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LotjaGi1g1v0359300.1

Overview

Field Value
Gene ID LotjaGi1g1v0359300
Transcript ID LotjaGi1g1v0359300.1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT1G22130.1 AGAMOUS-like 104; Swiss-Prot: sp|Q9LM46|AG104_ARATH Agamous-like MADS-box protein AGL104; TrEMBL-Plants: tr|G7ZXM5|G7ZXM5_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi1g1v0359300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:83402728..83405300) extracted from Lotus japonicus Gifu genome v1.2.

CCTCCACCACGTTCAATTCATATCTATAAATCTCACGAGGGGCTCATTTAATGCTGTTTCCTTTGCCTATATATTTGACT TCTCATCATCATAGATGCTTAATTTCCATGAAGGTGAATTATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACA CAACAAATAGACAAGTTACTTTCTCAAAGAGGAGGAATGGGCTGATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGAT GTTGATGTGGCTCTAATCATGTTTTCCCCATCTGGAAGAGCCTGTCTCTTCTCAGGCAATAGAAGGTTAATTGGTGAACT CCTGTGAAATAATGTGTCTACTTTTTTTTCCTGTCAATTTATTCATCTCATTTTTTATTTCAGAAGTTTTATTATTATTC AAATGATCTACATAGCTCATTTTTTTGTTATCTATGTTTTGAAGCATTGAAGAAATTCTAGAACGATATATAAATCTCCC GGAGAGTGAACGCGGAAGGTAAGACTTGCTTATCAAAATAATTTCCCGGACTTTCATTATAATTTATAAGAGTTATGTTC ACTTTTTTTATCTTAAATTCCAAGCTAGCGTCTATTTAGGGCGATTAGTACTTCTTAATTTATCCTAATGTTTCTACCTT TCATGTATTGGCCTTGTGAATTCTTTGTTACCGTGCAACCCTTAAGGACACATAATCAAGAGGTAATTTTTAGTCTTGTA TCATATAGCATTTTTTAGATGGATATTAATTTTGAGAAGTTGATGGGGATATCATTCTGAAATTATAAATTTTGTATTCT CTTTAGCAAATCCAAAAGGTGCTTTGTAAGATGAAAGCTGAGGGTGATCAAACATGCCAAGCTCCAAGGTATTTCCTTTA GCTCTTGTCTGGTTTGTTAATTTGGGGTTTGATGATTTATCATGAAGTTTAAATCTTAAGCTGATGTGTTTGCAGCCCGG TGATTACAGACTCCCAACTTGAGGTATTTGTTATATGATCTAGCTCTGATATAATTCCATTTTCCAACTTCAAATAATGT TACATGTTTTTGACTGGTCATTCTATGCGACATTCAGGAGATTCAAAGACAAATTTTTCTTTGCAAGTCTCAATTGGAAG AGATGGAGAAGCGACTGAGGTTCCTTTGAATTTATCATTTCTCACTATTTACATATCATCATTAATTGAAAATCAAAAGC AAAATTATATTATGTTATGATGGAATTAATATAGCATTTCCACCATTATTTCACACTATATTTCGTTTAGGGTATTTGAA GGTGATCCTTCTGAGATCACAACTCTGTGTGAGGCTGAGTATCGTGAAAAAGTCCTTCAGGAAACTCTAAAACAAGTGCA ACTAAGAAAAGTAAGTTTTATTTCTTAGTTTAACTAACATCGACAGAAGCGACATAATACCGCTAGTGTTTAAACTTATA TGCAAATTATATTTAGAAATTTAAGGATTGAATTAAGCTTGTTAAATGTTTAAAAAAAATATCTTACCTGTAAATTAATC TGATTAGGTACACCTTGCAAAAATTGTAGATGGATTTGTTAGCAGAACCTCGAATACATTAGACTGGTTTCCACAGGGAG ATCCACATGTTCATATTATGAACCTCGCCAATGCTTATGACCCTGCTCCTCTCAGGTACTTTTCATTGGCAATTTGGCAT TGATCCATTTGTTTGTAGATTAACTGCATCTGCATGTTTAGAAACAAGATAATTTTTTACGTTATGAGAAATGAATCGCT CTGAAGTCCTCAGTAAATTTGTAAAGGGAGAAGTGATTCTTAAATATTCAAACGTGGAACTAAGCATGCTACAACTGTGT ATAAAGTTGTTTATCTCTCTTTTTTCTGCACACAGTGATCAACAATCAATTAGTAATGTTGTTGATATGGTAACGCCAAC TTCAACCCTTCTATACACAACAAACATAGATCATGGAGCTCAAATGAATCCTGGCAATAGAGTAGTGGCTGGCATAAATA ACACACTGCATCCTCAGTTTGAACCAGTTATCGACTTCAACTCATCTTCTTGGGGACATCTCCATCATTTAGGTACTTAC TGAAATATAATCTTGATAAAAGTACAGGTTTGGAACCATTATGTTTGTGAATTGTAGTAGATGCTGTATATTGATGTTTT AACTATTGACAGAGAGTGGATCAATGTCAGTTGCAGAAACACGGGAAGGACAACTACTCGAACAGTATTTTTCTCAGTTT ACTCCATCAACTAACTTAATGCCCAATCACAATCAAACTCATGCATGATATAAGGTTACTATGTACATTCTTTATGGAAA ATTACAAACTGCTTACACGGAGAAGATAGGCAAAAGTTGAATATGTATTAGTACTTCTGCCGGCACCAGCAGAATAACAG CTTTTGATACATTTGTATCGTTTGGCTTCCATGTTTATAACTTGTTGGCAAATTCTAACTGGATGTATCATGTATGTAAT TGCTAGTTTTATGATATAAAGTTTTTTATGAAACGTTTCATGAGAACTTACCAAATGTCTTGCCTATAATTTCCTTTTTC ATTCAGAACTAAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0359300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGACAAGTTACTTTCTCAAAGAGGAGGAATGG GCTGATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTAATCATGTTTTCCCCATCTGGAAGAG CCTGTCTCTTCTCAGGCAATAGAAGCATTGAAGAAATTCTAGAACGATATATAAATCTCCCGGAGAGTGAACGCGGAAGG ACACATAATCAAGAGCAAATCCAAAAGGTGCTTTGTAAGATGAAAGCTGAGGGTGATCAAACATGCCAAGCTCCAAGCCC GGTGATTACAGACTCCCAACTTGAGGAGATTCAAAGACAAATTTTTCTTTGCAAGTCTCAATTGGAAGAGATGGAGAAGC GACTGAGGGTATTTGAAGGTGATCCTTCTGAGATCACAACTCTGTGTGAGGCTGAGTATCGTGAAAAAGTCCTTCAGGAA ACTCTAAAACAAGTGCAACTAAGAAAAGTACACCTTGCAAAAATTGTAGATGGATTTGTTAGCAGAACCTCGAATACATT AGACTGGTTTCCACAGGGAGATCCACATGTTCATATTATGAACCTCGCCAATGCTTATGACCCTGCTCCTCTCAGTGATC AACAATCAATTAGTAATGTTGTTGATATGGTAACGCCAACTTCAACCCTTCTATACACAACAAACATAGATCATGGAGCT CAAATGAATCCTGGCAATAGAGTAGTGGCTGGCATAAATAACACACTGCATCCTCAGTTTGAACCAGTTATCGACTTCAA CTCATCTTCTTGGGGACATCTCCATCATTTAGAGAGTGGATCAATGTCAGTTGCAGAAACACGGGAAGGACAACTACTCG AACAGTATTTTTCTCAGTTTACTCCATCAACTAACTTAATGCCCAATCACAATCAAACTCATGCATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0359300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRACLFSGNRSIEEILERYINLPESERGR THNQEQIQKVLCKMKAEGDQTCQAPSPVITDSQLEEIQRQIFLCKSQLEEMEKRLRVFEGDPSEITTLCEAEYREKVLQE TLKQVQLRKVHLAKIVDGFVSRTSNTLDWFPQGDPHVHIMNLANAYDPAPLSDQQSISNVVDMVTPTSTLLYTTNIDHGA QMNPGNRVVAGINNTLHPQFEPVIDFNSSSWGHLHHLESGSMSVAETREGQLLEQYFSQFTPSTNLMPNHNQTHA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00432
1 60 60 3.6E-36
IPR002100
ProSiteProfiles
PS50066
1 61 61 28.917
IPR002100
SUPERFAMILY
SSF55455
2 83 82 1.83E-30
IPR036879
CDD
cd00265
2 76 75 6.38072E-39
IPR033896
PANTHER
PTHR11945:SF506
2 213 212 1.2E-85 –
PANTHER
PTHR11945
2 213 212 1.2E-85 –
PRINTS
PR00404
3 23 21 7.7E-25
IPR002100
Pfam
PF00319
10 54 45 1.7E-25
IPR002100
Gene3D
G3DSA:3.40.1810.10
13 95 83 1.5E-27
IPR036879
PRINTS
PR00404
23 38 16 7.7E-25
IPR002100
PRINTS
PR00404
38 59 22 7.7E-25
IPR002100
Coils
Coil
114 134 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0359300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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