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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0395100 |
| Transcript ID | LotjaGi1g1v0395100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MTD1; TAIR: AT5G24890.1 stress response NST1-like protein; Swiss-Prot: sp|Q68FG3|SPT2_MOUSE Protein SPT2 homolog; TrEMBL-Plants: tr|A0A0L9UG60|A0A0L9UG60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0395100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88090032..88092729) extracted from Lotus japonicus Gifu genome v1.2.
TTAATTTAATTTATTTTTTCCAACTCTACTTTTTGTTTCTATATTTTCTCCCAAGCATATCATGAATCATCCATCACATT TAAAAGGTCAGCAGTTCTCATTTTTAGTTGAACACATACATCTTTCATGAGATAATATTTTGAATTCATAACATGCACAT TTTAGTAGAATTAACCCTCTCCATTTCTAATACACAAAATTTCCTAAACCAACAAAATAAGCATATACCATATGAATCCC TTATTGCATCTTATCTCATTATGCTTCTCCTATTATTGCATCTCATTCAAAAATCCAAAAATGAAACTCCTAAATAAAGA AGCATGCACTTGGTCTGATCTAATAAAAGGAAACATATAGATAAGCTTTTCACACACACCCAAGCCTCATTCATTCAACC TAAACTGATTTTTCTGGCGTTGCCACGTCATCCTGAACGTGTCACACACTTCTCTCTCTTCATTTCATTTTTCATTTATT TTTTGTTTTTGTTTTTATTTTATTATCTATATATTATCCTCTGCTTTCTTCAACCCACTTATTTTCTCTCTCTGTTTCTC TCTGTTCTTTCTTCTTCCTCTGTTAAAACTGGTTATGGAGATGAATAATCATTGATCATCATCATCATCATCATCTACAA CAGTGAGTGATTGAGATTCTGAGATCTATAGAGTAGTCTCAGTCACTGTATTTGCCTGAGAGTTTGCAGTTTGATGACAA GCAGTTCCGTTAAGCCCAAGAGAAGAAGAAGTAGAAGAGGACAAGGGTAATCCAATCACCACCACCACAATCGCCGCCAC TTTCTGGTTCTTGGGTCTTCAATATTTTTCATTTTCTGCTGATATTTAACAAAAACAGAGAAACTTTTGATGGAGGTTTT GGTGGGTCCCACTTTCACCATCGAGTCTCCGCCGCGTGACGGCGAGGCCGACGGGAGCCTCTTCAGCGGGGACGCACAGC GGTACCGGATCTCGGGGCCGCCGAAGTTTTTCACCGGTGGGTCGCCGGAGCCGGAGAGTTCGTCGTCGATCGGAACACCG GATGACAGCGAGGAGGATGAGGAGGAGGTGCAGAGCGGGTTGAAGGGAAGAACTGGGTTGGGTTCTTTGGATTGTTTGGA GGATTCTCTTCCCATCAAGTTAGTTCTTTGTTCCCCTGTTTTGTTCTTTGTAAACATTTAATGCTTCATCATTTTTTGTT TTTGTTTGGTCTAAATTGAAATCTATCTTTTGGTAAAGACAAAAATTTCATCAATTTTCTCTTGGTCTATATCTATGTAG TGTTTTTTATTTGAACTTTGATTTTGATTTTGTTCCCTCAGATCCTATTATTCTGTGTATATATATGCTGACTCTGTTTT GTGTCTCTGTTTTTTGTGTTTTGGTAAGTTTGATTTTGATTCTAGCATCTGATATGGGTGTTGGTGTTTTGGATTCTTTG GTAAGCGATGCAGGAGGGGATTATCAAGCCATTTTGATGGAAAATCAAAGTCTTTCACGGATCTATCTCAAGTAAGCACT TTGAATGAAATCAATGAATTGAAGAAGCAAGAGAGTCCTTTCAACAAGAGAAGAAGGGTACTAATTGCATCCAAGTGGTC CAGAAAATCTTCCTTTTATTCATGGTCCAACCCACAATCCATGCCTCTTTTTCCTGTGACTGAGGATCTTGATGATGATT ATGAAGAAGAGGAAGAAGAAGAAGACGCAGAGAAGGCAAGAAAAGTTCCCTCTGCCTCATCATCCTCTTCTTCCTCTTTA GCTGAGGAAAAGAAACAAGAAGATCCAGTGCAAATGAGGCACAATAGAATACCTGAATCTTATGCTGCTCACATGAGGCT CAGACTAGGGAGCTTCAAGTCAAGAAGCTTTTCTCTAGCAGATCTGCAAGAACATGATGATGAGGAAGAAGATGATCACT ATTAAGCACATTTTGGATATCCTACAATTGATTCTGTAGCTGGCCGGAATCAATTACGAAGATAAGTTTTTGTGAATAGT TTCTAGTGTCAGAAAGCTCAGAGTTGAACAACTTCTGGCATCAGAAACCTCAAGAATTAAGCTTCAATGGAGTAAAAAGA AGCTGATTGTAAAACATGTTAAGTTGTTAACCCTAGAGTTTTGTTTTATTCATTTGTTATTAAATAAAAATTAATAGTAT TTACTCCTAAGTTACTACTCCTTCCATTCCTATTTACACCCACATATTAAGGCTAGGTTGTGATTAATTTTGTTAATCTT TAGAAAAAGTGAGGATTATTTTTCTATTTTACACTTTAAAGTATGTGTTATCTCTCCTCAATTATTGTACTGACAAGAGC ATTTGTTGTAAAAATATTATTTAATGCTCTCTTGAAATACTAAGTTGACAGTTAAATAAAAATAAAAAAAATTTCTTTAA AATAGACGGTTATATTGGAACGGATAAAGTATATTAAAGAACTTTTCTTATCTTTTATGAACTTATTAATGACTTTTGTC AAAAGCATATACCTTGCATATACTATGGATCTGAGAGACTTTTCTGTGGGTATAGTAAAGTAATGAAATTAAACTTCATA GTTCACAAAATGATAGGAGTTCTGAGCTTTATTTGTTTTGTTTCTCCTTTTCATGTTTGTTTGCTTCTTTAAAGTGGATA TGGATATTGGAGTTACACTCATTCTACAAGAGGAAAAGATAAACCAACTAAAATTGGG
CDS sequence (LotjaGi1g1v0395100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTTGGTGGGTCCCACTTTCACCATCGAGTCTCCGCCGCGTGACGGCGAGGCCGACGGGAGCCTCTTCAGCGG GGACGCACAGCGGTACCGGATCTCGGGGCCGCCGAAGTTTTTCACCGGTGGGTCGCCGGAGCCGGAGAGTTCGTCGTCGA TCGGAACACCGGATGACAGCGAGGAGGATGAGGAGGAGGTGCAGAGCGGGTTGAAGGGAAGAACTGGGTTGGGTTCTTTG GATTGTTTGGAGGATTCTCTTCCCATCAAGAGGGGATTATCAAGCCATTTTGATGGAAAATCAAAGTCTTTCACGGATCT ATCTCAAGTAAGCACTTTGAATGAAATCAATGAATTGAAGAAGCAAGAGAGTCCTTTCAACAAGAGAAGAAGGGTACTAA TTGCATCCAAGTGGTCCAGAAAATCTTCCTTTTATTCATGGTCCAACCCACAATCCATGCCTCTTTTTCCTGTGACTGAG GATCTTGATGATGATTATGAAGAAGAGGAAGAAGAAGAAGACGCAGAGAAGGCAAGAAAAGTTCCCTCTGCCTCATCATC CTCTTCTTCCTCTTTAGCTGAGGAAAAGAAACAAGAAGATCCAGTGCAAATGAGGCACAATAGAATACCTGAATCTTATG CTGCTCACATGAGGCTCAGACTAGGGAGCTTCAAGTCAAGAAGCTTTTCTCTAGCAGATCTGCAAGAACATGATGATGAG GAAGAAGATGATCACTATTAA
Protein sequence (LotjaGi1g1v0395100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVLVGPTFTIESPPRDGEADGSLFSGDAQRYRISGPPKFFTGGSPEPESSSSIGTPDDSEEDEEEVQSGLKGRTGLGSL DCLEDSLPIKRGLSSHFDGKSKSFTDLSQVSTLNEINELKKQESPFNKRRRVLIASKWSRKSSFYSWSNPQSMPLFPVTE DLDDDYEEEEEEEDAEKARKVPSASSSSSSSLAEEKKQEDPVQMRHNRIPESYAAHMRLRLGSFKSRSFSLADLQEHDDE EEDDHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 239 | 239 | 1.3E-71 | – | |
| MobiDBLite | 1 | 79 | 79 | - | – | |
| PANTHER | 1 | 239 | 239 | 1.3E-71 | – | |
| MobiDBLite | 144 | 212 | 69 | - | – | |
| Coils | 159 | 179 | 21 | - | – | |
| MobiDBLite | 160 | 174 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0395100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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