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LotjaGi1g1v0391200.1

Overview

Field Value
Gene ID LotjaGi1g1v0391200
Transcript ID LotjaGi1g1v0391200.1
Lotus japonicus genome version Gifu v1.2
Description Remodeling and spacing factor 1; TAIR: AT5G25580.1 hypothetical protein; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|A0A151SQU5|A0A151SQU5_CAJCA Remodeling and spacing factor 1; Found in the gene: LotjaGi1g1v0391200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87527899..87534082) extracted from Lotus japonicus Gifu genome v1.2.

TCCAAAATGACCGCATTTTACTGCGGCAAGAAGCAAAATAGGTGATAAAACGGTGCGTTTAGCGAAGATGAGGAAGGAGG GAATGGAAGTGGAAAAGGCGCGATTCTGAAAATTAACCCTAAACACTAGAAAATTCTAACCTAAAGACCCAGAAACAAAC TTAACAGAAGCGATTCTCAAACTCTCCACTCTCCATCTCTGGTTAAAAGTGAAAAATCGATTTGAGCGGGAAACTGCTCT ATAACTTCCACTCCTCCAAGTTGCATCCCTCTCTCTCTCTCTCTCGCTTGTTCGTTCGTTCTTCCGAATCTTCTCTTCTC CCTCCGTCACCGGAAAATGCAGCACGGCGTAGAGGACGGTGGTAGCGGCGACGACCAAAACGCGCGTCCCGAGGAGAATC ATCTGGACTCCGAGATTCTCAAGCTGCGTCAACGCTGGGAACTCGCTTCTGTTCTCAATTTCTTGGACGTAAGTAACATA TCTGAACTCTCCATTGTTCGCTGCCGAGATTATATTCATCGCTTATTGTTGAAGTGGTTGGAATTGATTATGTTAGGTTA CGAAATCGTGAAGGATTTCATTGTTATTTTGGTTTTGATATAGAAAATTTTCAGCGAGGGTAACAGTGTGTTGTTTGTTG ATTCATGTTGTGATGGTGTGATTCAGGTGTTTAGTCCGATACTTGGTAAGGATTTGAAGCTGTCAGCTGAAGAAATTGAG ATCGGCCTTGTTAAGCCTGATGCTGCGCTTTCTCGTCTTCATGTTCAACTTTTGAAGGTACCTTAATCTCTTGTGCTTTT GCATGAAATTGTTTGGTTGAATACTCATACTTCATAGCACGATATTGAGTTTTTCTAGAAACCATTTTATTTGCTGCAAC GATTAGAAGTTGTTGATTGACATGTTGTTGCATGTAATATTAGTTGAGGACTTGAGGCTATAGCGGCGCAATAGCGCTAT AGCGTAGCGCCCTGGGGATTCACCACTACTCCACTATTCACCGCTATTGTCCGCTATAGAACCGCAATAGCGCTCAAAAT AGCGTTTTTTGGGCTTGCCGCTATGCTGCACTATCCGCCATTAACAACCCTGGGTTCATTACTTTCATGTGCTTTAACTT CTAATAGACTGCATAAAAAGTGGATATGAGGTTGGTGAGGTTTTTTCATTGCTTTGCATGTAATATCTGGTGTGGCAAGA AGCAATGGATGGTGAAAATTACTCATTTGATCTAATCGCTTTGTGGGTAAAATTTTGAGTTCTTTGTTCAATTTATAAGC TCTTACTAGTAATCCTAATTGAAAGACTTCGCTTTCACACCTTATTTAGATGGAACACGGATCAGTTATGAGTTGAAACT TGAAATGAACTTCTCATGAACCGTGTTATTGATTCTTAATAACTATTTCCAAAGGTGCATTATCTCATCGTCCAAAGTAC ATGAAGTTCAATGGGGATATAATTGAAGAAGTATTTTTCTTTTGCATATAAAATTACCAGGAAAGCTTAATATATGGAAG GAAAGAGCATTTAGCTATAAGGTAGAATATACTAATACTGTGATTTGGGTAACTTTCTCAAATCGAACCAACCATTCTCT CCATTCATATGGTTTGTATTTTTGTGTTGATGGCTTCCTACCTGTTATTATGTAGATGTTGGTCCATTATTTGTTTCATT TTAAATTTGAATTTCTTTTTTATTTTTGCTAGGGAATGCCACCTGTGAGTAAAACATTGGATGATTCTGATAAATGGGTG ACCGTACTCTGTAAGAAGCTGACAATGTGGTGGCCTTGGGTGAGTCACTGATTGAATGTTTTTTGAGATTGCCTTTTCTC CCCTCTTCCCATTGCTGATTGATTCTTTGCTTCAGGTTGCTGAGGGGGAGATTCCACTTAAACAATCTAAAGGGTACTGC GATGATCTGGTCATGTCCTGTTAATAATAATTGCCCACATTTAAAAATCTGATATCTTCAATGTTTGTACAGAGAGGAGA TATCCAAGTACAAGGAACTTGATCCATCAGATCGTTTACTGCTGCTAAAAGCACTTTGTGAAGTTAGAGCTGACGTATTA CTACCTCTTGTCTAATTTCTTCAATTTTTTCTTCCCTTAATATATTATAATGGTTAATTTTGCATTTTCATGACTAGATA GTTCTCTTAGATCATTGTTGGTGTTGTTCTTTTTCTATTTTAATTTTATCATCTGATATAAGTTATTTTGTTTGGGTGGT TGTTTATGCATAGCAACACGATGCAGTGTCATACATTAATGACGCCTTAAAAGAAGGAACCCAAGTTTCTTCTTTTCGCA AAGATGCCTTAGGAAGAGATGGAGCTGGTACATCCTATTGGTAATTTTTTAATATGCTCCAATCTTTTTAGGATTCTCAA GACCATAAAATCCTCATTACTCATTTGTCTATTGTAGGTATGATGCAAATTCAAAAGGTCAAAGTCACAGATTGTACAAG GAAACAATCACCATGTCAAGATCAAGCCCAAAGGCTAAGGTCAAAGGATGTTTACCACTTCCGACCATTAACTTCCATTG GGAAACACTTGCTTCCAATCTTGAGGAATTTTCAGAAGTAGCTGTAAGATCAAGTTAACTGGATTTTGTCCTTAATTTTT ACATGCAGATTTGAAACCTAAGTTAAGTCTGTTTTTGAATGCTAATCACAGGAAAAATTCTCATCCAGCATGTCAACTTT GGAATTTAATGTTGGCAAGAAGCTTCAAAGTGATGCCATTCCTGTTCTTGAAAAGCTTCAGAAGGTATGAACATTCTCTT GTTTAATGTTTGGTTGGATTCTATTCTAAGAAAAACATCATCTTTGTTAGATATTGATGTAAAGTAATATTGCTATTACA TTATGCAGAAGAAAGAAAGAGCATTGAAACAGAAGCAGAGGCAGGAAATGCTTTTGAAAGATTTTCAGAAACCTTATGTT TCTGGAACTACACGATCTTGTCGCACTCGAAAGCCTATTAGTTACACATTTGGTAAGATGTGGTATCATATGTTCCATTT TTTGGCACATTCCACTTGTCCTGCATATTAATGAAATTGTCTTTGTTATGCTTGTACTTCATTGATAATGTATAACCTGC ACTCTCAATGGAATGATGTAGAGCTTGAGCTGTTGTCAGATGTTCATTCTTTGGAATTATGTAGTATTGCTTTGTTTAAA TTTCCCCGATCAAATAAACTCAGCCTCCTTTCCTCTGGTATTATGTTTTATGTATCAGTTTCCTGTCTTAGGGAGCAATG TGCTCTGTTTACATGAAACAAGTATCTGGTTATTTCAATCCAGAATGTCAAATTATTAAAAAATCTATCCTCATGAATGC TATTCCAATGTTAGGAGTCACATTTCTAGCTTCCACGTCTAACTTATCTCCTCATTGGCTGTAAACTTCAGTATGTGTAT GTGAATTAGATCGAGTGAATTATTAATAGCTAAAGCTAAACACATTTTATAAGTAGTCACATTGCTAGATGCTTCTGATA AATTATCAATGGAAATGAAATGTTTTGATTTCTTTCTTCTTTCTCTCTCTGTAATATCTATTGGGTTTTAGGCATTAATC AAGCCTGTTTGTGAAATATTGCAGAAGCTTATGATCAAACAATTAAGGAGGCAATACAGCTAACAAAGTATGTACTATGT GGCATTGTATTTTATTAGTTCATTTTCATTCAGCGCTTTGCTTCTTTTACATCATTACTTTGTGACCTACATGTATACAC AATACACCACATTCTGAGATGAAAGTGGATGTTACTGTGAATAAAAACAGTGGTTGTTTAACAATGGTTACCCAACAGGC CAACAATGTCTTTTCTGCAGAAGTATGAAGTTAGAGCTAACATTGACACTTTTTTGTCTAATACATGTTGGTTTCTGAAT CTAATTCTGCCTTTCATAATATTTACTTCCATTTCTTTGACTAATGTTTAGCAAAAGGAAGTCTCCTGGTGCTAGCCAAG ATGGAAACAGAGGATCAGAAGATAAATCCAACTCAAAAGATGTTTCTTCCACAGACAGTGATTCAAAAAGCGATGTGCCC CCCTTATCCGAGAGTGATGATACTGGTTATAAAATTGAGAATCGCGGTAGCAGTGAGGAAGAGAATGACGACATTGATAG TGAGATGGGTAGGTCAGAAGCACAGACAAGCCGTGCAGTTTCTTATCCCAAGGGTGTTCGCCAGAGTGAGCGGTTAACTG GCGTCCCTAACCATTCAGTTCAAGAAAACAGAGCAAAGCAAAGACTGAGACAAAGACTAACCCGCAATTCTGCCATGGAA TCTATAGTTATACCGGATTCAGAGGATGAACAAGGAGGGAAGACAGATCTCTCGGAGTCTAGTTAAGTTAGGCCTAGTGT CTAATTATATTTTGGCCTAGTATCGTAGAATGCTTGTCATGAAAATTTTGGGGAATTTGAACTACATTCCTCACCCTAGG CTTATATATATTTTTTGTATTTCTCTTCTTTTCTATCTATTGTCTCTGAAGTCATGAACCGTTAACTCTTAGTGATGTGA TTCGTGAATTTTTGAAATACTTGGCATATAATATATAAAAATAGATGGCTAATGAATGCATTTTCATGTTAGTTTGGTTC CTCTTCTTTGGATCTTCCAACTTTTCTGTTGTAGTTTGTTTTCTGTTCTCTTGTACCAAAAGAGCTATTATATTTTTTTG GAATCAAGAGGAAGGCAAAAGAGCTATTATCTATTAATGATCATCCAAACAATCTCAGTTTTAAAATCACAAAATTCTTT CGTCTTAACATATTGTATAGAATTGAAAGAAAAACTAACAAAACAACAATAAAAATCTAATAAATAAGAACATCCAATCT AATATAAATGGAGAGCAATCCTTTCAAAACCAACATCCCCTAAATTAATCCAAAACCTTAGTATTTTCCATTTTACATGA TTCACATAATCAAATCATGAATCCAACAAAAAACAAGTGCATACAACATTGGAAGCACATGTTTATACAATGAAGAAGAA ACAAAAATTAACCAGTGATCATAGTTCCAGCACCTTCATCAGTTAAAATCTCCAGTAACAAAGAGTGTGGAACCCTGCCA TCAATAATGCTGGCTGTAGTAACACCTTGCGCGAGCGATCGCACGCAACAATTCACCTTCGGAATCATGCCACCACCAAC CTTGCCATCCTCCATCATCCTCTTCACCCCTTTTATATCAATCTTCTTCACCAAGCTATCCGGATCATTCCGATCCTCCA AAATCCCCGCCACATCAGTCAACAGAATCAGCTTCTCCGCCCCCAGCGCAGCCGCCAACTCTCCGGCCACCGTGTCCGCA TTGATGTTATACGGCTGCCCGGACTCATCCGCCGCCACGGACGTCACCACCGGAATGTGGTTGCTGTCAATCAGCGACCG GAGAACTGCAGGGTCCACCCTGGCCACCTCGCCGACAAACCCTAGGTCAGAGGCTTTAGGGCTGGGCCTCGCCATGAGGA GGCGGCCGTCCATTCCGGAGAGTCCAACAGCGGTGGCTCCAGCCTTGTTGATGAGCGAGACGAGGGTCTTATTAACCTTG CCTACCAGTACCATGGACACGATCTCCATGGTTTCAGCATCAGTGACGCGGAGGCCATCGCGGAAGACAGCCTGAATATT GAGGCGGCCGAGCCAGTTGTTGATCTCAGGGCCGCCGCCGTGAACCATGACAGGACGAAGGCCGACGCAGGAGAGGAGGA CGAGGTCGTTGATTACAGAAGCTTGCAGCTCAGGGGACTTCATGGCGGCGCCGCCATACTTGACGACGATGGTCTTGCCC CTGAATTTCTGGATGAAGGGGAGCGATTCCGCGAGGATGTCAACTCGGGATTGACCCGGAGACAGTGACTCGGCGGCGGT GGTGGTCGGCGGAAGGTGAACGGCGGAGCTACAGCGGCAAGCAGTTGAAGGGAAAGTGAGGTTAGTGGTTGGATTTTTGG TTTTGATTTCGGTTCTGGAAATGAATGGGAAAGGGGTGAACAAGTTTGTGAAGGTTTTGGAAATCAATGCTCCACCCAAC ATTGCGTTGTTCTGCACACACTGTAATGTGAAGTGAGTGAAGATACTGAGTGAGAGGGCAAAAGGGTTTCAGAGTTCACT GACTATAACTTGAAAATGAAATAC 

CDS sequence (LotjaGi1g1v0391200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCACGGCGTAGAGGACGGTGGTAGCGGCGACGACCAAAACGCGCGTCCCGAGGAGAATCATCTGGACTCCGAGAT TCTCAAGCTGCGTCAACGCTGGGAACTCGCTTCTGTTCTCAATTTCTTGGACGTGTTTAGTCCGATACTTGGTAAGGATT TGAAGCTGTCAGCTGAAGAAATTGAGATCGGCCTTGTTAAGCCTGATGCTGCGCTTTCTCGTCTTCATGTTCAACTTTTG AAGGGAATGCCACCTGTGAGTAAAACATTGGATGATTCTGATAAATGGGTGACCGTACTCTGTAAGAAGCTGACAATGTG GTGGCCTTGGGTTGCTGAGGGGGAGATTCCACTTAAACAATCTAAAGGAGAGGAGATATCCAAGTACAAGGAACTTGATC CATCAGATCGTTTACTGCTGCTAAAAGCACTTTGTGAAGTTAGAGCTGACCAACACGATGCAGTGTCATACATTAATGAC GCCTTAAAAGAAGGAACCCAAGTTTCTTCTTTTCGCAAAGATGCCTTAGGAAGAGATGGAGCTGGTACATCCTATTGGTA TGATGCAAATTCAAAAGGTCAAAGTCACAGATTGTACAAGGAAACAATCACCATGTCAAGATCAAGCCCAAAGGCTAAGG TCAAAGGATGTTTACCACTTCCGACCATTAACTTCCATTGGGAAACACTTGCTTCCAATCTTGAGGAATTTTCAGAAGTA GCTGAAAAATTCTCATCCAGCATGTCAACTTTGGAATTTAATGTTGGCAAGAAGCTTCAAAGTGATGCCATTCCTGTTCT TGAAAAGCTTCAGAAGAAGAAAGAAAGAGCATTGAAACAGAAGCAGAGGCAGGAAATGCTTTTGAAAGATTTTCAGAAAC CTTATGTTTCTGGAACTACACGATCTTGTCGCACTCGAAAGCCTATTAGTTACACATTTGAAGCTTATGATCAAACAATT AAGGAGGCAATACAGCTAACAAACAAAAGGAAGTCTCCTGGTGCTAGCCAAGATGGAAACAGAGGATCAGAAGATAAATC CAACTCAAAAGATGTTTCTTCCACAGACAGTGATTCAAAAAGCGATGTGCCCCCCTTATCCGAGAGTGATGATACTGGTT ATAAAATTGAGAATCGCGGTAGCAGTGAGGAAGAGAATGACGACATTGATAGTGAGATGGGTAGGTCAGAAGCACAGACA AGCCGTGCAGTTTCTTATCCCAAGGGTGTTCGCCAGAGTGAGCGGTTAACTGGCGTCCCTAACCATTCAGTTCAAGAAAA CAGAGCAAAGCAAAGACTGAGACAAAGACTAACCCGCAATTCTGCCATGGAATCTATAGTTATACCGGATTCAGAGGATG AACAAGGAGGGAAGACAGATCTCTCGGAGTCTAGTTAA 

Protein sequence (LotjaGi1g1v0391200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQHGVEDGGSGDDQNARPEENHLDSEILKLRQRWELASVLNFLDVFSPILGKDLKLSAEEIEIGLVKPDAALSRLHVQLL KGMPPVSKTLDDSDKWVTVLCKKLTMWWPWVAEGEIPLKQSKGEEISKYKELDPSDRLLLLKALCEVRADQHDAVSYIND ALKEGTQVSSFRKDALGRDGAGTSYWYDANSKGQSHRLYKETITMSRSSPKAKVKGCLPLPTINFHWETLASNLEEFSEV AEKFSSSMSTLEFNVGKKLQSDAIPVLEKLQKKKERALKQKQRQEMLLKDFQKPYVSGTTRSCRTRKPISYTFEAYDQTI KEAIQLTNKRKSPGASQDGNRGSEDKSNSKDVSSTDSDSKSDVPPLSESDDTGYKIENRGSSEEENDDIDSEMGRSEAQT SRAVSYPKGVRQSERLTGVPNHSVQENRAKQRLRQRLTRNSAMESIVIPDSEDEQGGKTDLSESS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 26 404 379 1.4E-104
PANTHER 26 404 379 1.4E-104
Coils 267 287 21 -
MobiDBLite 326 465 140 -
MobiDBLite 326 342 17 -
MobiDBLite 343 357 15 -
MobiDBLite 451 465 15 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0391200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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