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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0391200 |
| Transcript ID | LotjaGi1g1v0391200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remodeling and spacing factor 1; TAIR: AT5G25580.1 hypothetical protein; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|A0A151SQU5|A0A151SQU5_CAJCA Remodeling and spacing factor 1; Found in the gene: LotjaGi1g1v0391200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87527899..87534082) extracted from Lotus japonicus Gifu genome v1.2.
TCCAAAATGACCGCATTTTACTGCGGCAAGAAGCAAAATAGGTGATAAAACGGTGCGTTTAGCGAAGATGAGGAAGGAGG GAATGGAAGTGGAAAAGGCGCGATTCTGAAAATTAACCCTAAACACTAGAAAATTCTAACCTAAAGACCCAGAAACAAAC TTAACAGAAGCGATTCTCAAACTCTCCACTCTCCATCTCTGGTTAAAAGTGAAAAATCGATTTGAGCGGGAAACTGCTCT ATAACTTCCACTCCTCCAAGTTGCATCCCTCTCTCTCTCTCTCTCGCTTGTTCGTTCGTTCTTCCGAATCTTCTCTTCTC CCTCCGTCACCGGAAAATGCAGCACGGCGTAGAGGACGGTGGTAGCGGCGACGACCAAAACGCGCGTCCCGAGGAGAATC ATCTGGACTCCGAGATTCTCAAGCTGCGTCAACGCTGGGAACTCGCTTCTGTTCTCAATTTCTTGGACGTAAGTAACATA TCTGAACTCTCCATTGTTCGCTGCCGAGATTATATTCATCGCTTATTGTTGAAGTGGTTGGAATTGATTATGTTAGGTTA CGAAATCGTGAAGGATTTCATTGTTATTTTGGTTTTGATATAGAAAATTTTCAGCGAGGGTAACAGTGTGTTGTTTGTTG ATTCATGTTGTGATGGTGTGATTCAGGTGTTTAGTCCGATACTTGGTAAGGATTTGAAGCTGTCAGCTGAAGAAATTGAG ATCGGCCTTGTTAAGCCTGATGCTGCGCTTTCTCGTCTTCATGTTCAACTTTTGAAGGTACCTTAATCTCTTGTGCTTTT GCATGAAATTGTTTGGTTGAATACTCATACTTCATAGCACGATATTGAGTTTTTCTAGAAACCATTTTATTTGCTGCAAC GATTAGAAGTTGTTGATTGACATGTTGTTGCATGTAATATTAGTTGAGGACTTGAGGCTATAGCGGCGCAATAGCGCTAT AGCGTAGCGCCCTGGGGATTCACCACTACTCCACTATTCACCGCTATTGTCCGCTATAGAACCGCAATAGCGCTCAAAAT AGCGTTTTTTGGGCTTGCCGCTATGCTGCACTATCCGCCATTAACAACCCTGGGTTCATTACTTTCATGTGCTTTAACTT CTAATAGACTGCATAAAAAGTGGATATGAGGTTGGTGAGGTTTTTTCATTGCTTTGCATGTAATATCTGGTGTGGCAAGA AGCAATGGATGGTGAAAATTACTCATTTGATCTAATCGCTTTGTGGGTAAAATTTTGAGTTCTTTGTTCAATTTATAAGC TCTTACTAGTAATCCTAATTGAAAGACTTCGCTTTCACACCTTATTTAGATGGAACACGGATCAGTTATGAGTTGAAACT TGAAATGAACTTCTCATGAACCGTGTTATTGATTCTTAATAACTATTTCCAAAGGTGCATTATCTCATCGTCCAAAGTAC ATGAAGTTCAATGGGGATATAATTGAAGAAGTATTTTTCTTTTGCATATAAAATTACCAGGAAAGCTTAATATATGGAAG GAAAGAGCATTTAGCTATAAGGTAGAATATACTAATACTGTGATTTGGGTAACTTTCTCAAATCGAACCAACCATTCTCT CCATTCATATGGTTTGTATTTTTGTGTTGATGGCTTCCTACCTGTTATTATGTAGATGTTGGTCCATTATTTGTTTCATT TTAAATTTGAATTTCTTTTTTATTTTTGCTAGGGAATGCCACCTGTGAGTAAAACATTGGATGATTCTGATAAATGGGTG ACCGTACTCTGTAAGAAGCTGACAATGTGGTGGCCTTGGGTGAGTCACTGATTGAATGTTTTTTGAGATTGCCTTTTCTC CCCTCTTCCCATTGCTGATTGATTCTTTGCTTCAGGTTGCTGAGGGGGAGATTCCACTTAAACAATCTAAAGGGTACTGC GATGATCTGGTCATGTCCTGTTAATAATAATTGCCCACATTTAAAAATCTGATATCTTCAATGTTTGTACAGAGAGGAGA TATCCAAGTACAAGGAACTTGATCCATCAGATCGTTTACTGCTGCTAAAAGCACTTTGTGAAGTTAGAGCTGACGTATTA CTACCTCTTGTCTAATTTCTTCAATTTTTTCTTCCCTTAATATATTATAATGGTTAATTTTGCATTTTCATGACTAGATA GTTCTCTTAGATCATTGTTGGTGTTGTTCTTTTTCTATTTTAATTTTATCATCTGATATAAGTTATTTTGTTTGGGTGGT TGTTTATGCATAGCAACACGATGCAGTGTCATACATTAATGACGCCTTAAAAGAAGGAACCCAAGTTTCTTCTTTTCGCA AAGATGCCTTAGGAAGAGATGGAGCTGGTACATCCTATTGGTAATTTTTTAATATGCTCCAATCTTTTTAGGATTCTCAA GACCATAAAATCCTCATTACTCATTTGTCTATTGTAGGTATGATGCAAATTCAAAAGGTCAAAGTCACAGATTGTACAAG GAAACAATCACCATGTCAAGATCAAGCCCAAAGGCTAAGGTCAAAGGATGTTTACCACTTCCGACCATTAACTTCCATTG GGAAACACTTGCTTCCAATCTTGAGGAATTTTCAGAAGTAGCTGTAAGATCAAGTTAACTGGATTTTGTCCTTAATTTTT ACATGCAGATTTGAAACCTAAGTTAAGTCTGTTTTTGAATGCTAATCACAGGAAAAATTCTCATCCAGCATGTCAACTTT GGAATTTAATGTTGGCAAGAAGCTTCAAAGTGATGCCATTCCTGTTCTTGAAAAGCTTCAGAAGGTATGAACATTCTCTT GTTTAATGTTTGGTTGGATTCTATTCTAAGAAAAACATCATCTTTGTTAGATATTGATGTAAAGTAATATTGCTATTACA TTATGCAGAAGAAAGAAAGAGCATTGAAACAGAAGCAGAGGCAGGAAATGCTTTTGAAAGATTTTCAGAAACCTTATGTT TCTGGAACTACACGATCTTGTCGCACTCGAAAGCCTATTAGTTACACATTTGGTAAGATGTGGTATCATATGTTCCATTT TTTGGCACATTCCACTTGTCCTGCATATTAATGAAATTGTCTTTGTTATGCTTGTACTTCATTGATAATGTATAACCTGC ACTCTCAATGGAATGATGTAGAGCTTGAGCTGTTGTCAGATGTTCATTCTTTGGAATTATGTAGTATTGCTTTGTTTAAA TTTCCCCGATCAAATAAACTCAGCCTCCTTTCCTCTGGTATTATGTTTTATGTATCAGTTTCCTGTCTTAGGGAGCAATG TGCTCTGTTTACATGAAACAAGTATCTGGTTATTTCAATCCAGAATGTCAAATTATTAAAAAATCTATCCTCATGAATGC TATTCCAATGTTAGGAGTCACATTTCTAGCTTCCACGTCTAACTTATCTCCTCATTGGCTGTAAACTTCAGTATGTGTAT GTGAATTAGATCGAGTGAATTATTAATAGCTAAAGCTAAACACATTTTATAAGTAGTCACATTGCTAGATGCTTCTGATA AATTATCAATGGAAATGAAATGTTTTGATTTCTTTCTTCTTTCTCTCTCTGTAATATCTATTGGGTTTTAGGCATTAATC AAGCCTGTTTGTGAAATATTGCAGAAGCTTATGATCAAACAATTAAGGAGGCAATACAGCTAACAAAGTATGTACTATGT GGCATTGTATTTTATTAGTTCATTTTCATTCAGCGCTTTGCTTCTTTTACATCATTACTTTGTGACCTACATGTATACAC AATACACCACATTCTGAGATGAAAGTGGATGTTACTGTGAATAAAAACAGTGGTTGTTTAACAATGGTTACCCAACAGGC CAACAATGTCTTTTCTGCAGAAGTATGAAGTTAGAGCTAACATTGACACTTTTTTGTCTAATACATGTTGGTTTCTGAAT CTAATTCTGCCTTTCATAATATTTACTTCCATTTCTTTGACTAATGTTTAGCAAAAGGAAGTCTCCTGGTGCTAGCCAAG ATGGAAACAGAGGATCAGAAGATAAATCCAACTCAAAAGATGTTTCTTCCACAGACAGTGATTCAAAAAGCGATGTGCCC CCCTTATCCGAGAGTGATGATACTGGTTATAAAATTGAGAATCGCGGTAGCAGTGAGGAAGAGAATGACGACATTGATAG TGAGATGGGTAGGTCAGAAGCACAGACAAGCCGTGCAGTTTCTTATCCCAAGGGTGTTCGCCAGAGTGAGCGGTTAACTG GCGTCCCTAACCATTCAGTTCAAGAAAACAGAGCAAAGCAAAGACTGAGACAAAGACTAACCCGCAATTCTGCCATGGAA TCTATAGTTATACCGGATTCAGAGGATGAACAAGGAGGGAAGACAGATCTCTCGGAGTCTAGTTAAGTTAGGCCTAGTGT CTAATTATATTTTGGCCTAGTATCGTAGAATGCTTGTCATGAAAATTTTGGGGAATTTGAACTACATTCCTCACCCTAGG CTTATATATATTTTTTGTATTTCTCTTCTTTTCTATCTATTGTCTCTGAAGTCATGAACCGTTAACTCTTAGTGATGTGA TTCGTGAATTTTTGAAATACTTGGCATATAATATATAAAAATAGATGGCTAATGAATGCATTTTCATGTTAGTTTGGTTC CTCTTCTTTGGATCTTCCAACTTTTCTGTTGTAGTTTGTTTTCTGTTCTCTTGTACCAAAAGAGCTATTATATTTTTTTG GAATCAAGAGGAAGGCAAAAGAGCTATTATCTATTAATGATCATCCAAACAATCTCAGTTTTAAAATCACAAAATTCTTT CGTCTTAACATATTGTATAGAATTGAAAGAAAAACTAACAAAACAACAATAAAAATCTAATAAATAAGAACATCCAATCT AATATAAATGGAGAGCAATCCTTTCAAAACCAACATCCCCTAAATTAATCCAAAACCTTAGTATTTTCCATTTTACATGA TTCACATAATCAAATCATGAATCCAACAAAAAACAAGTGCATACAACATTGGAAGCACATGTTTATACAATGAAGAAGAA ACAAAAATTAACCAGTGATCATAGTTCCAGCACCTTCATCAGTTAAAATCTCCAGTAACAAAGAGTGTGGAACCCTGCCA TCAATAATGCTGGCTGTAGTAACACCTTGCGCGAGCGATCGCACGCAACAATTCACCTTCGGAATCATGCCACCACCAAC CTTGCCATCCTCCATCATCCTCTTCACCCCTTTTATATCAATCTTCTTCACCAAGCTATCCGGATCATTCCGATCCTCCA AAATCCCCGCCACATCAGTCAACAGAATCAGCTTCTCCGCCCCCAGCGCAGCCGCCAACTCTCCGGCCACCGTGTCCGCA TTGATGTTATACGGCTGCCCGGACTCATCCGCCGCCACGGACGTCACCACCGGAATGTGGTTGCTGTCAATCAGCGACCG GAGAACTGCAGGGTCCACCCTGGCCACCTCGCCGACAAACCCTAGGTCAGAGGCTTTAGGGCTGGGCCTCGCCATGAGGA GGCGGCCGTCCATTCCGGAGAGTCCAACAGCGGTGGCTCCAGCCTTGTTGATGAGCGAGACGAGGGTCTTATTAACCTTG CCTACCAGTACCATGGACACGATCTCCATGGTTTCAGCATCAGTGACGCGGAGGCCATCGCGGAAGACAGCCTGAATATT GAGGCGGCCGAGCCAGTTGTTGATCTCAGGGCCGCCGCCGTGAACCATGACAGGACGAAGGCCGACGCAGGAGAGGAGGA CGAGGTCGTTGATTACAGAAGCTTGCAGCTCAGGGGACTTCATGGCGGCGCCGCCATACTTGACGACGATGGTCTTGCCC CTGAATTTCTGGATGAAGGGGAGCGATTCCGCGAGGATGTCAACTCGGGATTGACCCGGAGACAGTGACTCGGCGGCGGT GGTGGTCGGCGGAAGGTGAACGGCGGAGCTACAGCGGCAAGCAGTTGAAGGGAAAGTGAGGTTAGTGGTTGGATTTTTGG TTTTGATTTCGGTTCTGGAAATGAATGGGAAAGGGGTGAACAAGTTTGTGAAGGTTTTGGAAATCAATGCTCCACCCAAC ATTGCGTTGTTCTGCACACACTGTAATGTGAAGTGAGTGAAGATACTGAGTGAGAGGGCAAAAGGGTTTCAGAGTTCACT GACTATAACTTGAAAATGAAATAC
CDS sequence (LotjaGi1g1v0391200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCACGGCGTAGAGGACGGTGGTAGCGGCGACGACCAAAACGCGCGTCCCGAGGAGAATCATCTGGACTCCGAGAT TCTCAAGCTGCGTCAACGCTGGGAACTCGCTTCTGTTCTCAATTTCTTGGACGTGTTTAGTCCGATACTTGGTAAGGATT TGAAGCTGTCAGCTGAAGAAATTGAGATCGGCCTTGTTAAGCCTGATGCTGCGCTTTCTCGTCTTCATGTTCAACTTTTG AAGGGAATGCCACCTGTGAGTAAAACATTGGATGATTCTGATAAATGGGTGACCGTACTCTGTAAGAAGCTGACAATGTG GTGGCCTTGGGTTGCTGAGGGGGAGATTCCACTTAAACAATCTAAAGGAGAGGAGATATCCAAGTACAAGGAACTTGATC CATCAGATCGTTTACTGCTGCTAAAAGCACTTTGTGAAGTTAGAGCTGACCAACACGATGCAGTGTCATACATTAATGAC GCCTTAAAAGAAGGAACCCAAGTTTCTTCTTTTCGCAAAGATGCCTTAGGAAGAGATGGAGCTGGTACATCCTATTGGTA TGATGCAAATTCAAAAGGTCAAAGTCACAGATTGTACAAGGAAACAATCACCATGTCAAGATCAAGCCCAAAGGCTAAGG TCAAAGGATGTTTACCACTTCCGACCATTAACTTCCATTGGGAAACACTTGCTTCCAATCTTGAGGAATTTTCAGAAGTA GCTGAAAAATTCTCATCCAGCATGTCAACTTTGGAATTTAATGTTGGCAAGAAGCTTCAAAGTGATGCCATTCCTGTTCT TGAAAAGCTTCAGAAGAAGAAAGAAAGAGCATTGAAACAGAAGCAGAGGCAGGAAATGCTTTTGAAAGATTTTCAGAAAC CTTATGTTTCTGGAACTACACGATCTTGTCGCACTCGAAAGCCTATTAGTTACACATTTGAAGCTTATGATCAAACAATT AAGGAGGCAATACAGCTAACAAACAAAAGGAAGTCTCCTGGTGCTAGCCAAGATGGAAACAGAGGATCAGAAGATAAATC CAACTCAAAAGATGTTTCTTCCACAGACAGTGATTCAAAAAGCGATGTGCCCCCCTTATCCGAGAGTGATGATACTGGTT ATAAAATTGAGAATCGCGGTAGCAGTGAGGAAGAGAATGACGACATTGATAGTGAGATGGGTAGGTCAGAAGCACAGACA AGCCGTGCAGTTTCTTATCCCAAGGGTGTTCGCCAGAGTGAGCGGTTAACTGGCGTCCCTAACCATTCAGTTCAAGAAAA CAGAGCAAAGCAAAGACTGAGACAAAGACTAACCCGCAATTCTGCCATGGAATCTATAGTTATACCGGATTCAGAGGATG AACAAGGAGGGAAGACAGATCTCTCGGAGTCTAGTTAA
Protein sequence (LotjaGi1g1v0391200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHGVEDGGSGDDQNARPEENHLDSEILKLRQRWELASVLNFLDVFSPILGKDLKLSAEEIEIGLVKPDAALSRLHVQLL KGMPPVSKTLDDSDKWVTVLCKKLTMWWPWVAEGEIPLKQSKGEEISKYKELDPSDRLLLLKALCEVRADQHDAVSYIND ALKEGTQVSSFRKDALGRDGAGTSYWYDANSKGQSHRLYKETITMSRSSPKAKVKGCLPLPTINFHWETLASNLEEFSEV AEKFSSSMSTLEFNVGKKLQSDAIPVLEKLQKKKERALKQKQRQEMLLKDFQKPYVSGTTRSCRTRKPISYTFEAYDQTI KEAIQLTNKRKSPGASQDGNRGSEDKSNSKDVSSTDSDSKSDVPPLSESDDTGYKIENRGSSEEENDDIDSEMGRSEAQT SRAVSYPKGVRQSERLTGVPNHSVQENRAKQRLRQRLTRNSAMESIVIPDSEDEQGGKTDLSESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 404 | 379 | 1.4E-104 | – | |
| PANTHER | 26 | 404 | 379 | 1.4E-104 | – | |
| Coils | 267 | 287 | 21 | - | – | |
| MobiDBLite | 326 | 465 | 140 | - | – | |
| MobiDBLite | 326 | 342 | 17 | - | – | |
| MobiDBLite | 343 | 357 | 15 | - | – | |
| MobiDBLite | 451 | 465 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0391200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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