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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0379300 |
| Transcript ID | LotjaGi1g1v0379300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF868 family protein; TAIR: AT5G11000.1 hypothetical protein (DUF868); Swiss-Prot: sp|A8FDB9|DXR_BACP2 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TrEMBL-Plants: tr|A0A1J7GQ81|A0A1J7GQ81_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86029336..86031371) extracted from Lotus japonicus Gifu genome v1.2.
TTGAGATTTGTGTTCATGATTTGTTGGTTTTTTTTTAACAAAATAACATGAAGTTTCTTTGCAGGACAGTGGAAGGTTGT AAACATTCAGATTGGTCCAATTAGTGATTTTACACAACTTTCCCACTCTTTTTACAGGCAATGCAAGGGTCAGAGTCAGA CACAGTCTTCTTCCCTTTGTGTGTGCCTGCCTCCCCCATCTCCATTCATTCATAAATAAAAGCAAACCCCTTTCCACTTT CCAATTCAATTCAACTTTCTCTTTTCATTCCAATTCACTTCAAAACCAAAACACCACACGCAACTTCAATTCAATTCACA CCAAAACACATTAACAAAAATGACATCCTCATTCCCTTCTTGCTTCCGCCCTTCCCCAACCACTGACCACTCTCCTCCTC CTCTTCCGCCGCCGTCACCACCTTCCACCAACCCCAACCTCTCCACCTATCTCTACAACACCGACATAGGCCCAGTTTCC CTCACCTGGTCACGCTCCATCATGGGTCGCTCCCTCCACGTTCACCTCCACCACCACCCCTTCGATTCCCCTCTCCCTCT CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCGCCTCCACATCAAGCCCTTCATCTTCTGGAAAAAGCACG GCACCAAGAAGCTCTCCCCCAACACCCACCTCTTCTGGAACCTCTCCAAGGCAAAATTCGGGTCAGGACCCGAACCCAAC TCCGGCTTCTACGTCGCGGTGGTCGTCGACAGCGAGATGACCCTCCTCGTCGGCGATTCCAGTAGAGACGCCTACACCAA ATCCAAAGCCCACGAACCAAAAACCGGTCAATCGCTTCTGCTGAAGAAGGAACACGTCCTCGCCAACAAAATCTACACCA CCAGAGCTAAATTCGGTGGTAGAATGAGAGAGATTCAGATCGATTGTGACAGTTCAAGGCTCTGTTTCAGCGTCGACGGT GAGAAAGTGATGCAGATTAAGCGGTTGAAGTGGAAATTCAGAGGGAACGAGAGAGTGGAAGTTGATGGGGTTCCGATTCA GATCTCATGGGACGTTTACAATTGGCTGTTTCAGAAGGATAACAGTGATGGGCACGCCATTTTCATGTTCAAATTCGAGG AGGAAGAAGAAGATGAAGAGGATCAGCGAGGGAAAGAGAGGAATCTGGTGAATTTGTGGACGCACCAGAACTTGAATTTG GGGGTTTCTGAATGGGGGAAAGTTGGGTCGTCTTCGTCAGCGTCAATGGCGTCTTCCGGTGGGTCTTTTGGCGGCAGCTC CTCCGTGATGGAATGGTCCAGTGTGGAGGAGAATGAGTTGGTTGTTCCCATTGGGTTTTCTTTGCTTGTTTATGCTTGGA AACGATGAACACTGTTTTCTTTTACTTTTTCATTCATGTTGTATGATTAATTACTAGTGACATGCAACCGTTTTTTGAAC GGGTGACGACATTCGTTAAAATTAGGTCGGCGATTAATTAGTGAGTGCTGCTAACCCCATACTAACCCATTTGTTTGGTG AACATAGAGATTAAATAAATCTAGTTTAGGAAGAAGATGAGTTGATAGCAATAGTAGTTGGAGAGAGTAGTTTGAGATCT TTGTAATTCTTTGATTTCCTTTTTCTTTCCACTTGCTAGATGTGGAGCTTATTGGAGTGTGATGTAGTATAAACTCAATT TGCAGTTATCATGTCTTGAAAATCATATTGATTAATGCATAGTTGAACAAATTAAATTACTTCCACTTTAGCTATTATTT TAGTTTTATGATTACTATTGTTCTAGTATTACAGTTGGATTGGGATTGGAATTGTAGTTGTGGGGTGCACGACCAAAGGA CATGAGAGGTAGGACATATGACCTAGTCTTTTGTGTGATACATTTGCAAATGGCAGCTAAGGTTGAAGGTGATGATAGTC CTCTTTTGTGACCGATACTAACCGCCAAGTTGGTTGACCTAGTCCACCATTGAACCAATTGTTGAATTCAATGGAACGGT TAATATTAGTTGACAATTCAACCAAATGCTATGCTG
CDS sequence (LotjaGi1g1v0379300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATCCTCATTCCCTTCTTGCTTCCGCCCTTCCCCAACCACTGACCACTCTCCTCCTCCTCTTCCGCCGCCGTCACC ACCTTCCACCAACCCCAACCTCTCCACCTATCTCTACAACACCGACATAGGCCCAGTTTCCCTCACCTGGTCACGCTCCA TCATGGGTCGCTCCCTCCACGTTCACCTCCACCACCACCCCTTCGATTCCCCTCTCCCTCTCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCTCCTCCTTCCGCCTCCACATCAAGCCCTTCATCTTCTGGAAAAAGCACGGCACCAAGAAGCTCTCCCC CAACACCCACCTCTTCTGGAACCTCTCCAAGGCAAAATTCGGGTCAGGACCCGAACCCAACTCCGGCTTCTACGTCGCGG TGGTCGTCGACAGCGAGATGACCCTCCTCGTCGGCGATTCCAGTAGAGACGCCTACACCAAATCCAAAGCCCACGAACCA AAAACCGGTCAATCGCTTCTGCTGAAGAAGGAACACGTCCTCGCCAACAAAATCTACACCACCAGAGCTAAATTCGGTGG TAGAATGAGAGAGATTCAGATCGATTGTGACAGTTCAAGGCTCTGTTTCAGCGTCGACGGTGAGAAAGTGATGCAGATTA AGCGGTTGAAGTGGAAATTCAGAGGGAACGAGAGAGTGGAAGTTGATGGGGTTCCGATTCAGATCTCATGGGACGTTTAC AATTGGCTGTTTCAGAAGGATAACAGTGATGGGCACGCCATTTTCATGTTCAAATTCGAGGAGGAAGAAGAAGATGAAGA GGATCAGCGAGGGAAAGAGAGGAATCTGGTGAATTTGTGGACGCACCAGAACTTGAATTTGGGGGTTTCTGAATGGGGGA AAGTTGGGTCGTCTTCGTCAGCGTCAATGGCGTCTTCCGGTGGGTCTTTTGGCGGCAGCTCCTCCGTGATGGAATGGTCC AGTGTGGAGGAGAATGAGTTGGTTGTTCCCATTGGGTTTTCTTTGCTTGTTTATGCTTGGAAACGATGA
Protein sequence (LotjaGi1g1v0379300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSSFPSCFRPSPTTDHSPPPLPPPSPPSTNPNLSTYLYNTDIGPVSLTWSRSIMGRSLHVHLHHHPFDSPLPLSSSSSS SSSSSSFRLHIKPFIFWKKHGTKKLSPNTHLFWNLSKAKFGSGPEPNSGFYVAVVVDSEMTLLVGDSSRDAYTKSKAHEP KTGQSLLLKKEHVLANKIYTTRAKFGGRMREIQIDCDSSRLCFSVDGEKVMQIKRLKWKFRGNERVEVDGVPIQISWDVY NWLFQKDNSDGHAIFMFKFEEEEEDEEDQRGKERNLVNLWTHQNLNLGVSEWGKVGSSSSASMASSGGSFGGSSSVMEWS SVEENELVVPIGFSLLVYAWKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 5 | 342 | 338 | 1.5E-120 | – | |
| PANTHER | 5 | 342 | 338 | 1.5E-120 | ||
| MobiDBLite | 13 | 31 | 19 | - | – | |
| Pfam | 32 | 341 | 310 | 9.7E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0379300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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