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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0389100 |
| Transcript ID | LotjaGi1g1v0389100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT5G11300.1 mitotic-like cyclin 3B from Arabidopsi; Swiss-Prot: sp|Q147G5|CCA22_ARATH Cyclin-A2-2; TrEMBL-Plants: tr|Q39878|Q39878_SOYBN Mitotic cyclin a2-type; Found in the gene: LotjaGi1g1v0389100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87260854..87266878) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGTCTATGATGTTTGGTCTTAATGGGACATTGAGGAAAGAAAGAAAAAAAAACAGAATTGGTGGGTGGAAAATTG CAAGATTTTTCAAGTTTTGAACTGTTGTTTCATCCCGCTCACTCACGCTCCTCTCTCTCTGCTGCTGCTTATATCACCAC TCACCACCCACTCTCACTTTCGGACCACACTCTCTCTTCAACGTAAGCTCACCTCTCTCTCTCAAACGCTCTCGTTTTCT TCCTTTTTCTCTTTTTCTTTCTGAAATTCACTCATTCAGTGTGTCTTCTTTACTGGGTGGAGCTTGATTTCGTGATTTTT ACCCAATCATTTTGCGTTTTTCTCTGTTTTTCGTTAGTGTATAGATCTGACATGGAGGTGCATTTCTCCTAATTCAGCTC AATTCCAAAGCTTAAAAATTGTTACTGTAAGCTTATGCACTTTGCAGTGAATGCTGAATTGAATTGTGGGAATTTTGCTA GTTTTTGAATTGGAATTGGAACAGATATGATCTTTCTTGCTGTTAGAAAAATGGGTTTTTGTTGTTTTGATTTTTTTTTT TTTTTGTGATTGATTGATTGTTGTGAAATCTTCTCATGTATGGTTTTGCGTTTGGCAGCTGAAAAGTTTTTTATTTTTTT CTGTTTATTCAAATTCAATCCCTGATGAAAATTGTGACAGGGGAAAGTTAAAAAGAAGAACAAGATGTGGGGTATGTGTC TGCAAAGTGTGGGTGTGTAAAGATCATGAAAACAATTCAATTTTTTTTTCTGGTTTGAAAAAGTTGCTTGATGTCTGATT TGTCTTAATCAAAAGTATATACATCTTATTCATGATGTGATAAAGTGGCATAATGTCAAAACAATTGGTTTGAAATCAAA GAATTTAGGTTATGTTTCGAAATCCATTGGTAATCGTGCAAACGGACACTAGCACTTATTCGAAATAAAAAGTGCTTATA GATTGAGATGAAAATTCGTTCACGTCATACTCAAATGGTATCCGAACACGGACTAATTCATTTTCTGGTTGAAATCAATT GGCTTGAAATCATATATCAAATCAAAACAAATGGTTTCAATAAGTTGCTTGATGTCTGATATATCTTGTTCATTTTCTGG TTTGAAGGGTATAGCTGAACATAATGATGTTGTTATCATAACATTCGGCCATTGTTTTTGTTGGCTTGTTTGTATCTTTG TCACTGTTATTGTTATTGGTGTTGTCTTACTGTAATTTGGTCTTTGAAGGACAGTTGTGTGGCTGTATGAGCAAGATCTT GTTTTGAGGCAATTGGGTTGCTCTTCTTCAAGGCAAATGAATAAAGGGAATGCATCTTGTGCCAAAGAGGAAGAGCATCC ACTCCGAATCACGAGGGCGAGGGCTAGAGCCTTGGGAGGGATTCCTCCCTACTCAAGACCGTCCTTTAAGAATGACCACA AGAAAGCAAGTTCCAAAAGAGCAGCTTCTGTTAACAAAGCTTGTGCAGTGGTTCCTGATGCTCGTCAGCAGAAGAGAAAG GCAGTGCTCACAGATGTAACCAACATCAGCAAAAAGCCACATGATATGTGTATTCAAGCACCAAAATTTCAAGTAAGCAT GAAAAACTAACTCTGCTATCCAATGTAGATATCAAATTGTCAACATTTTATAATTCTAGCAATAAAGGAAGCAAAAATTT GCTGAGTCTTTCTCATTTGAAAAAGTAAAAACATTTGATCCACTGTCCTTTATTTGCTCGCAACAAAATTCCATTACACG ACTATAAAACTTGTAATGTTGTATGAGACTAAATGCTCTTAATGATGTTGAGAGGAGAGTTTTACAATAGATGAGTGAAG AGACAAGTCCTAATAGGATTAGGAACAAAACACCTAGTGGTTAAATGTTGTTTTTTTTATTGTTATTGTTATTTTTATTG TTTGGTGATGCCTGTTGGCTCTCTATCACGTAGGGAAGGGGAGTTTACAAGAAGAAAAACACAAAGCTAGCTTCAAATGT CTCCATTGAAGCTTCATCATCACAAGAGCATGTTAAAGCAAAGTTAGCAGAAGAATCATCCACAATAAAGATGGTAGAGT CAGCCGGCTCATTTGCAGAAGCAACTTTAGATGACAAAGAGCCAGCAGCCAATTGTTTGTCCAACAACATTAAAGAACAT GTTATAGCAGGCTCCACGCTTACAATGCAAGAATCTATGCAATCTGATGAACTCCTTAGCTCTCCAAACACAGGTTTTTC AATAATCTCATATCTGATTACTAGTATGCAACATGGTTTAGGTGTATAACACCACTTATAAATTACTAAGGCCACATTTG GATGAGCTTATTTGAGCTTATCTTATATTATAAGCTCATATTCTAATGTTTGGATAAGCTTATAAAAATAGTTTTATGAC CTATCTATATGCTGTTTTGAGCCTATTCTGGGTTTATTTGTAAACGCTTATGCGATAAACGCTTATTGCCATCAGCACTT AATTAAATTATTTACCCAAACGAGCCCTAACGGTACAAATAAAATTTATGCAACTCTCTGGTTGAACATACAAAGAACCA AATGCTATAGGCTTTAACATGGAAATCATTGAGAGTGCTCAAAATTATGTTTGTTGCTTATTTAGCTTAACTGGCAAACC ATATTTCTTATGATCAGTGGTTGGAAAATGCAAATATTTTTGGATAATAAGAACTTTCAAGTTCTTGGAGTTGCAATGTT TTTTTATTGCCGTCTTGATAAGACATAAAAAAGAAGTTACAAGCAAGCCATATTTTCACTAGAATGATAATACCTTCGAA ATTTGGATCCTCCAACTGCTTTTGATATTGTCTTGATTGGATTGTGCAGATATGGATATAAATTGTGAGAATCCGGGAGC CTCAGATATCCCAGCCATTGTGGATATTGATTCAGAGTTAATAGACCCTCTAGTTTGGAGCTCCTATGCCCCTGACATAT ACAACATTACTCGAGTCAGAGAGGTTGGTGATGTAATAATGTGATTTATTCTTGTGTGTTGCTAGGATAGTATTTGTTTA CGTAACTGAGTGATTACAATTTCCAATTTCCATAGGTTCTTTTAAAACAATATTATGATGTAAACCTCAACTGCTTCTGC TTTCTCCACTATTGTCACAGTCTAGCTGCACCATAACACTATAATAAGGCTCTTTTATTTTCAGAGCATAACTTCCACTG CAAGAAAGTATTATAGTATAGCAATGAGAATGTTTTATTTAGCAACATTTAATTTTACTCTAATATTAATTTTTCTGCTT AAAAGAACCTCACAATTACAAGGCAATGCTGTTTTTGTGCTCAGAAAGAAAAGCGAAGGATAATTAGGTTCACAAAAAAA AAAACTGATAGTAAGTTTTGTTGAAATTTCTACAGCTTGAAAGGAGGCCATTAACCAACTACATGGATGAGTTACAGAAA GATATTTGTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTTGAGGTTAGTCTCATGGCATTGGCATCATGTACATT AATACATTATTTTTGAATGATAGGATCCATAAAATGTACTGGATATTTTCAAATAGACAATCTCTAATTGCTGTCTGCTG ACGTTAGCCATCAAGCTTTCTTTGTAGGTTGGCTGAAAGTTTCCTATATCCTGTTTCAGGTTTCTGAGGAATATAAGCTG GTTCCAGACACTCTTTACCTGACAGTGAACCTCATCGATCGGTTTCTCTCAACAAGATTGATTCAGAAACAAAGGCTCCA GCTTCTTGGTGTTACTTGCATGCTGATTGCATCGTAAGTAGCATACTTTGTAATTGACCTAGTTATGATAAGTTCCCCAA GCTGAAGTTAAGACTCCTTGATGCTTCTTTTTGAACTCTGGTTTGGGAATATTAAGGCTTCTAAAATGATATAGCTGATA ATGAAAATCAGTTTTCCATTTACAGTCTAGTGTGATGATGAAAATGATTATTTATTAGTCCCTTAAATAGTTATTTTACT TTTGTCTTGGACTTGTGTTTGTTCATAGTTTTTCATATTTTTCAAAAATGTAATCTTATTCTGACTATCCTCTGTAGACA GTAGAGTTTTGTTAACAAGCAAGTAATGAAACTTTGTCTTGACATTTACAAATTTGTAATAAACTTCAAATTTTGTTCAC AAATCTTTCGATCTTGAATGCATGAGGTGATGATGTAAGTTATCATATCTATCTTTTCTATATCACTCTGTCTAAGATGT GCTTCTTTTCTTTCATGGTTTTAAGAAAGTATGAAGAGATTTGTGCTCCTCGAGTAGAGGAGTTTTGCTTCATCACAGAC AATACATACACAAGGGAAGAGGTATAGTATTCGGTAGCACGATTGGGACCTTCATCCTTTTCCAAGTTGTATACAATACA CGATGATGATATATTAAACACTTAACCAGTGTCACTTTTTGACAGGTATTGAAGATGGAGAGTGAAGTTCTAACACTTTT GCAATTTCAGTTATCTTTCCCCACAACTAAAACATTTCTCAGGTACATACACTGTCTTCATTAATATTCACGTTTTGTTG AAAAATGCCACTTAAGTAATACTTCATTGGACTATGATGATCTTTTCATGTCTTTCAGGAGATTCATCCAAGCTGCACAA ACTTCTTACAAGGTACTACCCTTAATTTAACTTCAGAAGGTAAATTTTTGTATTGACAGAAAAAAAATGCATAAGAATTG GTTAAATTTTATCTTGTTATGCAGGCCCCTCGTGTTGAACTGGAATTCCTAGCAAATTATTTAGCAGAGCTTGGTCTTGT TGAGTACAGCTTCTTGGAATTTCTACCTTCCATGGTGGCTGCTTCTGCTGTATTCCTTGCAAAATGGACCCTCGACCATT TAGAACATCCATGGGTATGAACCGTTGAGTTGACTACATATTTACCTTTGTTTAGAGGTATATAAATTCAAAATGTGTCG CCTGCATTTGTTTTCAGAATCCAACTCTGGAGCATTATACAAACTACAAATCTTCAGAGCTCAAAACTGTTGTTCTTGCA CTCCAAGATCTCCAACTTAATACCAAAGGCTGTCCACTGAATGCTATACGTGAGAAATATAAATACCAGAAGGTTAGAAA TGTGAACATTATATAAAAAGCTCATCCGTTTTTCGGTTAACCAATGTCATGTTTAGAATACTTTAAATTTGTATTAATTT TTAGGAAAATTGGTTGTCAAAGAAGTTTTCACTCACCTTTCTTCAACTTGGTGCATGTTTGGTTTCACAATTTACACAAA ATCCAAAACATATTTACTCAGAAGCTATGATTTGTAACTCCTAACCAAATTTGATTATAGAGCATTGCATCGTGGAACTA AACATGCTATAATTCTTCGTCTGATTAAAGTATATACCAGCAAAATAATATGCCTGCCCTTAATAGCTTTTCTGAAAAAG GTATAGACATAATTACATGACAGTGATTTTTGCTTCTTTTGACAGTTCAATTGTGTGGCAAATCTGTCTCCAAAACCGGT GCAGTCACTCTTCCAGGTTCAAGTGTAAATTATGCATATCTAAGGGATGATTTCGGAATTTCTGGTACAGTGATGGTGGT GTTATCATCCGTGGTGATATATTTAACCCTCTTGTTATTAATCTCAACTTATTAATTGTGAAGTTTGTAAAATGAAAGAT AGTTTCAAATTTTGGTTCGTCGAGATCTCCTTGTAACGTGAAACCATTGCATGATGATAAAGTTCAACCAGGGCGTTGAA GTGCCTAACATCAAGTTGACTTCATTTAAGGTTGCCATTATGCAACAAAGCCGTCTAGCTGCTTATGCTTTCAAGATTAC CTTTGTACCGAAACATTCGTGTAACAAAAACTACACGCGGTTGTTTACTTTCCTGATTTTATCAATGGTGGTACATGTAT ACAGTTTGCTTTTATTTCTTTTACTGGTGTTTGGATTTCTATTCAACTGAATATCAAATCATGTTATAGTCAACATGATA ATATTTTGCTTCAGCGTGCAACCGT
CDS sequence (LotjaGi1g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAAGGGAATGCATCTTGTGCCAAAGAGGAAGAGCATCCACTCCGAATCACGAGGGCGAGGGCTAGAGCCTTGGG AGGGATTCCTCCCTACTCAAGACCGTCCTTTAAGAATGACCACAAGAAAGCAAGTTCCAAAAGAGCAGCTTCTGTTAACA AAGCTTGTGCAGTGGTTCCTGATGCTCGTCAGCAGAAGAGAAAGGCAGTGCTCACAGATGTAACCAACATCAGCAAAAAG CCACATGATATGTGTATTCAAGCACCAAAATTTCAAGGAAGGGGAGTTTACAAGAAGAAAAACACAAAGCTAGCTTCAAA TGTCTCCATTGAAGCTTCATCATCACAAGAGCATGTTAAAGCAAAGTTAGCAGAAGAATCATCCACAATAAAGATGGTAG AGTCAGCCGGCTCATTTGCAGAAGCAACTTTAGATGACAAAGAGCCAGCAGCCAATTGTTTGTCCAACAACATTAAAGAA CATGTTATAGCAGGCTCCACGCTTACAATGCAAGAATCTATGCAATCTGATGAACTCCTTAGCTCTCCAAACACAGATAT GGATATAAATTGTGAGAATCCGGGAGCCTCAGATATCCCAGCCATTGTGGATATTGATTCAGAGTTAATAGACCCTCTAG TTTGGAGCTCCTATGCCCCTGACATATACAACATTACTCGAGTCAGAGAGCTTGAAAGGAGGCCATTAACCAACTACATG GATGAGTTACAGAAAGATATTTGTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTTGAGGTTTCTGAGGAATATAA GCTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATCGATCGGTTTCTCTCAACAAGATTGATTCAGAAACAAAGGC TCCAGCTTCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTAGAGGAGTTTTGC TTCATCACAGACAATACATACACAAGGGAAGAGGTATTGAAGATGGAGAGTGAAGTTCTAACACTTTTGCAATTTCAGTT ATCTTTCCCCACAACTAAAACATTTCTCAGGAGATTCATCCAAGCTGCACAAACTTCTTACAAGGCCCCTCGTGTTGAAC TGGAATTCCTAGCAAATTATTTAGCAGAGCTTGGTCTTGTTGAGTACAGCTTCTTGGAATTTCTACCTTCCATGGTGGCT GCTTCTGCTGTATTCCTTGCAAAATGGACCCTCGACCATTTAGAACATCCATGGAATCCAACTCTGGAGCATTATACAAA CTACAAATCTTCAGAGCTCAAAACTGTTGTTCTTGCACTCCAAGATCTCCAACTTAATACCAAAGGCTGTCCACTGAATG CTATACGTGAGAAATATAAATACCAGAAGTTCAATTGTGTGGCAAATCTGTCTCCAAAACCGGTGCAGTCACTCTTCCAG GTTCAAGTGTAA
Protein sequence (LotjaGi1g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKGNASCAKEEEHPLRITRARARALGGIPPYSRPSFKNDHKKASSKRAASVNKACAVVPDARQQKRKAVLTDVTNISKK PHDMCIQAPKFQGRGVYKKKNTKLASNVSIEASSSQEHVKAKLAEESSTIKMVESAGSFAEATLDDKEPAANCLSNNIKE HVIAGSTLTMQESMQSDELLSSPNTDMDINCENPGASDIPAIVDIDSELIDPLVWSSYAPDIYNITRVRELERRPLTNYM DELQKDICPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFC FITDNTYTREEVLKMESEVLTLLQFQLSFPTTKTFLRRFIQAAQTSYKAPRVELEFLANYLAELGLVEYSFLEFLPSMVA ASAVFLAKWTLDHLEHPWNPTLEHYTNYKSSELKTVVLALQDLQLNTKGCPLNAIREKYKYQKFNCVANLSPKPVQSLFQ VQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 46 | 23 | - | – | |
| PIRSF | 32 | 482 | 451 | 8.6E-124 | – | |
| PANTHER | 34 | 477 | 444 | 2.5E-183 | ||
| PANTHER | 34 | 477 | 444 | 2.5E-183 | – | |
| SUPERFAMILY | 211 | 347 | 137 | 1.04E-49 | ||
| Pfam | 221 | 348 | 128 | 1.8E-43 | ||
| Gene3D | 225 | 468 | 244 | 4.8E-97 | – | |
| Gene3D | 235 | 348 | 114 | 4.8E-97 | – | |
| CDD | 251 | 340 | 90 | 3.01687E-24 | ||
| ProSitePatterns | 252 | 283 | 32 | - | ||
| SMART | 257 | 341 | 85 | 5.0E-26 | ||
| SUPERFAMILY | 349 | 472 | 124 | 5.01E-37 | ||
| SMART | 350 | 473 | 124 | 1.0E-37 | ||
| CDD | 350 | 440 | 91 | 2.01323E-15 | ||
| Pfam | 350 | 472 | 123 | 7.2E-32 | ||
| SMART | 354 | 442 | 89 | 8.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0389100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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