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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0378100 |
| Transcript ID | LotjaGi1g1v0378100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G80960.3 F-box and Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9SAG4|FB93_ARATH F-box protein At1g80960; TrEMBL-Plants: tr|A0A072U9L4|A0A072U9L4_MEDTR FBD, F-box and LRR protein; Found in the gene: LotjaGi1g1v0378100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85769790..85772284) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGGATTTCATCAATAATCTTCCTGACTCCCTTCTGATTGTTATCGTTTCTCTCCTTCCGATCACAGAACGTGTGAGA ACAAGTGTTCTTTCTGAACGATGGAAAACTATCTGGAAGGAGTCTTCCCACATCAGCCTCGATCAAAGAAAAATGTTGAA GCATTTAATCGAGAATTATCTTCAAGATACAAGCCCGCGAAAACGTCTTGCAAAAGCCATAGGTCGTAAGGTATAAATTA ATTTGTTGATATTCACTTAGTACATTTTTTTATGATCATTAGGGTATGGTATCATATCCTATCACATCATCAAGTCTAGA GTTTGACTACTTAAACTACTCAGTGAATGGTTTGAAATTTCATAGTAAGATAAATTAGTCTGCAACATAAAATATTTCTT TCTCAAAGGAGGTGCAAGATATATAATATATATAATTAATGCATCTTCACTTCATATTTTTTCAAATGGGTAATGACAGG AACCTCCGATAAAGGAAGAAGATGTGGATGCAATTGCTGAAGCAGCCATGTTAATCAACATGGTCGTGAATGCTCACTTT GGCTTGAAAAGTTGTAGGATTCGACATTTGCCAGAGAGCTGCATTAGTGGCGAAGTTGAGGGATGGATGAGGAAGCTTTT GGAGAAAGGGGTGAAACAAATTTCAATGGAGCGGGAACCTGATTGTGCGATTTCCCAACAACAACTAAATCAATTTCAAA TTTATATCAGGGGGATTATCAATTTACCATTTGATATTTTCTCAGGTTTTGAGGTTCTTGAGTTGAAGAACTATTATCTT AAAATTTCACCCACTAGAAATCATCCCCAATTTTTGAAAACCCTAACCCTTAATGACGTGGGTCTGTCGCCAAATGGTTT ACAGAAGATTCTTTCTCATTGTTTATCTCTTGAAAACCTAACCCTAGAGAAATGTCATGTCGAGAATGTTATGATCCAGA GTCCAAGTCTCAAATTTTTTAAAATATGTGACATGTTTGTATCAAAGATTGCAGTTTTTGCAGTTAACATTGAGGTCATT GTGATTGATACGGTTTTTTGCAATGCTAAGAAACTGATTTTTAAGACTCCGACACTTCGGGTTCTATATTCTTACTATGA TATGAAGAAGGAAGGGCTTCATTTTTTCCCAATTCGAGACTATCTTTTGACTGCAAAGGAGATCCTAGAAGTTTCAAGTA GAAATCTGGTACGTGTTTTACTCTTTATTTGGTACACATGATATTTTAGTGATGTGTTGTATACATATGGTTACATTTGT ATGAATAGGGTTATAGTCCAATATTTGAGATTATAGTTCCCTCAAGATTAATCTAATTCAATTACACACTATATGAGTTA TCCCTATTTAGTTGAAATGTTGTTGATACAATTTCTAATTTCAAACCTTAAGTTACACTAATTTATTTTAGAATTTTTGT TTAAACCCTTACCTTTATTTCATAGTGAAGAAAAGTTAAACAAAATTTTCATAGTTTTTAACACAAAATTTAAATATTGG TACATGTTAATTATATTACGAGTGACACTAGTAAAATTTCCAAGAACAACCCTTTTGAATCTATTTAAATTGTACGAAAG TTCTAACTCTGATTTTTAGATCATGTAAAATTACTATTTATATTGATATTTTTGTCCATTTCTTTTATATATTTATTTTA TTATTATCTCAGATCCTTCAAGATTCAAGACTCGTCTGTGTATTTGAGAATCTGCTAACTCTCAAGATCAATCTAGATTT GAAAAATATAAAAAATGGCACAATTCTCTCATCAGCCCTTAAAACATGTCATAAGTTGGAGAATCTTGAAATTAATAGTC AGGTACAGACATGATTACTTCATCCACATTCTTGTTAAATTTCTATTTATGGGTAAATGCATTGCATTTCATAGTTCTCC CCTTATATAGGTCGATGATGGTGGTAGTGAGACGTATAATCAAAACGAAGATGATTGTCTACCTTTCAACAAACATTTAT TTTGGCAAAGGGAGTTCTCTCAGAATATTGGTCAACATCTAAAGACCCTCAGCATAAAGGGATTTATGGGTAGAGATTTT GAAGTGGAATTTGTAAAATACATAATCACAAATGTAGAAACGATGGAGAAGATTACAATTTGGTTTGTTGATGGTTGTAC ATGGACTGAAGCCACAACAACTTTGTGCTTGCTAGCCTTTCCAAAGGCCTCTACCAAATTATCCATTACTCTTAAACCTG AGGTGAAGTACTTAAGAAAATTTGGTGGGAGCTTTCAAAAGTGGGTCTCAACTCTGAAAGACTAGAAATTTGGCGGCGTT TTTCTTGTATTGGGAAAGGACAAAATTGGAGGGTGGTATATTAGCTTTGTGTCTGGGTCGATTGGTTAGAAAGGTTTAAT TAGCTTTTGGGTTTGTGGACTTTGGTATTTTTGTTTGATGTAAGCTTGTTTTGGCTTTTGGCTTGGAAATTTGGTTGATT AATATATGAATACTC
CDS sequence (LotjaGi1g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAGCATTTAATCGAGAATTATCTTCAAGATACAAGCCCGCGAAAACGTCTTGCAAAAGCCATAGGTCGTAAGGA ACCTCCGATAAAGGAAGAAGATGTGGATGCAATTGCTGAAGCAGCCATGTTAATCAACATGGTCGTGAATGCTCACTTTG GCTTGAAAAGTTGTAGGATTCGACATTTGCCAGAGAGCTGCATTAGTGGCGAAGTTGAGGGATGGATGAGGAAGCTTTTG GAGAAAGGGGTGAAACAAATTTCAATGGAGCGGGAACCTGATTGTGCGATTTCCCAACAACAACTAAATCAATTTCAAAT TTATATCAGGGGGATTATCAATTTACCATTTGATATTTTCTCAGGTTTTGAGGTTCTTGAGTTGAAGAACTATTATCTTA AAATTTCACCCACTAGAAATCATCCCCAATTTTTGAAAACCCTAACCCTTAATGACGTGGGTCTGTCGCCAAATGGTTTA CAGAAGATTCTTTCTCATTGTTTATCTCTTGAAAACCTAACCCTAGAGAAATGTCATGTCGAGAATGTTATGATCCAGAG TCCAAGTCTCAAATTTTTTAAAATATGTGACATGTTTGTATCAAAGATTGCAGTTTTTGCAGTTAACATTGAGGTCATTG TGATTGATACGGTTTTTTGCAATGCTAAGAAACTGATTTTTAAGACTCCGACACTTCGGGTTCTATATTCTTACTATGAT ATGAAGAAGGAAGGGCTTCATTTTTTCCCAATTCGAGACTATCTTTTGACTGCAAAGGAGATCCTAGAAGTTTCAAGTAG AAATCTGATCCTTCAAGATTCAAGACTCGTCTGTGTATTTGAGAATCTGCTAACTCTCAAGATCAATCTAGATTTGAAAA ATATAAAAAATGGCACAATTCTCTCATCAGCCCTTAAAACATGTCATAAGTTGGAGAATCTTGAAATTAATAGTCAGGTC GATGATGGTGGTAGTGAGACGTATAATCAAAACGAAGATGATTGTCTACCTTTCAACAAACATTTATTTTGGCAAAGGGA GTTCTCTCAGAATATTGGTCAACATCTAAAGACCCTCAGCATAAAGGGATTTATGGGTAGAGATTTTGAAGTGGAATTTG TAAAATACATAATCACAAATGTAGAAACGATGGAGAAGATTACAATTTGGTTTGTTGATGGTTGTACATGGACTGAAGCC ACAACAACTTTGTGCTTGCTAGCCTTTCCAAAGGCCTCTACCAAATTATCCATTACTCTTAAACCTGAGGTGAAGTACTT AAGAAAATTTGGTGGGAGCTTTCAAAAGTGGGTCTCAACTCTGAAAGACTAG
Protein sequence (LotjaGi1g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKHLIENYLQDTSPRKRLAKAIGRKEPPIKEEDVDAIAEAAMLINMVVNAHFGLKSCRIRHLPESCISGEVEGWMRKLL EKGVKQISMEREPDCAISQQQLNQFQIYIRGIINLPFDIFSGFEVLELKNYYLKISPTRNHPQFLKTLTLNDVGLSPNGL QKILSHCLSLENLTLEKCHVENVMIQSPSLKFFKICDMFVSKIAVFAVNIEVIVIDTVFCNAKKLIFKTPTLRVLYSYYD MKKEGLHFFPIRDYLLTAKEILEVSSRNLILQDSRLVCVFENLLTLKINLDLKNIKNGTILSSALKTCHKLENLEINSQV DDGGSETYNQNEDDCLPFNKHLFWQREFSQNIGQHLKTLSIKGFMGRDFEVEFVKYIITNVETMEKITIWFVDGCTWTEA TTTLCLLAFPKASTKLSITLKPEVKYLRKFGGSFQKWVSTLKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 437 | 408 | 3.0E-37 | – | |
| PANTHER | 30 | 437 | 408 | 3.0E-37 | – | |
| SUPERFAMILY | 110 | 369 | 260 | 1.92E-6 | – | |
| Gene3D | 116 | 420 | 305 | 2.3E-8 | ||
| Pfam | 354 | 389 | 36 | 2.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0378100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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