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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0371500 |
| Transcript ID | LotjaGi1g1v0371500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Damaged dna-binding 2, putative isoform 1; TAIR: AT5G21940.1 hybrid signal transduction histidine kinase M-like protein; Swiss-Prot: sp|Q66KI6|PUM1_XENLA Pumilio homolog 1; TrEMBL-Plants: tr|A0A151SVC6|A0A151SVC6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0371500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84969331..84971334) extracted from Lotus japonicus Gifu genome v1.2.
GGTACATCACAATGTGCTTTTTGTGGATGTGTGTTGCTATCTATCTCTCTTAGCTGCTTCATCCAAATTTCTTTCTCTCT TTCTCTCTGACCAGTCTTTGGTCTGAATCGTGGTGGATAAGATGAGTATAACAGAAGCAACGGCGTTGTTTAAGGATGAA GAAGAGCAGTGCTCATCATCGTCGATCGGAAAGAACAGCGACCTGTCGTCGGAGACAGAGTCCGGCGACATGAAGAACGA GGCTCAAAGTTCTTATAAATGTAATGGACCTCTGGACATGATGGATTCCCTCCAACAAGTTCTTCCCATCAGGTATATAC CTTCTTTCAAAGTGTTGTATAATTTTGGTAAAATTCATTTCCATATAGAAAAACTTTTGGAAACTCGTTCGAAAACCACA GATAAAATGAGTGTAGAATGAAGTTTGTGTCTTAAAAAAGTGTAATAGATGGAGTTATGTTGTTTGAGACTCAAGTTGTG TTATTTGACAGGAGGGGCATCTCAAAATTCTATGATGGCAAGTCCAAGTCCTTCACGAGTCTGGTGGAGACTGTTTCTTC TTCCTCATCCGTGAAAGACATTGGAAAACCAGATGATGCTTACACCAGGAGGCGTAGAAATTTGATGGCTGTAAATCATG TATGGGAAAAGAATAGAAGCTTCCCTTTGAGTGGTGGAATTTTTAAGAGGACAATGAGTGCAAGCCGAAGCGCTTTAGCT CTTGCATTTGCCATCAACTATGATGACAGTAGCAGTAGTTGTACCAGTGAGGAATCAAATTCTAATCCAGTGTCGCCGCC GCCGCCTCTTCCACCGCTATATCCAAGAAGTAATGTATCGAGTGGGAGTTCAGGACTATCCTCTCCTGTGATCCACCAGA ATTTTTCTGGCTGGAGATCGTTCTCCTTGGTTGATCTTCAAAACTGTGCAACTGCTGCAACAGTAAAGATGCCTGGCTCT TCCATGATAAACAAAGCAGCTCATCTTTCATAGAAAATCTAACTCATGACCCAATTATTGTTTTGCTTCTTTGCTTGTAT GTTGTTTATCTAAATGAGCAGGGTTTTACAGAAGAAACCAGTGATAGATACTTAAATTTGATCTCTTAAGAGTAATGTCA ACCAGAAAAAGAGAGGTTCCCAGTCTTCAAATTGTCGGCAAAAACTGCAAAACACCCAAAATTAAAACCATGACCACATT CACACTCATCCAAAGATAGATGACTAGAGAAAGCTTGTTATAGGCTTATAGCTGATCTTCCATGTTTTCAAACAAAAGGG GTAACATCAGTGTTCTGTTCTGTACTAGGGAGATCTGACGTCGGAAACTGACAGAAAGTAAACCCTAGCAGAGTACTAAA AATATCACAAAAGGAATATTCTCATTAAATGTTCAAAAGGTACTTTTTACAAGGGGTTGACCTCTCCTTTTATAGAGGGA ATGATCATAACGTGGACTTTCTCTGTACTTGGGCCTGACAACCAGGGCCCAAGCCTCTATACATATAAGACAAAACTAAA GGAATCTTCCAGCTGGCGCGTGGACCCATCCAAAAGAAGGGCGGGCTTCGACGTTGTTCCACAAACCCCGCCAAGGCTGC TTTCGTTCATCTAAATGCTCGATTTGGGCGGGAATAAGGGATACTTATGTCCCGCCCAGTCCACATGCCCCCAAGACATG AGGCTTAAGTAAGTTGAGTCGAAATGTCTTTATACGTTGCTTCGTCGCCTGCCTTTATCATTTACCTCGTTCTTCTGATA ATTGTGTCGCCGTTCTTTCATTTGTGTAGGTGACATGAGACTTAGGTTCCTTGAGCCGAGACGTCCTTACAGTATATCGC CATTCTTTGTAGTCATGGGCCTATCGTCGCATTCTTGCCTATGAATTCTCGCCCTTTTCATGTTCCTTTATATGTCGCCA TTTTTTATCTTTGTCGATACATCGCCGTTATCACACCTGTCAATCACGTCTTTTCAACTGACGCACGTATCCTTCTTTTC CGGG
CDS sequence (LotjaGi1g1v0371500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATAACAGAAGCAACGGCGTTGTTTAAGGATGAAGAAGAGCAGTGCTCATCATCGTCGATCGGAAAGAACAGCGA CCTGTCGTCGGAGACAGAGTCCGGCGACATGAAGAACGAGGCTCAAAGTTCTTATAAATGTAATGGACCTCTGGACATGA TGGATTCCCTCCAACAAGTTCTTCCCATCAGGAGGGGCATCTCAAAATTCTATGATGGCAAGTCCAAGTCCTTCACGAGT CTGGTGGAGACTGTTTCTTCTTCCTCATCCGTGAAAGACATTGGAAAACCAGATGATGCTTACACCAGGAGGCGTAGAAA TTTGATGGCTGTAAATCATGTATGGGAAAAGAATAGAAGCTTCCCTTTGAGTGGTGGAATTTTTAAGAGGACAATGAGTG CAAGCCGAAGCGCTTTAGCTCTTGCATTTGCCATCAACTATGATGACAGTAGCAGTAGTTGTACCAGTGAGGAATCAAAT TCTAATCCAGTGTCGCCGCCGCCGCCTCTTCCACCGCTATATCCAAGAAGTAATGTATCGAGTGGGAGTTCAGGACTATC CTCTCCTGTGATCCACCAGAATTTTTCTGGCTGGAGATCGTTCTCCTTGGTTGATCTTCAAAACTGTGCAACTGCTGCAA CAGTAAAGATGCCTGGCTCTTCCATGATAAACAAAGCAGCTCATCTTTCATAG
Protein sequence (LotjaGi1g1v0371500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSITEATALFKDEEEQCSSSSIGKNSDLSSETESGDMKNEAQSSYKCNGPLDMMDSLQQVLPIRRGISKFYDGKSKSFTS LVETVSSSSSVKDIGKPDDAYTRRRRNLMAVNHVWEKNRSFPLSGGIFKRTMSASRSALALAFAINYDDSSSSCTSEESN SNPVSPPPPLPPLYPRSNVSSGSSGLSSPVIHQNFSGWRSFSLVDLQNCATAATVKMPGSSMINKAAHLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 13 | 46 | 34 | - | – | |
| PANTHER | 15 | 218 | 204 | 4.1E-69 | – | |
| PANTHER | 15 | 218 | 204 | 4.1E-69 | – | |
| MobiDBLite | 154 | 181 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0371500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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