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LotjaGi1g1v0358100.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0358100
Transcript ID	LotjaGi1g1v0358100.2
Related isoforms 1	LotjaGi1g1v0358100.1
Lotus japonicus genome version	Gifu v1.2
Description	Isoaspartyl peptidase/L-asparaginase; TAIR: AT3G16150.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp\|Q8GXG1\|ASPGB_ARATH Probable isoaspartyl peptidase/L-asparaginase 2; TrEMBL-Plants: tr\|A0A0L9V1K5\|A0A0L9V1K5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0358100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:83239634..83240604) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGCATCCATCATGGACGGCACCAAGCGAAGATGCGGCGCTGTTTCCGGCCTCACCACCGTCAAAAACCCCATCTC CCTCGCTCGCCTTGTCATGGACAAATCCCCTCATTCCTACCTCGCCTTCTCCGGCGCTGAAGATTTCGCCAAGCAACAAG TAAGTTATTCTCCATCCCTATTTGATTTTATGTGTTTATTGTTACGATTCAGCTCTTGTCATTTCGACCCTTGTCATTTC GATTAGATATATATGCACATTGAGTTTTATTCAATTGCTAAAAGATACCGTTGTATTTTTGGCAGGGAGTGGAAGTTGTG GAGAATGAATACTTCATAACTCCTGATAATGTTGGTATGCTGAAACTGGCAAAAGAGGCAAACACGATTCTGGTACGCAA TTCAAGGGAATCAAATCTATATTCAGTTTAAAAAAACGTGGATTATATTTCTAATGAATGTTCTTTTTTTTTTGCGATTC AGTTTGATTACAGGATTCCGAACGAAACGTGCGGTGCGGGAGTTGAGAGTCCACTGAAGATGAATGGACTGCCCCTCAGC GTATACGCACCGGAGACTGTTGGGTGTGTGGTGGTTGACAGCGAGGGGAGGTGTGCCGCCGCCACGTCGACAGGGGGCCT GATGAACAAGATGACCGGTCGGATCGGTGACTCGCCGCTCATCGGCGCTGGGACGTACGCGTGTGAGGTTTGCGGCGTTT CATGCACCGGGGAAGGGGAGGCGATCATACGTGGCACGCTGGCGCGTGAGGTGGCGGCGGTGATAGAGTACAAGGTGCTC GGCCTTCAGGAGGCGGTGGACTTTGTTATCAAAACACGGCTGGATGAAGGGATGGCGGGCCTCATTGCGGTGTCGAATAA GGGTGAAGTGGCCTGTGGGTTTAACTGTAATGGCATGTTTAGGGGTACTGCTACTGAGGATGGGTTCATGGAGGTGGCAA TTTGGGAATGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0358100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGCATCCATCATGGACGGCACCAAGCGAAGATGCGGCGCTGTTTCCGGCCTCACCACCGTCAAAAACCCCATCTC CCTCGCTCGCCTTGTCATGGACAAATCCCCTCATTCCTACCTCGCCTTCTCCGGCGCTGAAGATTTCGCCAAGCAACAAG GAGTGGAAGTTGTGGAGAATGAATACTTCATAACTCCTGATAATGTTGGTATGCTGAAACTGGCAAAAGAGGCAAACACG ATTCTGTTTGATTACAGGATTCCGAACGAAACGTGCGGTGCGGGAGTTGAGAGTCCACTGAAGATGAATGGACTGCCCCT CAGCGTATACGCACCGGAGACTGTTGGGTGTGTGGTGGTTGACAGCGAGGGGAGGTGTGCCGCCGCCACGTCGACAGGGG GCCTGATGAACAAGATGACCGGTCGGATCGGTGACTCGCCGCTCATCGGCGCTGGGACGTACGCGTGTGAGGTTTGCGGC GTTTCATGCACCGGGGAAGGGGAGGCGATCATACGTGGCACGCTGGCGCGTGAGGTGGCGGCGGTGATAGAGTACAAGGT GCTCGGCCTTCAGGAGGCGGTGGACTTTGTTATCAAAACACGGCTGGATGAAGGGATGGCGGGCCTCATTGCGGTGTCGA ATAAGGGTGAAGTGGCCTGTGGGTTTAACTGTAATGGCATGTTTAGGGGTACTGCTACTGAGGATGGGTTCATGGAGGTG GCAATTTGGGAATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0358100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEASIMDGTKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFSGAEDFAKQQGVEVVENEYFITPDNVGMLKLAKEANT ILFDYRIPNETCGAGVESPLKMNGLPLSVYAPETVGCVVVDSEGRCAAATSTGGLMNKMTGRIGDSPLIGAGTYACEVCG VSCTGEGEAIIRGTLAREVAAVIEYKVLGLQEAVDFVIKTRLDEGMAGLIAVSNKGEVACGFNCNGMFRGTATEDGFMEV AIWE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10188:SF13 View details on PTHR10188:SF13 Search for proteins/transripts with this domain View external data on PTHR10188:SF13	1	243	243	6.1E-117	–
PANTHER	PTHR10188 View details on PTHR10188 Search for proteins/transripts with this domain View external data on PTHR10188	1	243	243	6.1E-117	IPR000246 Show description in modal box View details on IPR000246 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01112 View details on PF01112 Search for proteins/transripts with this domain View external data on PF01112	1	243	243	3.6E-82	IPR000246 Show description in modal box View details on IPR000246 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF56235 View details on SSF56235 Search for proteins/transripts with this domain View external data on SSF56235	1	243	243	2.83E-67	IPR029055 Show description in modal box View details on IPR029055 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.60.20.30 View details on G3DSA:3.60.20.30 Search for proteins/transripts with this domain View external data on G3DSA:3.60.20.30	114	244	131	6.7E-50	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016787 View details of GO:0016787 AmiGO InterPro QuickGO	Molecular function	Hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.	Subterm of View details of GO:0003824

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0358100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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