Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0402300 |
| Transcript ID | LotjaGi1g1v0402300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tocopherol cyclase; TAIR: AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1); Swiss-Prot: sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic; TrEMBL-Plants: tr|A0A072V2G5|A0A072V2G5_MEDTR Tocopherol cyclase; Found in the gene: LotjaGi1g1v0402300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89068827..89074613) extracted from Lotus japonicus Gifu genome v1.2.
ATCCAATCTTAGCTAGTGTGTGACACACCCCTCCTTCTATATTTGTTTTTACTTTTTAGTACGAGGATTATCAATTTCAT TACCAAAATTATGCATTTTCAGATTCATCACAATACAATACAATACAATACACTGAAACTTGTCCATTTTGCTCTATCAC TGAGTCTGTCATCATCATCATTCATTCTCATCCATGGAAACCACCAAGCTCTGGAACTCTCCACACTTTCCTTTCTCCAC CACCGCCAATGCCAATGCCAATGCCAGACCCACACACCGCGTTTCTCTCAAACTTCCATTTCCATCAACACCACCACCAC CACCACCACCTTCCCGCCTCCACGTAGCTCCCATTGCGTACTCGCCAACACCACCCAATCGAGACCTTCGAACCCCTCAT AGCGGGTAGGTTTTCATTTTATACTGTTCTATTGATTTCAATTCATGAATGAATGAATTGATTGATGATTGTTGTTGTTT AGGTACCATTTTGATGGTTCAGCTCGGAAATTCTTTGAGGGTTGGTACTTCAAGGTGTCGATTCCGGAGCGGAGGCAGAG TTTCTGCTTCATGTATTCGGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTA GGTTTACTGGTGTTGGGGTTCAGATTCTTGGTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTC TGGGGGAGTAAGCATTTTTTTCACTTTCTTCTTTAAATTGGTAAAAAAATAGAACTTGTTTTTATGTGAATTGTAAAATG CCTGATCATGTTCTGTGGATTTGAACTTGTAAATGTATAGGTAGGCATGAACTCTTATTGGGGAACACTTTCGTGGCGAA ACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGTTTGTATACTAACTGCTAATAGCTGTTACCTTTAGAATC CTTTGGAATTTCAGTGTTGATTTTTTTTTATTCTTGAGGTGGTTTGGTTGTTCAGTTTCAGTTTTTGTGATGTATGTTTG TTGAGTTTTAGGTGATTCTTTTTGGATGGCTTTCATTTTTTTTCTTCTTGTTAGAGTTATGCAGTGTGATACTCTCGTTA TGTCTTACATTGGTTTTAATTTAAATGCTAGAATTGTGTAGTTTGATACTTCTCACAAGTCCCACATTACATGTTATACA TATGCTGTGAGCCTTGTAAACCTTTTCTACATACAAACATCAATAAAACTGGTCTTTCGAGCTGTGGACATAGGTACATA CACTGCGTGCCTAGCCACATTATATTGTGTGTCCTTTATCTTCTTGATTCTGGAAGATAAGAGGGTTGTTTGTAATAGGA GAAACTTTATCAGCCCTCGTGAGGGAAGAAACTAGATGACATGAAGTAAGCAGATAGGGAGTTGTTAGATTGACAGAATC TTGGAATTATTAGATTTACATTGGCTAAGAATGTCACGTTCAGCATTGTCAATGAGAAAATTACTTTAAGTTTGATGAAG GTGTTATCTAATATGTAGAAAAATCCATATGCTGCAAACAAAGTACACCTGATGCGCTGATTATTCGATGGGAGTAGATA ATTTTGTGACTGATCACATTAATGAGTTCAATACAATTCTGGTTCTGCATTATTAAATACGAAAAGCAGAGGGAGGAGCA GTTAAAAGGGTTAGAATTAGACCCAGGCCAAGGCAGATCAAAGTCCAAAGAGAACGGGAAATCCAAAAATAGGCAAGATA TGATTTACTGGAATTATGACAAAAAGGGGTCACCTTAAAAGCCAATGCAAGGAGCCAAATAAGAGTAATAAACATAAGAA GCAGAAAAGTGATGAAAGTGAAAATGTTGCAACTAATGAAACTGCAATGTATTAAATTGTAACTTTTGACAGTCTGGTTG ACTCATTGATTTTGGACTTGGTGTGTTATTCTGCACTATACCTTATTCTCATTATATCTTTGGAAAGTTTGGGAAGGTTC ACCTCCAAGTCTTATAATATCATTGTAAGAGGTGATGTTGGCATTAGTACCTGTAGTGGAACCCAATGGACATAGCACAA TGTCAGATACATTATTTCTTTACATATAAATATGATATTTGTAGGCCAGTTAGATTACATGACTGGTTATAACTTAGAGT GGGCTTCAGGAAACAAGTCTTATTCTTTGTTTCTGCTTATATATGCTTCGTATTTGTTCATTTGTGTAGGAATTTAATAA TAGAGTGCTGGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTGGAAGTTAGATT GCTTTTTAAGTATTAGATTCTCTGGTTAATTTTTTTTCTTACTTGACAGTTGACACAAATTTTAATTATAGGTCAAATTA TGTAGAAACAGTAAAGACGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGA AGTCTACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACA GGCATGTGCTAGTTGTTCGGCTATTCGCTATTCAATCTTTTATTTATATCATGGTCTTGAATCCTACATTTACTTTTATT TCTGAACTGAAACATAATAATTTTGTTTGAACAATTATTATGAATCTATCACGGCACTGACAGCTGTATACTACTAATGT ATTTTGCCTAAGTGATTGACATTTAGAGCCAGTTTGGATAAACTTCTTAATAAGCATTTATGGAGGAAGAAATTTAGAAT GATCTTACAGTAACTGAGTCAAACCCAACTTTTGCACCTTAAGTTTTCAGAAACTCCTTCATTTAACCTCCATGAGACCT GCCTCTAACTTTGTAAGGTTTTTTTTTTTCGTAAATTAAGAACCAAGTACTTATTTTAGTAAAAGAGTTCCCATAAACTA GAAGCTTTCCAAACTGGGCCTTAATGCATATTTGGAAACCCAACTTGTTTTCATGTTAAATGAGAATTGCTTCTGATTGA CGTGTAGAGCACAAATTTCTCTTTCTTGCTTCTACTTGGGAGAATTGATTTTGAATAAATGTAAAACTGATCCCAACAAG CTATTAGTCACCTGCTACCTACAAAATATTACACGTCGATAATAGTCATGCTGAAAGGATATATAATCATTTCTAGAACC ATGAGGTGAATCAGGAAGGGGGGAGTATAATGCTATTTACACTTACAATGTCAATTTTGGACTAAGATTGGATTACTAGG CTCATATTTTGGTGAAGTACTTTTATGCTTTAAGAAGTAATCACTCTTGCTTGCACCTTGCAGTATTTATGTCCTCTTTC ATTTTTCTTATATTAATATTGAATCTCAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTT ATTCAGAAAAGAACTGGGGCGGAGGATTCCCAAGAAAGTGGTTTTGGGTAAGTAATATTTTTATTCATGAAAGTATATCT TCTAAAGTTCATTAGCACATCAATTCCATGGTTTGCTATGAATCTTAAGCCGTTTCTGATTGTATGTAATCAATTGCAAA CCTTGTCTATTGAAAATTGTGGTTAAAATGTTTTATTTCTTCAGCATTATGTTTTATACTTCTAGAAAAATCAATTGTCT GTTAACAAGCTATAGACAGCAAGCACATAAGTCATGCTTCATTAGGCCTTGGAGACTGCAGTAGATGGAGTCCTTTTGTA TTGTTATATTGACATTCAATTATTCTCACCTTTGTTTGGATCAGTGTCTGTGCTTTTATATTTTTATGCATCTCAAATTG TTAATGTTTCGTACAGGTTCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTG GATTGAGGCAAATTCCTGGGATAACCGAGACCTTTGAAAATGCTGCACTGGTACCTTCATAAAGCATTTGGCTATAAATT TGATTTATTTCATAAATTTATTACACCAGGAAATAAATTTAAGACTACCTCTGAAATAAATGGTGCTAGTCATGGGAATG ACAAAAGGACCAGGACATATAACTAATTTGATTTCTCTTTTTGCCAAAATAACTGTCTCTGCTCTTGCTAGTTGTTTTCT TTGATAAAGACAAACTCTTGGGTGAGTATAAATACAGTCTTTTAATCTCTTAAAATTTGTGCATAAATTGTATTACTGAT ACTTCACGGAAACAATTGTCCGCTGCTTAAAATCATGAGTGATGAAAAGAGTGATGTTAATATTTCGTATGAAGTGTTTT AATTAGATTGGTATTTCTTCTGAAATGTTCTAATTTGTATATCTAACGGTAGATGGTGCTTTCTTTCGTTTCACGTTGTG GTTATAAAATAAAAACATAATTTATGTTCTTCTTGTAAGAATTTTAGGGGTCTATTTGCCATCTTCTGTTGTTCACTGCA TGCCATTAATCGTCCTCCTCTTGTTATTATTATTATGATTGACTTTTCTTAATTTTTACTATGTTGCAAACTGGTGCAGA TTGGAGTTCATTATGGTGGAAAATTTTATGAATTTGTGCCATGGAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGT TATTGGTTTATGTCTGCAGACAATGGCAGTTATCTGGTAATTTTATAGTTTTGAATCTCATTTGAACTTATCAATATATA AACTATGGAGTCCTATTTGTTTTTAGAAAAAGTTTTAGTTTTCATTTCCAGTTTTGACTTTTAACTACTTTTTTTCACTT TGTTTCAAATTTCCTCAACAAAACTGAAAGAGAATGAAATAAAAATAGAAATAGAACCCAAACAAATCCTAAATTTATGC TTTGTGCAACATAGTTGAACTTCTCAATGCAGGAGAAAAAATAATAATTTGATGGGACTTCTTTTGGCAAATGACATGAG TGTGTTTGTATTTACGTTCAAGTTGGTCAAAAACTCATTCACTCCAACGACACAAGAGACATGATACATTTAAACTGTCT TGTAATGTACGCTGACAGAAATCCGAACACACTATTGTGGCAGGTTGAATTAGAAGCAAAAACAGATGATCCCGGTACTC CATTGCGTGCGCCAACATCAGAAGCAGGCCTTTCACAAGCTTGTAAAGACACATGTTTCGGAATTCTTACATTGAAAATA TGGGAACGAAGATATGATGGCAGCAAGGGGAAGGTGACTTGTTATTCGCACACATAAATTGTTCTTACATTCAATGTTTA ATGGAACATGTTAATGAAATGTTTGGTAAATGGCAGATCATATTGGACGTTTCAAGTGACATGGCAGCTCTAGAAGTTGG AGGAGGTCCATGGTTCAGCACTTGGAAAGGCAAGACGACAATGCCACCGGTCATTGGCCCTGCTCTTGGATTACCCGTAG ACCTAGATGGCATTTTTAATGCGGTTCCTCTGTTTAAACCACCTGGTTTGTGATCAATTGGTTTATATCTTTCTTTCAGT TTGATTTGAAGTTTGTATAAACTCTCTTATAGCATGTTTGGTTTCACGGGTGGAATGATCCAGAATCACCTCTAGTTAGA AGCCATAAGTTTTTGTAGTTTGTAAGTAATCATATATAAATTATGTCAAATTGTGAAGCCAAACAGACATTTAGTGAAGG CAGGTATTCAGAGAAAAGTTCAATGTTTATATATAGAAAGATCAAAATGAAAAGAATATCTGTTTACAATAAGTTTTATT AATATAAAACTCTTTTTATTCCTCGGA
CDS sequence (LotjaGi1g1v0402300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCACCAAGCTCTGGAACTCTCCACACTTTCCTTTCTCCACCACCGCCAATGCCAATGCCAATGCCAGACCCAC ACACCGCGTTTCTCTCAAACTTCCATTTCCATCAACACCACCACCACCACCACCACCTTCCCGCCTCCACGTAGCTCCCA TTGCGTACTCGCCAACACCACCCAATCGAGACCTTCGAACCCCTCATAGCGGGTACCATTTTGATGGTTCAGCTCGGAAA TTCTTTGAGGGTTGGTACTTCAAGGTGTCGATTCCGGAGCGGAGGCAGAGTTTCTGCTTCATGTATTCGGTGGAGAATCC TGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTAGGTTTACTGGTGTTGGGGTTCAGATTCTTG GTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTAGGCATGAACTCTTATTGGGG AACACTTTCGTGGCGAAACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGAATTTAATAATAGAGTGCTGGA AGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCAAATTATGTAGAAACAGTAAAGA CGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGAAGTCTACTGCTGGCTGG CTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACAGGTTGGATAGAGTGGGA TGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGCGGAGGATTCCCAAGAAAGTGGTTTT GGGTTCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGCAAATT CCTGGGATAACCGAGACCTTTGAAAATGCTGCACTGATTGGAGTTCATTATGGTGGAAAATTTTATGAATTTGTGCCATG GAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGTTATTGGTTTATGTCTGCAGACAATGGCAGTTATCTGGTTGAAT TAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACATCAGAAGCAGGCCTTTCACAAGCTTGTAAAGAC ACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGATGGCAGCAAGGGGAAGATCATATTGGACGTTTC AAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAGCACTTGGAAAGGCAAGACGACAATGCCACCGGTCA TTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTAATGCGGTTCCTCTGTTTAAACCACCTGGTTTGTGA
Protein sequence (LotjaGi1g1v0402300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METTKLWNSPHFPFSTTANANANARPTHRVSLKLPFPSTPPPPPPPSRLHVAPIAYSPTPPNRDLRTPHSGYHFDGSARK FFEGWYFKVSIPERRQSFCFMYSVENPAFPNPLTPLESVQYGPRFTGVGVQILGADDNYICQYTPQSNNFWGSRHELLLG NTFVAKPNSKPPNKEVPPQEFNNRVLEGFQVTPLWNQGFICDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGW LAAFPVFEPHWQICMGGGLSTGWIEWDGERIEFENAPSYSEKNWGGGFPRKWFWVQCNVLEGEGASGEIALTAAGGLRQI PGITETFENAALIGVHYGGKFYEFVPWNGFVNWEVTPWGYWFMSADNGSYLVELEAKTDDPGTPLRAPTSEAGLSQACKD TCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGPWFSTWKGKTTMPPVIGPALGLPVDLDGIFNAVPLFKPPGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 53 | 479 | 427 | 1.8E-238 | – | |
| PANTHER | 53 | 479 | 427 | 1.8E-238 | ||
| Pfam | 79 | 437 | 359 | 5.2E-140 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Tocopherol cyclase activity | Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol). |
Expression pattern of LotjaGi1g1v0402300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…