Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0361300 |
| Transcript ID | LotjaGi1g1v0361300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G37630.1 cyclin d5;1; Swiss-Prot: sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1; TrEMBL-Plants: tr|A0A151TTK4|A0A151TTK4_CAJCA Cyclin-D5-1; Found in the gene: LotjaGi1g1v0361300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83605423..83608819) extracted from Lotus japonicus Gifu genome v1.2.
AAACACTTTTCTCAGTCAAACACCTCACTCACCAGTCACCCCCTCGATACTCGACATAAAACACACACTAAAATCTCGCC ACCCAAACATGCCATTACCCAACACATGATGAATACATGATATATCATCAATGTTTTCAAACTGTAACAGCTGCAACAAC TGCTTTAACATTTCCACCTAAATCATAGCCTTTTCCACTTCTTCCTCCTCTTGTTCTTCTTGACCCCTTAATTCCTACTT TGGTCAATCATTTAATATAATACATAATATTATTAATATAACACACTCATAGTCACACACATGTTTTTTCTTCATTAAAT CTCTTTTCAAACACAGATTATCAGAAAAGATATGGATGATCTTTCTTCCACTTCCAGCCTTCTCTGTGAAGAAAACGTGA CTTGCTTGGGAGATGAAGATGAACAACAACAACTGCAACACCCTTTCATTCAATCAGAACTGGGTTTTTGTGATGAGCAT GTTGCTGTTCTGATTGAGAGAGAGGCTGTTTTTGGGTTCAAAAAGGATGAAAGTTTGCTCATTGAGGACTGGTTGAAACA TGCCCGAATGGATGCAATCAATTGGATTCTCAAAGTTAGTACAATGATCCATTTTTTTCTTGTGCTTTTTGCTTGAACTT CATTAATCAATCAATCTGCAATTGGAAACAAACAAGTATTGATTTTTCTGTTTTTGTCTTGTTTTAGACCAGAGCAACAT TTGGTTTTCGCTTTCAAACAGCTTATTTGTCTGTCACATACTTCGATCGAATCCTTTCTAAGCGATCCGTTGATGTAAGC TCAAATGTTATTCATCCACCAATGTCAAAGTTGATCAATTTATTGAGTTTTCTTTAGTCTAATTCTCTACACTTTTTTGT TTCAACTTTCAATCTTATGCAGAGTGAAAACAAGTTTTGGGCAATTCGGTTATTATCAATTGCATGTCTTTCATTGGCTG CAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTTCATTGGGAAGATTATTCATTTCAGGGAAAAGTGATTCAG AATATGGAGCTTTTGGTGCTGACCACTTTGGAGTGGAACATGGACATTGTCACCCCCTTTGCTTTTCTTCATTATTTTGT CACAAAGTTATGCAGTGAATCCCCTCCAAGTCCTATTTTTTCCAAGACCATACAACTCATTGTAGCCACAATGAAAGGTG AAAAAAATGAATTAGCATGTTTGTTCGAATCAATTCTGACACTAAGAATCTACTCGCACAAGTCTAATTGATTTTGGCTT TAGAATCAATTGTGGAAATATTTCCAAACATGTACCAATTCTATTTCCACACGCATTAAGCAAATATTTGTTCTATTGTG CAGAGGTCAATTTAATGGATCACAAACCGTCTGTTATTGCAGCAGCTGCTACTTTGGTGGCATTGGATCAGAAATTGACC ATAGAAGCAGTGAAGTTGAAGATGAGTTCAATTCCTCAACTTCAGCTTATTGAACCTGTGAGTTCTGTATTTTATATTTT GGTTAACAGAAGCCAAAACCATGCATAGAAGAACATGTTCACTGATAGTTAGTGATTGATTTTGGCTTTCGTCACAGAAT GATGTATTTGGGTGCTACATTCTAATTCAAAGATTATATGAGGAGGAGAAGACTAGAGGAGACAAGCTTTTACATACTCC AAATTCTTCACCCTTCCGATCCAGGCCAATTGACATGACAGAAAACTCTCAAGCTACTTCTTCTAAGAGAAGAAGACTCA CGTTTGATGATGAACAAAGTCATGATGGCAAGGGACTTGACCAGGAAAGTCCAAAACCTTGAAGTTTTTAACAATTTTAT GTGATGATTATGTGTTATCCTTTTATGTTACTTTATTTATTTATTTTTAGACAGGGGGAAAACCCTCAAGAGAAAGGTAT TGATTGTTACTGCACTAAAAAATTGAAATAGAGAGGTGGAAACAAGGAAAAAAGAATCAGACTTTGGTATAGATTACACT AGTTGAAATGCTAATAACACCAGATACCAGAAAGCTGTAGAGACAGCTAGTTAGGCCATAGTTGTTTCTGTTCTACACTT TTTTTTATAGCCTTTTCCCCATTACTAGTCTTGTTATTTGGTTTCCTTTAGTCTTTTTAACCTTGTCACATCTCTTGGAA CCTAACTTTATATGGGTGGTTGGGATGCTTTGGTAATGTCTTCAGAAAGCAGAAAGAGAGAACTGTTTGTGTAATTGGGA GCATGGCCTGTGTCTGAATAATGGCCATCACAATTTTTTTGTAAAGATGAATGTGATTGGATTTGTTTGAATGTTTGGGA CTGACTTTAAGGGAGGACCTACCGTTTTGTCTCCAAATTTCATTGGTTTCGTTGTGTTAAGGGGTCATGAAACCCAACAC ATTCAAAAGGATTTCTTTGTTGCATATGTTCTGAAGCAATAGATTTTTGTGGACATTCTATGTTTTCAGCAACTGAGTAT GTTGTTTGTGTAACATCCTAAATTTGTTCTGAGACTATAGTCCTAGTATTGTACAAGGAAACAGAAAACTGAAATTCAAA TGAAATGAATGCTTCCATCGATTTTTGCACAAAACATTCTCATCCTTGGTTGAGAATGAAAGTAGTAGTACCATTGCCAT TCGTTTGGTGAACTCCATACCAGTAATATTTGTGAATTTGACCACTGATTAAAAAAAGAAAATAGAGGACATTTGCATAC AGAGATTGGTTTCCTTATTTAATATATTTGATGATTAGTAGGTGAGCCATTATCACACATGAAATTGACTCTTCCACATG TGTATAGACCGACAATCTTAAGTGCATGTTTAGATACACGATGAGAATCACATTGAATCTAAAACCAGGGTTGCAAAAAA CAGTTTCCCTTTACTTTAGCGATTATCCACCGTAATTTTGGCCTCATTGTTGTTTTTCATCATGTATCCAAACATGCATG TCAAGACCTAGTTGCTGCCTCCCTACCGGCCCTTGACTTCCTGCATCCGAATACAATGCATAATGCAGTCACTACAGTCG GTAAATTATAATCTTTGAATGAAGATCACATGGTCTACAATTTTCACAACAAATTGAAGTTAAAACATGAACTTAAAACC AGAGTCATCCAATCACCACTCAATGGCTACGATTGAATTGCTGTAGTAACTGCATTATTTTTTTGACTGGATCAAATCTA AATCCCTCCCTACTCCATAGTTAGAACAAGTGAAAGAATGAAAATTATGAAATAGAAATGTTGAAAGGTCAACCTGAAGT CCGGGAGACATGTTTGGTGTCAGCACTCAGAGTGGTACTTTTACTGAACAAGCCTTGGAGTTGGGAGACTCATCTTCAAT GCAGAGCATTCTATTATTATTTTTAGTGGCCTGCTTT
CDS sequence (LotjaGi1g1v0361300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATCTTTCTTCCACTTCCAGCCTTCTCTGTGAAGAAAACGTGACTTGCTTGGGAGATGAAGATGAACAACAACA ACTGCAACACCCTTTCATTCAATCAGAACTGGGTTTTTGTGATGAGCATGTTGCTGTTCTGATTGAGAGAGAGGCTGTTT TTGGGTTCAAAAAGGATGAAAGTTTGCTCATTGAGGACTGGTTGAAACATGCCCGAATGGATGCAATCAATTGGATTCTC AAAACCAGAGCAACATTTGGTTTTCGCTTTCAAACAGCTTATTTGTCTGTCACATACTTCGATCGAATCCTTTCTAAGCG ATCCGTTGATAGTGAAAACAAGTTTTGGGCAATTCGGTTATTATCAATTGCATGTCTTTCATTGGCTGCAAAGATGGAGG AATGCAATGTGCCAGGGCTATCAGAGTTTCATTGGGAAGATTATTCATTTCAGGGAAAAGTGATTCAGAATATGGAGCTT TTGGTGCTGACCACTTTGGAGTGGAACATGGACATTGTCACCCCCTTTGCTTTTCTTCATTATTTTGTCACAAAGTTATG CAGTGAATCCCCTCCAAGTCCTATTTTTTCCAAGACCATACAACTCATTGTAGCCACAATGAAAGAGGTCAATTTAATGG ATCACAAACCGTCTGTTATTGCAGCAGCTGCTACTTTGGTGGCATTGGATCAGAAATTGACCATAGAAGCAGTGAAGTTG AAGATGAGTTCAATTCCTCAACTTCAGCTTATTGAACCTAATGATGTATTTGGGTGCTACATTCTAATTCAAAGATTATA TGAGGAGGAGAAGACTAGAGGAGACAAGCTTTTACATACTCCAAATTCTTCACCCTTCCGATCCAGGCCAATTGACATGA CAGAAAACTCTCAAGCTACTTCTTCTAAGAGAAGAAGACTCACGTTTGATGATGAACAAAGTCATGATGGCAAGGGACTT GACCAGGAAAGTCCAAAACCTTGA
Protein sequence (LotjaGi1g1v0361300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDLSSTSSLLCEENVTCLGDEDEQQQLQHPFIQSELGFCDEHVAVLIEREAVFGFKKDESLLIEDWLKHARMDAINWIL KTRATFGFRFQTAYLSVTYFDRILSKRSVDSENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWEDYSFQGKVIQNMEL LVLTTLEWNMDIVTPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVALDQKLTIEAVKL KMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTPNSSPFRSRPIDMTENSQATSSKRRRLTFDDEQSHDGKGL DQESPKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 289 | 283 | 6.7E-96 | ||
| PANTHER | 7 | 289 | 283 | 6.7E-96 | – | |
| SUPERFAMILY | 40 | 170 | 131 | 2.4E-27 | ||
| Gene3D | 66 | 171 | 106 | 6.7E-38 | – | |
| Pfam | 69 | 170 | 102 | 7.3E-23 | ||
| CDD | 72 | 163 | 92 | 1.95847E-11 | ||
| ProSitePatterns | 72 | 103 | 32 | - | ||
| SMART | 77 | 164 | 88 | 1.3E-9 | ||
| SUPERFAMILY | 155 | 245 | 91 | 1.31E-7 | ||
| Gene3D | 172 | 241 | 70 | 6.7E-38 | – | |
| Pfam | 173 | 272 | 100 | 4.8E-7 | ||
| MobiDBLite | 274 | 327 | 54 | - | – | |
| MobiDBLite | 278 | 303 | 26 | - | – | |
| MobiDBLite | 304 | 327 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0361300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…