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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0362400 |
| Transcript ID | LotjaGi1g1v0362400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane and coiled-coil domain-containing protein 6; TAIR: AT1G58420.1 Uncharacterized conserved protein UCP031279; Swiss-Prot: sp|Q96DC7|TMCO6_HUMAN Transmembrane and coiled-coil domain-containing protein 6; TrEMBL-Plants: tr|A0A0L9UI23|A0A0L9UI23_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0362400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83750331..83753102) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTGAGGTTCCCCATTTAAACTTGTTCTTATCTTATGAAGGTTTCTTCTTGACAAGGTATGGTGTGCTCTGAAAAAGT CCATGTGGTATTCACAGTTTCTTACCAACCTTCCTCCATCACTTTCCCTCACACACATCACTACAAAAATCATTGTATCA AACAATTTCAATATATTCACATAACATTTCTCTATTACGGCCCAGTTTTGAAGAGCTTATTTGAGCTTATCTGACAGCAT AAGCTCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTCTGCCATAAGCTATTTTCAGCTTATTTTCATA AGCTGCTCAGGATAGCTTATGAAAAACAGCTTATGCTTATACACAGCTTATTTTTAATTTATTTCAATAAATTTTTAAAA ATAGCTTATGAATAAGCGCTTATGCCATAAGCGCTTATGACCATAAGCGCTTAATTAAGCTGTTTATCCAAACGGGGCCT ACATCTAAGTTTCATTCTTTTTTTTTCTTCTTATCTCTTCTTTTTCGATCATATCACTAAACATCATAATTAGTGTGGAC AAAACATTTTCCGAACCAATATATAAACCCTTTCTTTCTTTCTCACACCCCACCACCCACCACCTGTCTCCTTACACTAA AACACACTCATTCCAATTCTTCTTCATCATATTATTTTATATGTTATCATCATATTCCAATTATTATTACAAGTAGTAAT AAAGTTGTATTTTGCGTGTGTGTTGAATTTTATTCAAGGTTGAGTAGTGGAACAACCTGCAAATTGAAGAAGATGAGCAG AAAACAGGGGAAGAAGGAGCAGAAGCAGCAGAACAAGGTGGTGAGGATCATGACAACGCCGTTTCGCGTTCTCGGAAAAG CCAAGGACATGTACGTCCGGAGCATCACCAAGTGCGGCCACAACATGAGCTACAGCAGCCAGGTCGACGCGGCGGGGCCA TTCGCCGCTCTTCCCCGGAGCTACAGCACCACCACGGCGATGTCGAGTGAAAGCGAGGATTTCGCTGAGCTCATGAGAGC AGCTTCAGCTAGAACCTTGATTAACAGAATTGATGTTGATTTGGTTCTCAAACAGCAGCAGGATCAGCAACTACAACAGC AGCAGCTGCAACAACCACCGGTGAATGGTGGTTTGCCGAAGTCGGTGAGTGTTGGCATGGGGAGGATTGATGAGGATAAG CCTTTTGATTTTGGCGATGGTGGTGACCTTCCGGCTTCTTATCCAAGAAGTAGAAGCTATGCTGTTGGGAAGAATCCAAG GGGTGTTATGTAATCGATTGATCTCTCTGATCATCAGGATCATTGATTGTTTGCGCTCTGGTAATTTAATTTTATTGGAT GAATGGAATTGAATTATGTTTTGATTTGATTTTGGTGTTGGTGTTTTGAGTTGGGATGTTTGAAAGGAACGATTTCATGT ACAATTTAGTTAGATACAGATAGATTAAGATAGATCATGGTTCGAATTCATTGTGACTAGTAAAATCTCACTTAATGAAT AACCCTTCGGTGATACTCCAATCTAGAAGTGAGATTCTGCTGGTTTCCCAACCTGCCACTATCGTCTGCCATATAGTTTG AACTCGAGATTTTTTCTCCATTCTACCATTTTTATAACTAAAATATCTTTTTAGTGATGAGATATCTAAATGACCCATGA GAAAGTTAGGTTAAATGATTGTGGATTTTTCAATGATTGTGGTTGTTACAGTAGAATTTCACGAAGATAATTAGGTAAAA AAATGTATTGTAAATATGAAACAGATTTAATATTTTTAATTGATAATCATGCGTGATATAAAAAAATTTAGTTAAGAATT AATGTATCTATTTTGCTTACACGTTGTTAGATATGAAAGGGGCTGGGACAAGACGGCGAGAGGAGGATTAATGTTATTAA ACATGGTATTAATTTGTCTGTTGAATGGAAGATACTACCTGGGACTGGGAGGAATGAGTCCACTGGGAGCGAAACAGGAG AGTAATGACAAAAAGTAATTCTGGTAGGGTTGGTGGAAGGAATGAGAGAGTTATAACTTAAATGCTGGTTGATATGCTAG TCTGTCTCTATTCATAGCATTGTCGGTAGATTTAATTTGTCATAATATATGTAGAGATGAATTCATGTTTGAGTTGAAGG TTGGTTTATTGCAAGTTTTCTTGTAGGACTTTTAAAAATCATTCAGTATTCAATCTCTTCGAATACCTACCATTACGAAT TTATTTAGGATTTAATTATAGGTAAGACTCTTCATTAATTCTTCTTATAGATTTGTTTATTGTGTGAGGATTAAATCCAA AATCTTACTATAATCTCTCTGAGTCTCATGAGAGTAAGAGAAGACCAGTCTCATACGAGAGCAAGTGTCAATTATTTTCT GGCTAGAATAACATTATTCTATTGAAGAACTTTGTGGACATGACCTGAACTAAAGAGATAAGAAAAATTATGGAAATTAC AAAACTAAACACATAAAATAGAGTCTGAACAGCACATCTCCCTTGTTTTCCGTCAAAAGAACAACTATGTTTTTGCCACG TAGTAATACTTTATTGCATTCAGTTACCATTTCTGGATAAGAGATTATATGCGAATTAGTCGAGTCCATATAGTACTTCC GAAGATTCTAGCGAACATATTATTATGCAATAATGAATTGGGGATCAAATGAATTTAATTGTAAGATCTGATTTGAATTA TGCGGGAAGTATAAAGTGGTGTGTATTTTTTTTTTTGAAAATGATTCATTCA
CDS sequence (LotjaGi1g1v0362400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGAAAACAGGGGAAGAAGGAGCAGAAGCAGCAGAACAAGGTGGTGAGGATCATGACAACGCCGTTTCGCGTTCT CGGAAAAGCCAAGGACATGTACGTCCGGAGCATCACCAAGTGCGGCCACAACATGAGCTACAGCAGCCAGGTCGACGCGG CGGGGCCATTCGCCGCTCTTCCCCGGAGCTACAGCACCACCACGGCGATGTCGAGTGAAAGCGAGGATTTCGCTGAGCTC ATGAGAGCAGCTTCAGCTAGAACCTTGATTAACAGAATTGATGTTGATTTGGTTCTCAAACAGCAGCAGGATCAGCAACT ACAACAGCAGCAGCTGCAACAACCACCGGTGAATGGTGGTTTGCCGAAGTCGGTGAGTGTTGGCATGGGGAGGATTGATG AGGATAAGCCTTTTGATTTTGGCGATGGTGGTGACCTTCCGGCTTCTTATCCAAGAAGTAGAAGCTATGCTGTTGGGAAG AATCCAAGGGGTGTTATGTAA
Protein sequence (LotjaGi1g1v0362400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRKQGKKEQKQQNKVVRIMTTPFRVLGKAKDMYVRSITKCGHNMSYSSQVDAAGPFAALPRSYSTTTAMSSESEDFAEL MRAASARTLINRIDVDLVLKQQQDQQLQQQQLQQPPVNGGLPKSVSVGMGRIDEDKPFDFGDGGDLPASYPRSRSYAVGK NPRGVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 5 | 165 | 161 | 2.8E-36 | ||
| PANTHER | 10 | 161 | 152 | 2.3E-54 | – | |
| PANTHER | 10 | 161 | 152 | 2.3E-54 | – | |
| MobiDBLite | 107 | 166 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0362400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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