000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT4G34160.1 CYCLIN D3;1; Swiss-Prot: sp|P42753|CCD31_ARATH Cyclin-D3-1; TrEMBL-Plants: tr|G7J6Z8|G7J6Z8_MEDTR Carboxy-terminal domain cyclin; Found in the gene: LotjaGi1g1v0358000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83178359..83180362) extracted from Lotus japonicus Gifu genome v1.2.
GGTATCCATTAAATTGCAGGGTACAATTGTCACGTGTCAAGTAAATGAACTGCTTCATCATCATCCTTTCAAGTCTTACA AATAACCCTCTCTTCTCTCAATCACATAGCAAGCAAAGCACCACTTGCTTGCGGCAACAACTTTTCCCTTCTCTGAGGTT TCTTTCACCATTCATGGCCTTGTTCTTCCCCTATGTGTAATGAACCAAAGATCTGTAACATCATTGAAAATGGTTCAGCC AAATTTCCTTAATCTTGATGCCCTTTACTGTTCAGAAGAACACTGGGAAGAGGAAGGACAAGATGAAGCAGAGTACTGTG GTGATTCCAGTACTAGTACTAGCACAATCATAAACTCCCCACCTTGGTTGCTAGAAAAGGACATGGTCTGGGAAGATGAA GAGCTAGCATCACTCCTAGCCAAAGAGCAGCAAAACCCACTTTGCAACTGCGATTCAGAGTTGGAAGGTGCTCGCAGAGA AGCAGTAGAGTGGATTCTGAAAGTGAATGCTCACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTCAACTACCTCG ACAGGTTTCTCTCCAGCTTCCGGTTTCAGGATATTGGGAAGCCATGGATGACTCATCTTGCTGCTGTTGCTTGCATCTCC CTCGCTGCAAAAGTGGAAGAGACCCATGTTCCTCTGTTACTCGATCTTCAAGTATGCTCTGTTCTGATACTACCCTGTTT CTGAAACAGATTACAAACTTTATGCTTAACTCTTCTTGAAATCGATTGTGTAGGTGGAGGAAAGCAAGTACTTGTTCGAA GCCAAGACGATTAAGAGGATGGAAATTTTGGTTCTTTCCACTCTGGGATGGAAGATGAATCCAGCAACCCCACTTTCGTT TATTGATTTTTTCATCAGAAGATTTGGATTGAAGGATCTTCTCTTCAGGGATTTTCTCAGGAGGTGTGAGGGTCTTCTTC TCTATGTCATTCGAGGTAATTTTTCAGTTTGCAGGGTCATTGCTGAGGAAGAATGTTTCAATTTTCAAGTTCTGGTTCGC ATGTTAACTGTTTGTTGTGTATTGTCTCAATGGCAGATTCCAGGTTTGTGAGTTATCTACCTTCTGTGTTGGCAACTGCT ACAATGTTGTACGTTATCAATAGTGTAGAGCCTTGTCTTGGAGTTGAATACCAAACCCAGATCATTGGTATTCTAGGAAT CAACAAGGTTAGTGTTCATTGCACACTACATTGAACTTTATTACATATTATTTGTTATTGGTTTGCTTATATAGTTAAAT TTCTTGATTATTACAGGACAAGGTTGATGAATGTTGCAAAGTGATGTTGGAAATGTGGTCAGGTATTGATGATCAGGGGA ATAAGCTATGCATGAAACGCAAGTTTGGATTGATTCCTGGTAGCCCAAATGGAGTAGTGGATGTTTGTTTTAGCTGTGAT AGCTCGAATGACTCATGGGCAGTGGCTGTGAATTCTGTGACATCTTCACCGGAGCCATTGCCCAAGAAGATCAGGACTCA GGACCAGCTTATGCAAAATCACTTTCATCTCTGATTTTCTAAGCATTCCTCACTAGCTACCTTAAATTTATCTCAACAAC TCTCACTTCCTCCAACTTCAACTTTTGTCTCTTATGGGAACTTCAATGATCAAGCATCTTTCTTCTTCTGTTTCTGAGGG GGAAATTAAATTGCCAACCATCTCTGCAGAAGACTAGTTCCATTCACCAGTCATTATCAATTGTAATAGGCCTTCCCCAA AACCTGAGACTGGGGAGCAGAGATTGTTGGCATTTTATGAGGAAAAAAAATTATATATGATAATGAAAATAATATTTTAA AAAGCATGAGACATATCAATGTGTGTACTTATTGTCTTCTACTTTGACCAATATTTATGCATTGTCAAATGAGTTTAATT TTGTTTACTTTTACATTATATTGTATAGTGTATTTGTACGTGTGTTTGGATACTGGAGTGGAGTACTAACCTGACATAAA TTTC
CDS sequence (LotjaGi1g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCAAAGATCTGTAACATCATTGAAAATGGTTCAGCCAAATTTCCTTAATCTTGATGCCCTTTACTGTTCAGAAGA ACACTGGGAAGAGGAAGGACAAGATGAAGCAGAGTACTGTGGTGATTCCAGTACTAGTACTAGCACAATCATAAACTCCC CACCTTGGTTGCTAGAAAAGGACATGGTCTGGGAAGATGAAGAGCTAGCATCACTCCTAGCCAAAGAGCAGCAAAACCCA CTTTGCAACTGCGATTCAGAGTTGGAAGGTGCTCGCAGAGAAGCAGTAGAGTGGATTCTGAAAGTGAATGCTCACTACTC CTTCTCTGCTCTCACTGCTGTTCTTGCTGTCAACTACCTCGACAGGTTTCTCTCCAGCTTCCGGTTTCAGGATATTGGGA AGCCATGGATGACTCATCTTGCTGCTGTTGCTTGCATCTCCCTCGCTGCAAAAGTGGAAGAGACCCATGTTCCTCTGTTA CTCGATCTTCAAGTGGAGGAAAGCAAGTACTTGTTCGAAGCCAAGACGATTAAGAGGATGGAAATTTTGGTTCTTTCCAC TCTGGGATGGAAGATGAATCCAGCAACCCCACTTTCGTTTATTGATTTTTTCATCAGAAGATTTGGATTGAAGGATCTTC TCTTCAGGGATTTTCTCAGGAGGTGTGAGGGTCTTCTTCTCTATGTCATTCGAGATTCCAGGTTTGTGAGTTATCTACCT TCTGTGTTGGCAACTGCTACAATGTTGTACGTTATCAATAGTGTAGAGCCTTGTCTTGGAGTTGAATACCAAACCCAGAT CATTGGTATTCTAGGAATCAACAAGGACAAGGTTGATGAATGTTGCAAAGTGATGTTGGAAATGTGGTCAGGTATTGATG ATCAGGGGAATAAGCTATGCATGAAACGCAAGTTTGGATTGATTCCTGGTAGCCCAAATGGAGTAGTGGATGTTTGTTTT AGCTGTGATAGCTCGAATGACTCATGGGCAGTGGCTGTGAATTCTGTGACATCTTCACCGGAGCCATTGCCCAAGAAGAT CAGGACTCAGGACCAGCTTATGCAAAATCACTTTCATCTCTGA
Protein sequence (LotjaGi1g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQRSVTSLKMVQPNFLNLDALYCSEEHWEEEGQDEAEYCGDSSTSTSTIINSPPWLLEKDMVWEDEELASLLAKEQQNP LCNCDSELEGARREAVEWILKVNAHYSFSALTAVLAVNYLDRFLSSFRFQDIGKPWMTHLAAVACISLAAKVEETHVPLL LDLQVEESKYLFEAKTIKRMEILVLSTLGWKMNPATPLSFIDFFIRRFGLKDLLFRDFLRRCEGLLLYVIRDSRFVSYLP SVLATATMLYVINSVEPCLGVEYQTQIIGILGINKDKVDECCKVMLEMWSGIDDQGNKLCMKRKFGLIPGSPNGVVDVCF SCDSSNDSWAVAVNSVTSSPEPLPKKIRTQDQLMQNHFHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 320 | 305 | 3.6E-124 | ||
| PANTHER | 16 | 320 | 305 | 3.6E-124 | – | |
| SUPERFAMILY | 63 | 193 | 131 | 5.45E-33 | ||
| Pfam | 88 | 193 | 106 | 1.4E-24 | ||
| Gene3D | 89 | 193 | 105 | 5.2E-49 | – | |
| ProSitePatterns | 92 | 123 | 32 | - | ||
| CDD | 92 | 185 | 94 | 3.01591E-15 | ||
| SMART | 97 | 186 | 90 | 2.8E-12 | ||
| SUPERFAMILY | 178 | 296 | 119 | 8.17E-8 | ||
| Gene3D | 194 | 283 | 90 | 5.2E-49 | – | |
| SMART | 195 | 324 | 130 | 3.4E-7 | ||
| Pfam | 196 | 289 | 94 | 3.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0358000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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