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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0373300 |
| Transcript ID | LotjaGi1g1v0373300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G21280.2 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3; TrEMBL-Plants: tr|I1JU37|I1JU37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85151101..85157383) extracted from Lotus japonicus Gifu genome v1.2.
CGTAAACCCACAATCTTCACCTCCTTCATCTTCATCTTGTTCATCTTGTTCATCTTCACTTTATTCATCTTCATCCCCTT CTTTCATCATCTTCACCAAAAACTCCTCTCCTTCTTCATCAACCCATTTCCTCTTTTTTTCATTTTTTTTTTTCATATCA TCATCATCAACACTCTTCTTCTCCTTCTTCAACCAACCATGCCCAAACCTTCTCTCCCAGATTTAACACAAACCCAACTC AGATTTAACACCATCACCGCCTTCTCCTCTCACTAAATTCGGTAACCAGAAACACACATCATCTTTCAATTTCCCCCTCA ATATTTAACACCTTTAAAATATTCATCTTTCAATCTTGTGAGTTTTTTATGTTTCTCCGCCCGGATCTGTTCAACCCCTT CTTCAATGGCTGGTTTCCTCTCACTTCTCAGGCGCCTCTACCTCACCCTTTACCACTGGACCGTTTTCTTTGGATGGTAG TACATTCACTCACTCACTCACTGTTCAACTATGTTGCCCTTTTTCTCAAATTCTCTCTCTTAATTTGTGTAGGGTTCAAG TTCTGTATCAAAGCCTTTGATTTTCGCTCAAACTGCAGCTGTATTAGAGGCATTTGAGGGAAAAGTTTTAATTTTTATGA GCTATAGACATACCCTTTTGTTTGTTTTCTCTGAGTTGTGTTAAATTTCTTGTGGGAATTATCTCAAACTTCTCAAATAA ATGGTAAAGTTACAATTTTTTCAACTTTTCATGTTGCAGAACCAAGATATTGCCTAGCAAACCTTTAATCTTCTGCATAA TTGGACTGCTGGTGTGGTGTGTTCCCTCCCTGTGGTGGTGGTCTGAGTTTATTTTGTGTTTTTTGGCTTGCTTCCCTGTG TTGCAAAGATCTGATTTGTGTTGGACAAGGGTAGTTTCCCTATGCTTGTCTGTACAGATCTTATAAAAAATAAAGGAAAT GAAAATTGGTTGAAGAATTCTGGGTCTTGTACAGATCTGATTTGAGTTTTATTTTTTAGGATTAGAGTTTATTTTCTGGG TTTTGTTGAAGGTGATGGGTTTCTGAAGCATGATGGGGGGTGAGTTTTGGTGAAAATGATGGAAGGAGGGGGTGAAGAGG GTGGAAAAAGAAGAAAGGGACCAAAGTGAAAGAAAATTAGAAAGATAATGTTGACTTTTATTAATTGGGTTAACGGACGT TAGGGGATTTTAACGTCAGGGACTAATATGACTATTTTTTGCCACATCTGAGGACCGCGAGCCTAATAAAATTCATCCAG GGACGATTCTGAAGTCGGTGCGAACATCCAGGGACCAATGTGACTATTTACCCCCACAATATTTGTCAAACAACTTAAGC TTCAAGGAACCATACAGTAAAAATTTTGATCTATGTAAGTATTCTTAATAAAAGTAAAACTTCAGCTGAATTTCTAATAA ACTGCCTAAGCGTGTAAAGAGTTAATTAGTTTTTGAAGCTATATATCTACTTTGACTTATATGAGATAATTTATACCAAA TGGAAAATTGAACGAAAATAAAAAGAAAATCAGAGAATACAAAAGATAATGAAGTAGAAAAAAAATTATATATATAATGC TCCATCCTTCGTTTTTTGTAGATGACTCAACACTTCATAACTTAAAAAGTAGATTTTTTTTTTCATTATTCGTCCTCTAT GATAAATGAAGATGATTATTGGGGGCATTGTGTTCTAAAAGTGTATTTGATAGATTTTTCTTTTCTACCGCATTCCCCTT GTTGTTTATGCAAGCTAATATTATTGTTGTCCTGTTTCAGACTTTCAGTCTTGTTTCTTTTCTGAGTTTTATCTTTTTTT GGTACCCTGAAATAAAAGTATTATTGTATAAAAAAAATTCATAAACTTATATATAAAGAGTAAAATAGAAATTATAGAAC ACACTCTTCTTTCTTTCCACTTTTTCTTTCACATTCTCTTCAACTAGACAATCTAAAAAATTCTCACTTTTCACTCTCTT TCTTACCTTCTTCTTTTTTTTTTTCCTCACTTTTCTTTCACAACCAAACACACCATTAATATTTTTTTTTTAATATTTTC TCAATGACTGCTTTGCTTTTTACGCATCATATGCATTGCCACTTGATTTATCCATTTAGGTAAAAGTTGTATTTGATTCG TTATAGATATATATGTGAACTTTGACTTTTTTAAATGACAGGAAGACTACAACAAATGGAGCCTTATCCTGAGAAAAATA ATACAGGGAGACAAATGATTTAAAATCGTTTATCCTTTGTTCAGATTAACTGACCTTTTTTAGAGCCTGTGCTTTCTTAG AGGTTATGGGTGCCTTCATATTTAGTGACTAATATGTGTCTTATAGTTACTTGAATTATAAGTACAAAAATCACAATATA AGTAAGTAGGACACGCTAAATATTAGCCACTAGTTGTTAAGGGAATCAGTAACCTTTTAAAATGAAGAGTAAAAGAAAGG AACTCAATTTTTGAATAGTCTTGCTTTATCTTGAAATTTAGGAAAAATTTGGTGTCATTTTCCCTTTTGAATTTGTTTTC ATGATATATTTCTGTTATAACCAAGATAATCTTTATAGCGGACTAGCTTTTGGAGTAGAGTTAGACCACTCCAAAATTTT AATATGGTCTCGGAGCCTATCCTAGATCCGTTTAGTAGAGACTAGAGATCAACCATATATAGGTCACCCCGCGGATGTTT AGTCCTGCATATTCCACGCTTAAGAGTTAAGATATTCATCACCAGGCACAATGGAGTGTGTTAGAAATTCTACATTCACT AGAGATATGACCAAAGTAGTAATGAATAGAGCAATCCTCACCAACAAGTCCAAAATATATTTTCTTTTAATGGAATATAA GAATTCAAATGGTTATGCTGATTATGCTATACAAAACAATTAGAAGCACCTTATGATATAGCGTGTAGTGGAAACTCCAT AAATTTTCACATATGGGAGAGAAGTGATTTTGAGAGAAACTTTTGTAAGTGAGAACTGACTTGAAAGATTAGTGCATGTT TGGAGACACGGTAAAAAACCACAATAAAAGAAAAATCTCGGTGGACAGCCATAAAAGTTAAGAGAAGTTGCTTTTGTGCA CTGTGATGTTGGCTCACCGTGTATCCGCACATATGCATGTTAGGATACTTACTAGTTTTTACGTCGGAAGGAGAATTGGT TTTGGGAGAAGCTACTCCTAGTAGCTATTGTGGGAGCATTATTAATTCATGAGGGTTTGAATGTGAATCCTAATATGAGC ATGTCATTCTCTACCGTGAAATGAAGAAAATGATTGAAGTGAGATATGGCATGGTGAGACCAAGTGACCAACACTCAAGA ATCCATTTAAAGCAGTTAATAAAACGGTAACAGACGTAGTTTGCCAAAACAAGGAAAAGTCCAATAATTTTTTTTTAATA GACTAAAGGCCAAAATATTTTCAAGGCCCTAGGCTGTCCCCAACTATTTATAACGCTCATGAGGCCACAACCAGAAGGAC CAGGACTTTCTTCTGATCACTATCTGCCTCTGCATTGTGTACTTTGTCCCTCAAATTGTAGGAGAAAACCCCGTATGATT CCACCAACCTATCCCTTCCTTTCTGAATTCTATTTACACCAAAGTTGATATCAAACCACATATAGATGAGAGTTAGGTCC TCTTTTAAGCAAGAATCAAATAGAGGAATGGAATTGAATAAGCTTAGTAGAAACCTTGAAGAAGAGCCTCCTTTCTCTGG TGCTTACATGCGTAGCCTAGTGAAACAGCTCAGAACAAATGATCAAGGTTGTGTTGTGAATAGTGATGCTTCTTCCCATG GTCAAAATTTAACAAAACATGGCAAAATTGGGAAAGCTTGTCAGTCACAGCAATCCACACAACAACCCCAACAACATAAA AAACAAGTTAGGAGGAGACTCCACACTAGTAGGCCGTATCAGGAAAGGCTTCTGAATATGGCTGAGGCTAGGAGGGAGAT CGTCACCGCCTTGAAATTTCACAGGGCATCTATGAAAGAAGCAAGTGAGCAGCAACAACAGCAGCAGCTGCAGCAACAGC AGCAACAAAGGGCACCAGATTCCCCTCAGCTCTCCCAAAACCCGAGTTTCGATCAAGATGGAAGATATAAGTCCAGGAGA AATCCCAGAATTTATCCATCATGCAACACCAATTTTTCAAGCTACATGGGTGATTTTTCCTCTTACCCACCTGCCTTTGT TCCAAATTCTTACCCTGTGCCTGTTGCTTCCCCAATTGCACCACCACCCCTTATGGCTGAAAATCCCAATTTCATACTTC CAAATCAGCCTTTAGGATTGAACCTCAATTTTCATGATTTCAACAACTTAGATGCTACCATTCACCTTAGTAACACATCA CTATCTTCTAATTCCTTCTCTTCTGCAACCTCCTCTTCTCAGGAGGTTCCTTCAGTTGAATTGTCACAGGGAGATGGGAT CTCTTCACTGGTGAATTCTACTGAATCCAATGCTGCCAGCCAAGTTAATGCAGGCTTGGACGCAGCGATGGACGAGGAGG CTATAGCAGAGATCAGATCATTAGGAGAGCAATATCAAATGGAGTGGAATGACACAATGAATTTGGTCAAATCAGCTTGT TGGTTCAAGTTCTTGAGAAACATGGAACATGGGGCACCTGAAGCCAACACAGAAGGTGATGCATACCATAATTTTGACCA ACCTCTGGAGTTTCCAGCTTGGTTGAATGCAAATGAGAGCTGCTTAGATCAGTGCTCGGTGGAGTATTTCCAAAATTCTA CCTTACCTTGGTAAGTTCACACGTGTTTGAGTTTTTAAGGATGATTTTTGTCTATGAAGATTGAAGACCTTTTTGTTTGT ACCTCTTGTTAAGGAAAAGGAACAGAACAGTTTGCAGTTTCTTGGAATACTGTAACAACATAGGGAGCATAATTTAATGA GATCTCTCTGTTTTTTTTAGAAGATTGCTTTACTTTTATCATGCTTTTAAGTATCCTAATGATATGTAGAATGTCATGTG ACCTGTAGAATTTTTCAATCTCCATATTCATTTTTGAGTTTATATTTGATTATTTTGAAATAGTTGTTTCTTTTCTCTTC TTAATGCAACCTCGAGTAGATTGGAGGACTTCATGAATTATACTGCCTTTCGTGAAATCTTCAAAGGGTTAAGAACCCTT TAAAGGCAATCTTCTGTTAATGGTAAAGTTTGTTCTGTTTCATGTAAACAGAATTATGTTTCCTTCCGTCGAGGGTTTCC TACTTTCCTAGTGTGGGGCTGAGTGGCACAGTCAATATGTGCAGCTTGGCCCGGTACGACTATGTTTGGTTATTCATTGG CACTAGGGTAAATATCATTTCGAGATAAAAAGTGAACAAAAAACTTTTTTATAAATTCACGTTGCACTCAACTCATATCA AAACACATAGTTAATAGTTGGGTAACCCTTAATAGTTTTTATGCATGGCCTTGTTTTAAAGAACAAAAAATACTATCTTG TCCCCTTACTTTTACATGACTTTTAGTTTCAGAGGATTCATTTTTATTCCCTTGGCTTTTGACTGTTTAATGTAAATATG CTTAATACTAATCCTTTTCCTTTTTCACTCTTTTTTTGACAATGCATACACAGCTTGGACATTGGAGATATGGATGAAGA TTGGTTAGCTTGACAACTACAAGGATTGATTGTTTTGGTTAAATCAAATCCTTTGCTGCTTCTTTTTTTCTTTTGGGGTT TTGGGCACTTTCATTATAATTCCCCTATCCCCCCTCTATTTTAGGTCCATTTTTGGATGATAAATAAGGCTTGCAAATGT CAGAGAGACAGGCAGCATTAATATGAGTGATGAACATTTTTGCTTCCATTGCTCCTATGTTCGCAATATATTTTTGCAAT ATTAAGCAATTTGTGACTCAATTATTCAATCTTTTAAATTGCGACTGAAAAAATTAAATAATAAATAAAACAAGAGTGAA CGTGTGGTAGTTTTCTTCAGTCATTGCAGGCCTTTCTTTACTCCCCTAGGACCACCCTGTTCCAATTTTAAAAGCAAACG AAAAGAAAGTCAGAAAGAAGAACAAATTACAAAAGAAAAAAAAGGGGGGAATAAGGCAAAAGCAAGCAAGTATATGCTCT GAAAATAGAAAAATCATCGGTCATAATATATTACTTATATTAAATAAAACATAAATTATAGCTCAGACCATTGAGAAATT TAGAGTTAAGTAATATATCTTTAAATTTAATATATGATTGAAT
CDS sequence (LotjaGi1g1v0373300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGTTAGGTCCTCTTTTAAGCAAGAATCAAATAGAGGAATGGAATTGAATAAGCTTAGTAGAAACCTTGAAGAAGA GCCTCCTTTCTCTGGTGCTTACATGCGTAGCCTAGTGAAACAGCTCAGAACAAATGATCAAGGTTGTGTTGTGAATAGTG ATGCTTCTTCCCATGGTCAAAATTTAACAAAACATGGCAAAATTGGGAAAGCTTGTCAGTCACAGCAATCCACACAACAA CCCCAACAACATAAAAAACAAGTTAGGAGGAGACTCCACACTAGTAGGCCGTATCAGGAAAGGCTTCTGAATATGGCTGA GGCTAGGAGGGAGATCGTCACCGCCTTGAAATTTCACAGGGCATCTATGAAAGAAGCAAGTGAGCAGCAACAACAGCAGC AGCTGCAGCAACAGCAGCAACAAAGGGCACCAGATTCCCCTCAGCTCTCCCAAAACCCGAGTTTCGATCAAGATGGAAGA TATAAGTCCAGGAGAAATCCCAGAATTTATCCATCATGCAACACCAATTTTTCAAGCTACATGGGTGATTTTTCCTCTTA CCCACCTGCCTTTGTTCCAAATTCTTACCCTGTGCCTGTTGCTTCCCCAATTGCACCACCACCCCTTATGGCTGAAAATC CCAATTTCATACTTCCAAATCAGCCTTTAGGATTGAACCTCAATTTTCATGATTTCAACAACTTAGATGCTACCATTCAC CTTAGTAACACATCACTATCTTCTAATTCCTTCTCTTCTGCAACCTCCTCTTCTCAGGAGGTTCCTTCAGTTGAATTGTC ACAGGGAGATGGGATCTCTTCACTGGTGAATTCTACTGAATCCAATGCTGCCAGCCAAGTTAATGCAGGCTTGGACGCAG CGATGGACGAGGAGGCTATAGCAGAGATCAGATCATTAGGAGAGCAATATCAAATGGAGTGGAATGACACAATGAATTTG GTCAAATCAGCTTGTTGGTTCAAGTTCTTGAGAAACATGGAACATGGGGCACCTGAAGCCAACACAGAAGGTGATGCATA CCATAATTTTGACCAACCTCTGGAGTTTCCAGCTTGGTTGAATGCAAATGAGAGCTGCTTAGATCAGTGCTCGGTGGAGT ATTTCCAAAATTCTACCTTACCTTGCTTGGACATTGGAGATATGGATGAAGATTGGTTAGCTTGA
Protein sequence (LotjaGi1g1v0373300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVRSSFKQESNRGMELNKLSRNLEEEPPFSGAYMRSLVKQLRTNDQGCVVNSDASSHGQNLTKHGKIGKACQSQQSTQQ PQQHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKFHRASMKEASEQQQQQQLQQQQQQRAPDSPQLSQNPSFDQDGR YKSRRNPRIYPSCNTNFSSYMGDFSSYPPAFVPNSYPVPVASPIAPPPLMAENPNFILPNQPLGLNLNFHDFNNLDATIH LSNTSLSSNSFSSATSSSQEVPSVELSQGDGISSLVNSTESNAASQVNAGLDAAMDEEAIAEIRSLGEQYQMEWNDTMNL VKSACWFKFLRNMEHGAPEANTEGDAYHNFDQPLEFPAWLNANESCLDQCSVEYFQNSTLPCLDIGDMDEDWLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 23 | 394 | 372 | 2.6E-127 | – | |
| PANTHER | 23 | 394 | 372 | 2.6E-127 | – | |
| MobiDBLite | 52 | 83 | 32 | - | – | |
| MobiDBLite | 52 | 103 | 52 | - | – | |
| MobiDBLite | 122 | 170 | 49 | - | – | |
| Coils | 123 | 143 | 21 | - | – | |
| MobiDBLite | 125 | 157 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0373300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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