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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390600 |
| Transcript ID | LotjaGi1g1v0390600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWIM zinc finger family protein; TAIR: AT1G60560.1 SWIM zinc finger family protein; Swiss-Prot: sp|Q96MP5|ZSWM3_HUMAN Zinc finger SWIM domain-containing protein 3; TrEMBL-Plants: tr|I1JUK0|I1JUK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87417402..87420513) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGAGAATGGAGGACATTCTAAACCTTCCAGTGCAAGACCCTCCTCTTCCTGAGTTCTCTGCTGCTCATGTAAATTG GGTGAAGTTACAAGGTGGTCGCCATGGTGGTGATGATATTGCTCTGATTCCTTTTGCCAGGGTTGATGATTTTGTGAAAG GGGAATCTTCCAATCCTGAGTGTCCTGCTAGCTTCCGTGTAGAATCAAGAAGGAAGAGACCGGTAGGAAGCGTAGCTAAA CCGAGGGTTGACGGTTATCTTGAGTATACACTGTAAGTCATGTTTAGCTTCTATGTTGTTTAAGACTAGGTGGTTTAGTG GTGGGGGGTGTGAAAAAATGTTATGTGAATCAGACCCGTTTGGAAGAGCTTAATGGAACTTATATTGTTGTATAAATGCT TATGCTAGTGTTTGGAAGAGTTTATATAATAGCTCATGACCTATCTATGAGTTGTTTTGAGGTTATTTTTATAAGTTGCT CAAATTAGCTTATGAATAAACACTCATATTCAATAAGCTTCTAAAATTAGCTTATGAATAAATACTTATGCGATAGGTAC TTATTGCCATTCATTAATATGTTTACTCAAACAAACCCTTAATATTTTCATCCCAGCTCTTTCCAAAAGTTTTCTTGAAA TCTGAAAGGCTCATCTAATGAACAATATAAAATTTTATGTTTATATTTAGATATTGGTGTTCTTATGGTCCTGAAGACTA CCGAGAGAGTGACTTGAGTTTAGAGGATGGCACAAGCACCAAACCTGCTTCAGGGAAGGGGAGCAGGCCAGGTAGGCGTC ACATGATGAGAGGCTGCCTTTGTCATTTCACGATTAAAAGACTATACACCAGACCCCTTCTTGCCCTGATCATATATAAC CAAAGAAGGCATGTTGATAAATCAGGGGCACCGTGCCATGGAATGCTCGACAGGGATGCTGTAGGGACAAGAGCTATGTA TGCTCCACGAATTTCAGATGAGTTACGGCAGAAAGTGATGTCTATGCTTTATGTTGGAATGTCTCTGGACAATATAATAC AGCATCATGCAGAGGTGATGCAGAAGCAAGGCGGGCCACAAAACCGTGATGATTTTCTCACTCGAAATGATGTGCGCAAC ATGGAAAGGACTATTCGTAATTCTTCACTTGAGCTACAGGGAAATGATGAATACAGTGTAAAGACATGGGTGCAGCGTAA TCAGAAGCATGTTTTTTATTTCCAAGATAACTCGGGTTCAGAATCTCTTGTTTTAGGTATTCAGACAGATTGGCAGCTGC AGCAAATGCTTCGTTATGGAAGCAATGGCTTCATTTGTTTTCATTCAAAATTTGGCTTGAAGAAGCTTAAGGTATTATAC ATTTACCTTTTCAAACAAGGAAAATATTATTGTTATTAAGTTTGTTGCACCTGAAGTGAGGACTTGCCAAAAGGTATAGG TTTTAGCGTATTTACGGTAACTATTGATGAGGAAAAACAAATCTAGTAGAATATCTCGTTCATCTGCAATAAAAAGTTTT ACTTGGATCAATAAAGTCATGAATAGTATATAAGCCTCCTTTTTGTTTATGATAAAACTCAATTATTTCAGCTCAAAATG TCTTATATTTTTTCTCTTCTTGTCCCTGACAGCACCCCGTATGCTCTTTACTTGTTTTCGATTCATCTCAAAATGCAATT CCAGTTGCTTGGATCATCGCTTCATCTTTTGTTGGTAAAGATATTCATAAGTGGATAGTATTGCTATCTGAAAGATTACG AGCCAAGGATCCCAGATGGCGGCCTAATGCTATTTTGTTGGATGATCCATCTTTTAACTATTCTATCATAAGGTATAGAA GAGATTGGTGTGGTTCATTTTCAGTTTCATGATACTTCTTTGTGTATTTAGGAGAACCTACCTAATAGCAAATGGAGTGA GATCTTTCTCATTGCAGAGAGGCCTTCCAGTGTCGCATCCTACTATGTGCCTGGCATGTTCGCCGTGCTTGGATAAAAAA ACTTTTCAAGAAATGCTGCAACTTTGAGGTACAACGGGAGATGTTTAGGCACTTGGGATGGATTCTGTACTCTACGAGAT GTGGACCAAATGCCATGGATGCAGTTGAAGAGCTTATGCAGATTTTTGTCGACCAGTGTGCCTTCATGGACTATTTCAAG AGTCAATGGTTACCTATTATAGGTATTTTTCAAGTGATGTTCATAATCAATATTCTATCTGAATGCTCTGGGATTCATAT TTTATTTCCAATTCATTTCCTTCTAAGTTGCCTTCAGTTTTGCTGGGAGACAGTCACACTAGCATTTCTACTATAAGAAA TTTTTTCCTAACTATTATTGGAGTATCCAAACATTTGAACATCCTGAGCATTACTACTATTTCTCAAATGATAGAATTAC TGTGCTTTCTCATGCAGATATGTGGATTAGTGGCATTAAGTCACTCCCTGCGACGACTCCTGAGCCACATGCTGCAATAG AATCCTATCACCTAAGACTAAAATCCACGCTTTTGAAGGCGAATTATGCTAATTTCTGGTCTAGAGCTGACTGGTTAATC CACACTTTAACTACTGAATTTCACTCATTATACTGGCTAGATCAGTACAGTTTAGAAACTGGTTATCTTGAGAATCTACG AGCTGACTCTTTCTCCACTAATGCTTGGTATCATGCTCTTCATATTCCAGATGTTGATGTGGTACTGGATGAGCAAAATC TCAATCTTGCCAAAGTTTTATCCCAGACTGACCGAAGCTTGGTCTACACAGTTTGGAATCCTGGTTCAGAATTTTCACTT TGTGATTGTTCCTGGTCTAGGCTGGGAAACCTGTGTAAACATGTCATCAAGGTGGCAACTTTCTGTAGAAGTCAGCAGGT TGCAAGACCATTATTGTCTGCTCAAGTTTATAAACAAGCTTTGCTCACCCTTCTCCATAATCCTCCGGATGATCCCTTAG TTCTTGATCATACCGTTCTACATGTGGCCCGTTTGCAACAAGACATTAAAGCCCTGGAAGACTTGTCAAATAGTGGATTA CTCCAGCCTGTAGTCCCTGATTTAAGTTCTCAAATGGCTGATAATCCTCTGCTTTTTCAGCGCTTCCCATGA
CDS sequence (LotjaGi1g1v0390600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAGAATGGAGGACATTCTAAACCTTCCAGTGCAAGACCCTCCTCTTCCTGAGTTCTCTGCTGCTCATGTAAATTG GGTGAAGTTACAAGGTGGTCGCCATGGTGGTGATGATATTGCTCTGATTCCTTTTGCCAGGGTTGATGATTTTGTGAAAG GGGAATCTTCCAATCCTGAGTGTCCTGCTAGCTTCCGTGTAGAATCAAGAAGGAAGAGACCGGTAGGAAGCGTAGCTAAA CCGAGGGTTGACGGTTATCTTGAGTATACACTATATTGGTGTTCTTATGGTCCTGAAGACTACCGAGAGAGTGACTTGAG TTTAGAGGATGGCACAAGCACCAAACCTGCTTCAGGGAAGGGGAGCAGGCCAGGTAGGCGTCACATGATGAGAGGCTGCC TTTGTCATTTCACGATTAAAAGACTATACACCAGACCCCTTCTTGCCCTGATCATATATAACCAAAGAAGGCATGTTGAT AAATCAGGGGCACCGTGCCATGGAATGCTCGACAGGGATGCTGTAGGGACAAGAGCTATGTATGCTCCACGAATTTCAGA TGAGTTACGGCAGAAAGTGATGTCTATGCTTTATGTTGGAATGTCTCTGGACAATATAATACAGCATCATGCAGAGGTGA TGCAGAAGCAAGGCGGGCCACAAAACCGTGATGATTTTCTCACTCGAAATGATGTGCGCAACATGGAAAGGACTATTCGT AATTCTTCACTTGAGCTACAGGGAAATGATGAATACAGTGTAAAGACATGGGTGCAGCGTAATCAGAAGCATGTTTTTTA TTTCCAAGATAACTCGGGTTCAGAATCTCTTGTTTTAGGTATTCAGACAGATTGGCAGCTGCAGCAAATGCTTCGTTATG GAAGCAATGGCTTCATTTGTTTTCATTCAAAATTTGGCTTGAAGAAGCTTAAGCACCCCGTATGCTCTTTACTTGTTTTC GATTCATCTCAAAATGCAATTCCAGTTGCTTGGATCATCGCTTCATCTTTTGTTGGTAAAGATATTCATAAGTGGATAGT ATTGCTATCTGAAAGATTACGAGCCAAGGATCCCAGATGGCGGCCTAATGCTATTTTGTTGGATGATCCATCTTTTAACT ATTCTATCATAAGAGAGGCCTTCCAGTGTCGCATCCTACTATGTGCCTGGCATGTTCGCCGTGCTTGGATAAAAAAACTT TTCAAGAAATGCTGCAACTTTGAGGTACAACGGGAGATGTTTAGGCACTTGGGATGGATTCTGTACTCTACGAGATGTGG ACCAAATGCCATGGATGCAGTTGAAGAGCTTATGCAGATTTTTGTCGACCAGTGTGCCTTCATGGACTATTTCAAGAGTC AATGGTTACCTATTATAGATATGTGGATTAGTGGCATTAAGTCACTCCCTGCGACGACTCCTGAGCCACATGCTGCAATA GAATCCTATCACCTAAGACTAAAATCCACGCTTTTGAAGGCGAATTATGCTAATTTCTGGTCTAGAGCTGACTGGTTAAT CCACACTTTAACTACTGAATTTCACTCATTATACTGGCTAGATCAGTACAGTTTAGAAACTGGTTATCTTGAGAATCTAC GAGCTGACTCTTTCTCCACTAATGCTTGGTATCATGCTCTTCATATTCCAGATGTTGATGTGGTACTGGATGAGCAAAAT CTCAATCTTGCCAAAGTTTTATCCCAGACTGACCGAAGCTTGGTCTACACAGTTTGGAATCCTGGTTCAGAATTTTCACT TTGTGATTGTTCCTGGTCTAGGCTGGGAAACCTGTGTAAACATGTCATCAAGGTGGCAACTTTCTGTAGAAGTCAGCAGG TTGCAAGACCATTATTGTCTGCTCAAGTTTATAAACAAGCTTTGCTCACCCTTCTCCATAATCCTCCGGATGATCCCTTA GTTCTTGATCATACCGTTCTACATGTGGCCCGTTTGCAACAAGACATTAAAGCCCTGGAAGACTTGTCAAATAGTGGATT ACTCCAGCCTGTAGTCCCTGATTTAAGTTCTCAAATGGCTGATAATCCTCTGCTTTTTCAGCGCTTCCCATGA
Protein sequence (LotjaGi1g1v0390600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRMEDILNLPVQDPPLPEFSAAHVNWVKLQGGRHGGDDIALIPFARVDDFVKGESSNPECPASFRVESRRKRPVGSVAK PRVDGYLEYTLYWCSYGPEDYRESDLSLEDGTSTKPASGKGSRPGRRHMMRGCLCHFTIKRLYTRPLLALIIYNQRRHVD KSGAPCHGMLDRDAVGTRAMYAPRISDELRQKVMSMLYVGMSLDNIIQHHAEVMQKQGGPQNRDDFLTRNDVRNMERTIR NSSLELQGNDEYSVKTWVQRNQKHVFYFQDNSGSESLVLGIQTDWQLQQMLRYGSNGFICFHSKFGLKKLKHPVCSLLVF DSSQNAIPVAWIIASSFVGKDIHKWIVLLSERLRAKDPRWRPNAILLDDPSFNYSIIREAFQCRILLCAWHVRRAWIKKL FKKCCNFEVQREMFRHLGWILYSTRCGPNAMDAVEELMQIFVDQCAFMDYFKSQWLPIIDMWISGIKSLPATTPEPHAAI ESYHLRLKSTLLKANYANFWSRADWLIHTLTTEFHSLYWLDQYSLETGYLENLRADSFSTNAWYHALHIPDVDVVLDEQN LNLAKVLSQTDRSLVYTVWNPGSEFSLCDCSWSRLGNLCKHVIKVATFCRSQQVARPLLSAQVYKQALLTLLHNPPDDPL VLDHTVLHVARLQQDIKALEDLSNSGLLQPVVPDLSSQMADNPLLFQRFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 688 | 688 | 0.0 | – | |
| PANTHER | 1 | 688 | 688 | 0.0 | – | |
| MobiDBLite | 105 | 126 | 22 | - | – | |
| ProSiteProfiles | 576 | 610 | 35 | 8.766 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0390600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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