Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0399800 |
| Transcript ID | LotjaGi1g1v0399800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coiled-coil domain-containing protein 25; TAIR: AT5G11500.2 coiled-coil protein; Swiss-Prot: sp|Q3SZX8|CCD25_BOVIN Coiled-coil domain-containing protein 25; TrEMBL-Plants: tr|I3SDU2|I3SDU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0399800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88722873..88725252) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGTTCTACTTCAAAGCTCGCCCTGAAGCTGGCGATTTCACCATCTTCATGGGTCTTGACAAGTATGAGAATGAAGA GCTCATCAAATACGGTTTTCCTGAAGACATCTGGTAACCCTAATTTTGCAATTTCGCAATTTCTTCTTTGTTTCCAGAAA TTCTCTGCATCTGTTTGGTTCCTTCATGGTTTCATTTGATGATCGGTTGTTTTTGTGTGGCGGAGGTTTATGTTTTGTAT CAACTTCGATTTGTTGTCTTATTTCTGAACATTTAGAAGCCCCTTAATACAATTTTCTAGAGTTTAATTTATGGAGTAGC CATTGAATGATGTTTTGATTTGGTTTTGTGCTTTGCTTAGATTTTTTTTATTTTTTCTAAAGTTTGGGGACTTTTTGTGT GGTTGACTAATGGTGAAATCTGTCTATTGTAGGTTCCATGTTGATAAGATGTCTTCGGCCCATGTCTATGTTAGGCTGCA CAAAGGTCAGACTATCGATGACATGAGCGAAGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GTAAAAGAGTGAGACTGCTTTTGTCTCTGATTTATTAATTTAACTGATGTTTAGCACCCGATTTGATCGTAAGTTGTGTT TCACCTTGCCCCTAGCAAGGTTTCTTCAGTAGTCAGTGAGATTAATTCTTGTGCTAGGTTGCAGGATACATATGTGTAGT TATTAGTGATTTTTGTTTTCTTCCAATTCCCATTAGTATGTCTATGTACTTATCTTTCCTTTTTCTTTACTCGTGGCAGG AAATAAAGTGAACAATGTTGATGTTGTTTACACTCCTTGGTCTAATTTGAAGAAGACTGCTTCAATGGATGTTGGTCAAG TTGGTTTTTATAACTCAAAAATGGTAAATGCTTTTTCTTTCTGTTTTGTCAGTTCCTTGTCTTGCCTTTTTTTTTTCACA GTGGGTGGGTGGATGAATGCTTGAGCTTCCATTTTCAAAATCTCATCATCAGGTTCTTGTGCATTTTAGGTTCGAACTGT TAGAGTGGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACAAGACAAAGGTGGAAAGAACTCCTGATTTGAAGGGTA ACAAGTTTTCTTCTCTTTCCTTTGACATGTAATTTTCTTTGAACATTCATGTTTGAAGTTGCAAATTGCTATTTGCTGGA CGAGGAGGCAATTTGCTTATTTTTTGGTTATCATATCTACTCATTAACTCACTGTGGTGTCTCATATGCAATAGGCTTGC AAAATTGATTTGACTTATCTGATCTTCATAGAGTATATTTCTATTCTACTTATCTGATCTTGTTATCGTTTTGAATATGT GTGTTGCAGCTGAACGAGAAGCAGTTAATGCAGCTGAAAGAGCAGAGAGAAAGCAACACCTGAGAGAAAAAGTGAGAATT TTTCTTCTTATAATTAATGTTCAACCAAATACTGCTGTCATCATCCTCTCTATCTTAGCACAGTATATTATGTAGTATAG ACTCTTAATTTAACAGTATAATTTAATTTTGATGCTTTCACTTGCCTCCAACAATGCATCACACTAATTAGTTTGACAGT TGACAACTCATGTAATTGTTATATTTAAACTCATAAGATGTCGTGTTATCATATTAGTGAATCTAGGTGCATTTTTTTCT TTCTAAAACCCCATTGCATCAAAACTAAACACTGTATATTGCACAAACTGTTACTAGAGCTTTACTAGTGATCATGCTTC CAAGTGCAAAATTCTTTTAGACCCAGTGCATTAAATTTAAACAACCTATGTTGCACTAACTGTTATGATAGCTTGACTAG GGATCAGGTTTCTATGTGAATTGCTGAATGCCTGTTTTTATGTTTACCATTGTATTTTTAGCTGGCTTGTTGCATACCCT TCAAAGTCATAGTTTTGTAAATCCTCTTTTCCTTTGGCCTCATGGGCTGCTTGAGTTTTTCAGGTCATTTTGCAGCTTAT TGCCCTTTCAGATGTTTTGCTTGTGAACGTTGTTAAGAATGTGAAGATCTCATAAAATGCTTTGAGTTGTACATGTGAAA TTTAATTACTATGCTTTAGTCGGTAACTTTGCCGTAATTTCTTCTTTCTAGTTCAATTTTCTTATCACAGAAAATGCTTG AATAAATGTTAGAACAGTTTTTTTGGAGTTGTTTTCTTTATTTAACCACATGTAGAGCTCTGTGCAGAAGCGCCGTGAGG AAATGGAAAGACTTGAAAAGGAGAGACAATCAGAGCTTAGGAGCTACAAGGGCTTGATGGTTGCAGAAAATATGACATCC AACAAAGACATTGCATCTGGAAGCAAATCACTGCAGGAACTAGAGGAGGATTTTATGTAA
CDS sequence (LotjaGi1g1v0399800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCTACTTCAAAGCTCGCCCTGAAGCTGGCGATTTCACCATCTTCATGGGTCTTGACAAGTATGAGAATGAAGA GCTCATCAAATACGGTTTTCCTGAAGACATCTGGTTCCATGTTGATAAGATGTCTTCGGCCCATGTCTATGTTAGGCTGC ACAAAGGTCAGACTATCGATGACATGAGCGAAGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAA GGAAATAAAGTGAACAATGTTGATGTTGTTTACACTCCTTGGTCTAATTTGAAGAAGACTGCTTCAATGGATGTTGGTCA AGTTGGTTTTTATAACTCAAAAATGGTTCGAACTGTTAGAGTGGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACA AGACAAAGGTGGAAAGAACTCCTGATTTGAAGGCTGAACGAGAAGCAGTTAATGCAGCTGAAAGAGCAGAGAGAAAGCAA CACCTGAGAGAAAAACGCCGTGAGGAAATGGAAAGACTTGAAAAGGAGAGACAATCAGAGCTTAGGAGCTACAAGGGCTT GATGGTTGCAGAAAATATGACATCCAACAAAGACATTGCATCTGGAAGCAAATCACTGCAGGAACTAGAGGAGGATTTTA TGTAA
Protein sequence (LotjaGi1g1v0399800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFYFKARPEAGDFTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDDMSEGLLEDCAQLVKANSIQ GNKVNNVDVVYTPWSNLKKTASMDVGQVGFYNSKMVRTVRVEKRINEIVNRLNKTKVERTPDLKAEREAVNAAERAERKQ HLREKRREEMERLEKERQSELRSYKGLMVAENMTSNKDIASGSKSLQELEEDFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 214 | 214 | 3.9E-117 | – | |
| Pfam | 1 | 112 | 112 | 6.4E-43 | ||
| PANTHER | 1 | 214 | 214 | 3.9E-117 | ||
| MobiDBLite | 143 | 179 | 37 | - | – | |
| Coils | 151 | 183 | 33 | - | – | |
| MobiDBLite | 195 | 214 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0399800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…