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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0375000 |
| Transcript ID | LotjaGi1g1v0375000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Constans; TAIR: AT5G24930.1 zinc finger CONSTANS-like protein; Swiss-Prot: sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4; TrEMBL-Plants: tr|K7QDB7|K7QDB7_PEA CONSTANS-like c; Found in the gene: LotjaGi1g1v0375000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85337406..85340683) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTTCGATCACATCACATATTTATATTTATAGTGAAATATTGTATAATAAGTTGTGGAATAATACCATGAAGATGGA AAAAAGATTACATGTGGCACTGCACTGGTCAGCAAGTCAGCCCTAGGGAAAAGAAACAAGATGTAATTAAGTGGGGTCCA TTTAGAAAAGCACAAGACACGCAAGGCGTTGGAATATGGCATGGCACCGCACCGCACCGCCCCGCCCCAACCATACCCTC CTTTCCCCTTTCGGCCTTTTCCACCAAAACTAATGTGAAGTTTTTAGCACCTTCAAAATTGAAATAAAATTTCTTTGAAT TTGAATAATTAACATAGAAAAAGAAAAAAAACGAATTCTACATGGCTCAAAAACGGTGGAGTATAAGGTGCAATAGTCAT CATGTCATGCACCGGTGCAATACATCTTTAGAACCACAAAAATGAAATATTCCTTTAAGATGCTATATCTGCAACCTATT GGACCTGTTATTTAACATTTGTAATTTATTATAATTTTAATTTGTCTTTTACATTAAAGCCTTTGTATTGCCTTACTCCT TCAACCTTTCTTAGACCTCCGGCCACCACCTCAGCGACCACCACCTCCGGCTCCGGCTACCAGTTTTGTTCACACGCTCC AAATCAATCGCAACAACAACAAACAACCCATTTTGATTTCAATGTCTTTCATCCCCGACCCCCATCGAGCAGATTTTGCA GTTCATAAAACAAGCTGGAAGGCTTCTCATTTCTCAACCTGATTATGAAAATCCATCAGTCCAAAACCCAAAAATGGCTT CTCCTTTTCCGGTGCGGTGGTCTCTGATTCAACTCCAGCCCGTGCCCAAACCAAAACCTGCGCCCAAGGACCCCAACCAA AATCTGACTCAAAATTCCATCCTTCAAGCGCCGCCAAGCTTTGTCTCCTTCTGCTTATCTGGGTTTTGATGAGCAGAAGG CGTGAGGGACATGGAGATGGGTTTGTTGGTCTCCAAATGAACCAGATCTGGGTCTGTATATCTCTCAGTGTATTTCGATT TCAAACCAGAGCTGATTTTGATGATGGCCCGAGGGGTGTGGTGACCGGAGGGGTGGAAGCGGGTAGGTTGCGTGTTGGAG GTTGTTGGTCGTTTGAATGGGAAGGTGGATGGAGAGGTGGCCAGAGGAGGTAGAGTTCTGGGTTTTTGGAGGGCCATCGC CATGAAGCGCCGGTGGTTGCAGCCTCAATCACCATCTGTCACCGGTAACTTCCATCGTTGTCATTCCCCGCCGCGCCGGA AGCCACCATCGGTCTGCAGGTGAGAAGGAAGAGACAGAGGAGGGAGAAAGGAGAGGTTGAGAGATAAGGGACAAGAATAT TTGTGTAAATTTCAATTATTTATTTATTTATTAGCAGGTCATTAAACCTGTTATAATAGGTCATTTTTGCTCTTGCATGA TGCAAGACCTAGAGTGCACTTGCACCCTAGAAGCCACCCTATAAAACTGTCAAATAGCTACAGAATTTTTTTAATTGTAA GATTGTGAGTTAACCCTAAGTAAGTTTGTAAGTGTGAGTAGTGTTTCGTCTCTTAAATATAAGATTGAGAGTTAAGTCCT CACCCACAAAAATAAAATGCACATTATAACAAATCAATTAATGTAAACACCCCCAACGAGAAAATTAGCCATTGCTTATA CCCCGAAACCAAGCCAAACATATATCTCTAAGAAATTTACAAGATTAGACAAAATTAATTAATTAATTTTTTTGGTTTAA TTTCAATTGACTCCAACATGCATTCTTACATCAATTCAAAAATTCACTGAGCTGTAAATTTTGCATTTGGGTAAGCCTGA TCCACGTGGCAGTCTCTCAATGGCCATTCATGAGATATCCGGGTCCCAGCAGATAGACTTGGACTATGACTTGGTGACTT GGCTTGTTTGTCCCCACCCACCTTTTCACGCAAACAATCAATCACTCTCTCACTCATTCACTCACGTTTCTTGTCATCTC CTCCATTCCACTCTCCAAACCATCAACATCACCATTCAGCAATGGCTTCCAAGCTCTGCGACTCATGCAAATCCGCCACC GCCACCCTCTACTGCCGCCCGGACTCCGCCTTCCTCTGCGCCCCCTGCGACTCCAAAGTCCACGCCGCCAACAAGCTCGC CTCCCGCCATCCACGTGTCACTCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTAGCCTCACATGCAAGGCCGATGCCGCCA ACCTCTGCCTCTCCTGCGACCATGACATCCACTCCGCCAACCCCCTCGCCGCCCGCCACGAACGTTCCCCCGTCACTCCC TTCTTCCACTCCCCCGCCGCCAACTTCCTCGACCACCAACACTTGTTCACAGATGCAAAACCAGAACCAGAAGCAGAAGC AGCAGAAGAAGAGGAAGAGGCTGAAGCTGCTTCCTGGTTGCTCCCGACTCCCAAGGAAGCAGATCTGTTCTCCGAATCAG ATCCACTCCATTTCCTAGATCTGGAACAGAAAATCAGCGACTGCGTTGTTCCGGTGAACAGCAATTTGAACCATATCCTT CCATCACAGTCACATTCACAATCGCAGAGTGTAAGAGCGATCTCATGATTCTGCTTAATATTTTTTGTGTGTGTGAGTGA TTGTTTGTGTGTTTGTTTGTTCAGGTATCGTCGTGTTCGATGGAGGTAGGGGTTGTACCGGAAGGGAGCACGAGCGCGAG CACGGTGGTGTCGGAGATATCGAACGGTGGCGGTGGTTACGAGAGAGCGGTGGATAGGGAAGCGAAGGTGATGAGGTACA GGGAGAAGAGGAAGAATAGAAGGTTCGAGAAGACGATACGTTACGCTTCGAGGAAAGCGTATGCGGAAAGCAGACCGAGG ATCAAAGGCAGGTTTGCAAAACGCTCTGATGATAACAACAATGCTGATCTTCCAGCTGCAGCTCTTGTTCCAACTTGTTG ATTCACTCACTCACTCACAACAACCCTTGCATTTGTGTATATGTAATTAAATTTCTTTCTTGTTTCCTTAATTTTCTCTC TTTGTCTTTCTTTTTGGTTGCTGTTTTGTTTTGTATATAGTTTCATGTTCTATTGCAGTTTAAGTTGTGCAAAATGTAAG TTGCTTGAATGAATGTTGTTGGTTTCTGTGGTAGCATTGCACTTCCTCTTATGGCTATGGCTGCTGTATCAAAATCTGGA ATGCTAAGTATGGTTTGTTTATTCACAAATCATATTTTTAAATCATATCTAGTCCTAAAAAGTGTTCCATTTCTTACA
CDS sequence (LotjaGi1g1v0375000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGCTCTGCGACTCATGCAAATCCGCCACCGCCACCCTCTACTGCCGCCCGGACTCCGCCTTCCTCTGCGC CCCCTGCGACTCCAAAGTCCACGCCGCCAACAAGCTCGCCTCCCGCCATCCACGTGTCACTCTCTGCGAAGTCTGCGAGC AAGCCCCCGCTAGCCTCACATGCAAGGCCGATGCCGCCAACCTCTGCCTCTCCTGCGACCATGACATCCACTCCGCCAAC CCCCTCGCCGCCCGCCACGAACGTTCCCCCGTCACTCCCTTCTTCCACTCCCCCGCCGCCAACTTCCTCGACCACCAACA CTTGTTCACAGATGCAAAACCAGAACCAGAAGCAGAAGCAGCAGAAGAAGAGGAAGAGGCTGAAGCTGCTTCCTGGTTGC TCCCGACTCCCAAGGAAGCAGATCTGTTCTCCGAATCAGATCCACTCCATTTCCTAGATCTGGAACAGAAAATCAGCGAC TGCGTTGTTCCGGTGAACAGCAATTTGAACCATATCCTTCCATCACAGTCACATTCACAATCGCAGAGTGTATCGTCGTG TTCGATGGAGGTAGGGGTTGTACCGGAAGGGAGCACGAGCGCGAGCACGGTGGTGTCGGAGATATCGAACGGTGGCGGTG GTTACGAGAGAGCGGTGGATAGGGAAGCGAAGGTGATGAGGTACAGGGAGAAGAGGAAGAATAGAAGGTTCGAGAAGACG ATACGTTACGCTTCGAGGAAAGCGTATGCGGAAAGCAGACCGAGGATCAAAGGCAGGTTTGCAAAACGCTCTGATGATAA CAACAATGCTGATCTTCCAGCTGCAGCTCTTGTTCCAACTTGTTGA
Protein sequence (LotjaGi1g1v0375000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCKADAANLCLSCDHDIHSAN PLAARHERSPVTPFFHSPAANFLDHQHLFTDAKPEPEAEAAEEEEEAEAASWLLPTPKEADLFSESDPLHFLDLEQKISD CVVPVNSNLNHILPSQSHSQSQSVSSCSMEVGVVPEGSTSASTVVSEISNGGGGYERAVDREAKVMRYREKRKNRRFEKT IRYASRKAYAESRPRIKGRFAKRSDDNNNADLPAAALVPTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 48 | 48 | 10.85 | ||
| PANTHER | 1 | 171 | 171 | 4.7E-103 | – | |
| PANTHER | 1 | 171 | 171 | 4.7E-103 | – | |
| SMART | 1 | 48 | 48 | 9.9E-15 | ||
| Pfam | 4 | 47 | 44 | 1.7E-6 | ||
| CDD | 5 | 48 | 44 | 1.49893E-8 | ||
| ProSiteProfiles | 44 | 91 | 48 | 10.352 | ||
| Pfam | 46 | 91 | 46 | 3.5E-6 | ||
| CDD | 47 | 91 | 45 | 1.52382E-6 | ||
| SMART | 49 | 91 | 43 | 2.1E-7 | ||
| PANTHER | 179 | 281 | 103 | 4.7E-103 | – | |
| PANTHER | 179 | 281 | 103 | 4.7E-103 | – | |
| Pfam | 221 | 263 | 43 | 8.7E-18 | ||
| ProSiteProfiles | 221 | 263 | 43 | 16.906 | ||
| MobiDBLite | 254 | 281 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0375000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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