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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390600 |
| Transcript ID | LotjaGi1g1v0390600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWIM zinc finger family protein; TAIR: AT4G13970.1 zinc ion binding protein; Swiss-Prot: sp|Q757M0|MED2_ASHGO Mediator of RNA polymerase II transcription subunit 2; TrEMBL-Plants: tr|I1JUK0|I1JUK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87417045..87422150) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTTTTTGTTGCTGTTCACAAACCATTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAGTTTCTCTT CTTCTTCTTAATCTGAAAACGGTGCGTGCAACCCCTTCACAAGACGAATGCAACAAGGTAAACTTCACAATTTTCCCATG AAGATTCCTTCTACTGTTTAGTGTTGCATGAGTTCAAACATTTCAATTTTCAATGGTGTATGATAAAATTTGAGTTAAGA ATAAGAATGGTAGGCAGTTACTTGAAGTGTCATTTTGTACTTGGCTTGTTTGAGAAGGTAGAACACAGTTCCAGCAAAAA GTTGACTAATTTCAAAATGGGTGTTTGGAAATTGCAGATGCCGAGAATGGAGGACATTCTAAACCTTCCAGTGCAAGACC CTCCTCTTCCTGAGTTCTCTGCTGCTCATGTAAATTGGGTGAAGTTACAAGGTGGTCGCCATGGTGGTGATGATATTGCT CTGATTCCTTTTGCCAGGGTTGATGATTTTGTGAAAGGGGAATCTTCCAATCCTGAGTGTCCTGCTAGCTTCCGTGTAGA ATCAAGAAGGAAGAGACCGGTAGGAAGCGTAGCTAAACCGAGGGTTGACGGTTATCTTGAGTATACACTGTAAGTCATGT TTAGCTTCTATGTTGTTTAAGACTAGGTGGTTTAGTGGTGGGGGGTGTGAAAAAATGTTATGTGAATCAGACCCGTTTGG AAGAGCTTAATGGAACTTATATTGTTGTATAAATGCTTATGCTAGTGTTTGGAAGAGTTTATATAATAGCTCATGACCTA TCTATGAGTTGTTTTGAGGTTATTTTTATAAGTTGCTCAAATTAGCTTATGAATAAACACTCATATTCAATAAGCTTCTA AAATTAGCTTATGAATAAATACTTATGCGATAGGTACTTATTGCCATTCATTAATATGTTTACTCAAACAAACCCTTAAT ATTTTCATCCCAGCTCTTTCCAAAAGTTTTCTTGAAATCTGAAAGGCTCATCTAATGAACAATATAAAATTTTATGTTTA TATTTAGATATTGGTGTTCTTATGGTCCTGAAGACTACCGAGAGAGTGACTTGAGTTTAGAGGATGGCACAAGCACCAAA CCTGCTTCAGGGAAGGGGAGCAGGCCAGGTAGGCGTCACATGATGAGAGGCTGCCTTTGTCATTTCACGATTAAAAGACT ATACACCAGACCCCTTCTTGCCCTGATCATATATAACCAAAGAAGGCATGTTGATAAATCAGGGGCACCGTGCCATGGAA TGCTCGACAGGGATGCTGTAGGGACAAGAGCTATGTATGCTCCACGAATTTCAGATGAGTTACGGCAGAAAGTGATGTCT ATGCTTTATGTTGGAATGTCTCTGGACAATATAATACAGCATCATGCAGAGGTGATGCAGAAGCAAGGCGGGCCACAAAA CCGTGATGATTTTCTCACTCGAAATGATGTGCGCAACATGGAAAGGACTATTCGTAATTCTTCACTTGAGCTACAGGGAA ATGATGAATACAGTGTAAAGACATGGGTGCAGCGTAATCAGAAGCATGTTTTTTATTTCCAAGATAACTCGGGTTCAGAA TCTCTTGTTTTAGGTATTCAGACAGATTGGCAGCTGCAGCAAATGCTTCGTTATGGAAGCAATGGCTTCATTTGTTTTCA TTCAAAATTTGGCTTGAAGAAGCTTAAGGTATTATACATTTACCTTTTCAAACAAGGAAAATATTATTGTTATTAAGTTT GTTGCACCTGAAGTGAGGACTTGCCAAAAGGTATAGGTTTTAGCGTATTTACGGTAACTATTGATGAGGAAAAACAAATC TAGTAGAATATCTCGTTCATCTGCAATAAAAAGTTTTACTTGGATCAATAAAGTCATGAATAGTATATAAGCCTCCTTTT TGTTTATGATAAAACTCAATTATTTCAGCTCAAAATGTCTTATATTTTTTCTCTTCTTGTCCCTGACAGCACCCCGTATG CTCTTTACTTGTTTTCGATTCATCTCAAAATGCAATTCCAGTTGCTTGGATCATCGCTTCATCTTTTGTTGGTAAAGATA TTCATAAGTGGATAGTATTGCTATCTGAAAGATTACGAGCCAAGGATCCCAGATGGCGGCCTAATGCTATTTTGTTGGAT GATCCATCTTTTAACTATTCTATCATAAGGTATAGAAGAGATTGGTGTGGTTCATTTTCAGTTTCATGATACTTCTTTGT GTATTTAGGAGAACCTACCTAATAGCAAATGGAGTGAGATCTTTCTCATTGCAGAGAGGCCTTCCAGTGTCGCATCCTAC TATGTGCCTGGCATGTTCGCCGTGCTTGGATAAAAAAACTTTTCAAGAAATGCTGCAACTTTGAGGTACAACGGGAGATG TTTAGGCACTTGGGATGGATTCTGTACTCTACGAGATGTGGACCAAATGCCATGGATGCAGTTGAAGAGCTTATGCAGAT TTTTGTCGACCAGTGTGCCTTCATGGACTATTTCAAGAGTCAATGGTTACCTATTATAGGTATTTTTCAAGTGATGTTCA TAATCAATATTCTATCTGAATGCTCTGGGATTCATATTTTATTTCCAATTCATTTCCTTCTAAGTTGCCTTCAGTTTTGC TGGGAGACAGTCACACTAGCATTTCTACTATAAGAAATTTTTTCCTAACTATTATTGGAGTATCCAAACATTTGAACATC CTGAGCATTACTACTATTTCTCAAATGATAGAATTACTGTGCTTTCTCATGCAGATATGTGGATTAGTGGCATTAAGTCA CTCCCTGCGACGACTCCTGAGCCACATGCTGCAATAGAATCCTATCACCTAAGACTAAAATCCACGCTTTTGAAGGCGAA TTATGCTAATTTCTGGTCTAGAGCTGACTGGTTAATCCACACTTTAACTACTGAATTTCACTCATTATACTGGCTAGATC AGTACAGTTTAGAAACTGGTTATCTTGAGAATCTACGAGCTGACTCTTTCTCCACTAATGCTTGGTATCATGCTCTTCAT ATTCCAGATGTTGATGTGGTACTGGATGAGCAAAATCTCAATCTTGCCAAAGTTTTATCCCAGACTGACCGAAGCTTGGT CTACACAGTTTGGAATCCTGGTTCAGAATTTTCACTTTGTGATTGTTCCTGGTCTAGGCTGGGAAACCTGTGTAAACATG TCATCAAGGTGGCAACTTTCTGTAGAAGTCAGCAGGTTGCAAGACCATTATTGTCTGCTCAAGTTTATAAACAAGCTTTG CTCACCCTTCTCCATAATCCTCCGGATGATCCCTTAGTTCTTGATCATACCGTTCTACATGTGGCCCGTTTGCAACAAGA CATTAAAGCCCTGGAAGACTTGTCAAATAGTGGATTACTCCAGCCTGTAGTCCCTGATTTAAGTTCTCAAATGGCTGATA ATCCTCTGCTTTTTCAGCGCTTCCCATGACTGGCCTTGTTTGAAAGGAGGCCTATGGTCAGTTTAAAGGACACTTCATTG CTTATTCATTTGAGACTACTTTCGTCCAGCAGTCAATTTGGAAGCATTTGAAAGGATATATTTTTGCTTTTAAGAAGGTT GCACAACTATTGAGTTCATAAAACCGCAACACCCTGCTCAGAGAAGTAATTTTCTTGACATGCTCCATATGGTCCTATAC CATTATGTCATTGTTTTTTCCTTGGGATTTTCTCTTTCTTTTTAGGAGGGGTGTTGGGGTGGGAGGGGGAGGGACTTATG TTATTGAATTTCAATTCAGAATCTGTGTTACACACAAACACACCTCATGCATTGGTTCTTTTCAAGTAAGCTAAAAGTTC TTTACTTTCCACATGCAGTGTAGGTGGAGTTTGACCTATGGTTATATTTGAGGCTATTTGAGGTTTTTGGTGGCTTCTCC GTAGTATATTTGAGGCTGGGATCACGTTGAGGTAGGTAACATGTATAGAAACTTTAAGGTTCTTTGTAGATTAAACCACC ATTTAGTATAAGCAAATATTTCTCAAATGATCAGATCTAATATAACAAATCCATCTCTATGCTTTGCTTTACTTTAATTA TACCTAATATCATTTAGTCTATGTTTCCTAGCCAGTGTTCCTTTCAATTAACAGATTGATCATTATCTTCTAGCTGCAGT GCTCGGGAGTTTGATCCATTGTTTTCGTATCAGCTTGCAGAAGATAATTACAAGAATTGGAGGTATTTAAAGTCTTACAC TTTGTGCTGAAAATGCCATTCAACTTGACAACTTATGAACTAGACAGGTGAATTAGCATTTTAATGTTTGATTCCCACCA TACATTATATGTTGATTTGTTATATTTGCTTGTTGATTTGATGATTTGGATGGAGGTCATGATTATTGAAGGAGATATTC ATGTGGTTGGGCATCCTGTAATTTCAGTTATGGTCTCTTGGTGGAGGATCCTCTGGTGACAAATCATTTGTGGGATGCCA AGTAATAAAAGGTGCATAGGCAATGAGCCAATCCGACCTCTTAAAAGTTCAACAAGAGCATCATCAGAAGAGCTATTGCT ATCTCAAAAAGGAGCTGTTGTCCGATAAGATTTCCACAGTTGAGCTATCAACCACTTGAATAGCTGAGTGAGATAAACTG AAAGCTCAAGTCAGGACACTATATATGTTTCTTTCTTTCCATCCGGGGGGGTAGACCACTCAATGCGTGCTAGTTGCATT GGTTAAAAGTGGTTGTTTGAATCTCTAAGTTCAAAGTTTGATCCTTAGGAGCCCGTTTTTAGGGGATCATTTGGTCACCA CACCTTGAAATTACGAGACCAATTTAGTACACAAAATAAAGGAGTAGTCTCATTTGGGGATTAGGCATATCAAGGACACT TGTGTTCCTTGATCACATATCCTGAATTCCTGACCTTTCCTTTGCTTTTTTTTTATTTTGTTTTGTTTTTGTCAAAATTT GTCCTTTACTAATGATGAATGAATAGTATCCGCATGCTTTGCGTAGCGAATTTGTGTGTTATAGCAGCTTGTAACGTGAC ACATTAAGGAAAATTAGATGTTTTACCCACTAATATATTCGGTGAATTAAATGATGAAGATGAGAA
CDS sequence (LotjaGi1g1v0390600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAGAATGGAGGACATTCTAAACCTTCCAGTGCAAGACCCTCCTCTTCCTGAGTTCTCTGCTGCTCATGTAAATTG GGTGAAGTTACAAGGTGGTCGCCATGGTGGTGATGATATTGCTCTGATTCCTTTTGCCAGGGTTGATGATTTTGTGAAAG GGGAATCTTCCAATCCTGAGTGTCCTGCTAGCTTCCGTGTAGAATCAAGAAGGAAGAGACCGGTAGGAAGCGTAGCTAAA CCGAGGGTTGACGGTTATCTTGAGTATACACTATATTGGTGTTCTTATGGTCCTGAAGACTACCGAGAGAGTGACTTGAG TTTAGAGGATGGCACAAGCACCAAACCTGCTTCAGGGAAGGGGAGCAGGCCAGGTAGGCGTCACATGATGAGAGGCTGCC TTTGTCATTTCACGATTAAAAGACTATACACCAGACCCCTTCTTGCCCTGATCATATATAACCAAAGAAGGCATGTTGAT AAATCAGGGGCACCGTGCCATGGAATGCTCGACAGGGATGCTGTAGGGACAAGAGCTATGTATGCTCCACGAATTTCAGA TGAGTTACGGCAGAAAGTGATGTCTATGCTTTATGTTGGAATGTCTCTGGACAATATAATACAGCATCATGCAGAGGTGA TGCAGAAGCAAGGCGGGCCACAAAACCGTGATGATTTTCTCACTCGAAATGATGTGCGCAACATGGAAAGGACTATTCGT AATTCTTCACTTGAGCTACAGGGAAATGATGAATACAGTGTAAAGACATGGGTGCAGCGTAATCAGAAGCATGTTTTTTA TTTCCAAGATAACTCGGGTTCAGAATCTCTTGTTTTAGGTATTCAGACAGATTGGCAGCTGCAGCAAATGCTTCGTTATG GAAGCAATGGCTTCATTTGTTTTCATTCAAAATTTGGCTTGAAGAAGCTTAAGCACCCCGTATGCTCTTTACTTGTTTTC GATTCATCTCAAAATGCAATTCCAGTTGCTTGGATCATCGCTTCATCTTTTGTTGGTAAAGATATTCATAAGTGGATAGT ATTGCTATCTGAAAGATTACGAGCCAAGGATCCCAGATGGCGGCCTAATGCTATTTTGTTGGATGATCCATCTTTTAACT ATTCTATCATAAGGTATAGAAGAGATTGGTGTGGTTCATTTTCAGTTTCATGA
Protein sequence (LotjaGi1g1v0390600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRMEDILNLPVQDPPLPEFSAAHVNWVKLQGGRHGGDDIALIPFARVDDFVKGESSNPECPASFRVESRRKRPVGSVAK PRVDGYLEYTLYWCSYGPEDYRESDLSLEDGTSTKPASGKGSRPGRRHMMRGCLCHFTIKRLYTRPLLALIIYNQRRHVD KSGAPCHGMLDRDAVGTRAMYAPRISDELRQKVMSMLYVGMSLDNIIQHHAEVMQKQGGPQNRDDFLTRNDVRNMERTIR NSSLELQGNDEYSVKTWVQRNQKHVFYFQDNSGSESLVLGIQTDWQLQQMLRYGSNGFICFHSKFGLKKLKHPVCSLLVF DSSQNAIPVAWIIASSFVGKDIHKWIVLLSERLRAKDPRWRPNAILLDDPSFNYSIIRYRRDWCGSFSVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 7.5E-229 | – | |
| PANTHER | 1 | 378 | 378 | 7.5E-229 | – | |
| MobiDBLite | 105 | 126 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0390600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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