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LotjaGi1g1v0402300.2

Overview

Field Value
Gene ID LotjaGi1g1v0402300
Transcript ID LotjaGi1g1v0402300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Tocopherol cyclase; TAIR: AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1); Swiss-Prot: sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic; TrEMBL-Plants: tr|A0A072V2G5|A0A072V2G5_MEDTR Tocopherol cyclase; Found in the gene: LotjaGi1g1v0402300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:89069121..89074355) extracted from Lotus japonicus Gifu genome v1.2.

CAATGCCAGACCCACACACCGCGTTTCTCTCAAACTTCCATTTCCATCAACACCACCACCACCACCACCACCTTCCCGCC TCCACGTAGCTCCCATTGCGTACTCGCCAACACCACCCAATCGAGACCTTCGAACCCCTCATAGCGGGTAGGTTTTCATT TTATACTGTTCTATTGATTTCAATTCATGAATGAATGAATTGATTGATGATTGTTGTTGTTTAGGTACCATTTTGATGGT TCAGCTCGGAAATTCTTTGAGGGTTGGTACTTCAAGGTGTCGATTCCGGAGCGGAGGCAGAGTTTCTGCTTCATGTATTC GGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTAGGTTTACTGGTGTTGGGG TTCAGATTCTTGGTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTAAGCATTTT TTTCACTTTCTTCTTTAAATTGGTAAAAAAATAGAACTTGTTTTTATGTGAATTGTAAAATGCCTGATCATGTTCTGTGG ATTTGAACTTGTAAATGTATAGGTAGGCATGAACTCTTATTGGGGAACACTTTCGTGGCGAAACCAAATTCAAAACCTCC AAACAAGGAGGTTCCTCCTCAGGTTTGTATACTAACTGCTAATAGCTGTTACCTTTAGAATCCTTTGGAATTTCAGTGTT GATTTTTTTTTATTCTTGAGGTGGTTTGGTTGTTCAGTTTCAGTTTTTGTGATGTATGTTTGTTGAGTTTTAGGTGATTC TTTTTGGATGGCTTTCATTTTTTTTCTTCTTGTTAGAGTTATGCAGTGTGATACTCTCGTTATGTCTTACATTGGTTTTA ATTTAAATGCTAGAATTGTGTAGTTTGATACTTCTCACAAGTCCCACATTACATGTTATACATATGCTGTGAGCCTTGTA AACCTTTTCTACATACAAACATCAATAAAACTGGTCTTTCGAGCTGTGGACATAGGTACATACACTGCGTGCCTAGCCAC ATTATATTGTGTGTCCTTTATCTTCTTGATTCTGGAAGATAAGAGGGTTGTTTGTAATAGGAGAAACTTTATCAGCCCTC GTGAGGGAAGAAACTAGATGACATGAAGTAAGCAGATAGGGAGTTGTTAGATTGACAGAATCTTGGAATTATTAGATTTA CATTGGCTAAGAATGTCACGTTCAGCATTGTCAATGAGAAAATTACTTTAAGTTTGATGAAGGTGTTATCTAATATGTAG AAAAATCCATATGCTGCAAACAAAGTACACCTGATGCGCTGATTATTCGATGGGAGTAGATAATTTTGTGACTGATCACA TTAATGAGTTCAATACAATTCTGGTTCTGCATTATTAAATACGAAAAGCAGAGGGAGGAGCAGTTAAAAGGGTTAGAATT AGACCCAGGCCAAGGCAGATCAAAGTCCAAAGAGAACGGGAAATCCAAAAATAGGCAAGATATGATTTACTGGAATTATG ACAAAAAGGGGTCACCTTAAAAGCCAATGCAAGGAGCCAAATAAGAGTAATAAACATAAGAAGCAGAAAAGTGATGAAAG TGAAAATGTTGCAACTAATGAAACTGCAATGTATTAAATTGTAACTTTTGACAGTCTGGTTGACTCATTGATTTTGGACT TGGTGTGTTATTCTGCACTATACCTTATTCTCATTATATCTTTGGAAAGTTTGGGAAGGTTCACCTCCAAGTCTTATAAT ATCATTGTAAGAGGTGATGTTGGCATTAGTACCTGTAGTGGAACCCAATGGACATAGCACAATGTCAGATACATTATTTC TTTACATATAAATATGATATTTGTAGGCCAGTTAGATTACATGACTGGTTATAACTTAGAGTGGGCTTCAGGAAACAAGT CTTATTCTTTGTTTCTGCTTATATATGCTTCGTATTTGTTCATTTGTGTAGGAATTTAATAATAGAGTGCTGGAAGGTTT TCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTGGAAGTTAGATTGCTTTTTAAGTATTAGAT TCTCTGGTTAATTTTTTTTCTTACTTGACAGTTGACACAAATTTTAATTATAGGTCAAATTATGTAGAAACAGTAAAGAC GGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGAAGTCTACTGCTGGCTGGC TTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACAGGCATGTGCTAGTTGTTC GGCTATTCGCTATTCAATCTTTTATTTATATCATGGTCTTGAATCCTACATTTACTTTTATTTCTGAACTGAAACATAAT AATTTTGTTTGAACAATTATTATGAATCTATCACGGCACTGACAGCTGTATACTACTAATGTATTTTGCCTAAGTGATTG ACATTTAGAGCCAGTTTGGATAAACTTCTTAATAAGCATTTATGGAGGAAGAAATTTAGAATGATCTTACAGTAACTGAG TCAAACCCAACTTTTGCACCTTAAGTTTTCAGAAACTCCTTCATTTAACCTCCATGAGACCTGCCTCTAACTTTGTAAGG TTTTTTTTTTTCGTAAATTAAGAACCAAGTACTTATTTTAGTAAAAGAGTTCCCATAAACTAGAAGCTTTCCAAACTGGG CCTTAATGCATATTTGGAAACCCAACTTGTTTTCATGTTAAATGAGAATTGCTTCTGATTGACGTGTAGAGCACAAATTT CTCTTTCTTGCTTCTACTTGGGAGAATTGATTTTGAATAAATGTAAAACTGATCCCAACAAGCTATTAGTCACCTGCTAC CTACAAAATATTACACGTCGATAATAGTCATGCTGAAAGGATATATAATCATTTCTAGAACCATGAGGTGAATCAGGAAG GGGGGAGTATAATGCTATTTACACTTACAATGTCAATTTTGGACTAAGATTGGATTACTAGGCTCATATTTTGGTGAAGT ACTTTTATGCTTTAAGAAGTAATCACTCTTGCTTGCACCTTGCAGTATTTATGTCCTCTTTCATTTTTCTTATATTAATA TTGAATCTCAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGG GCGGAGGATTCCCAAGAAAGTGGTTTTGGGTAAGTAATATTTTTATTCATGAAAGTATATCTTCTAAAGTTCATTAGCAC ATCAATTCCATGGTTTGCTATGAATCTTAAGCCGTTTCTGATTGTATGTAATCAATTGCAAACCTTGTCTATTGAAAATT GTGGTTAAAATGTTTTATTTCTTCAGCATTATGTTTTATACTTCTAGAAAAATCAATTGTCTGTTAACAAGCTATAGACA GCAAGCACATAAGTCATGCTTCATTAGGCCTTGGAGACTGCAGTAGATGGAGTCCTTTTGTATTGTTATATTGACATTCA ATTATTCTCACCTTTGTTTGGATCAGTGTCTGTGCTTTTATATTTTTATGCATCTCAAATTGTTAATGTTTCGTACAGGT TCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGCAAATTCCTG GGATAACCGAGACCTTTGAAAATGCTGCACTGGTACCTTCATAAAGCATTTGGCTATAAATTTGATTTATTTCATAAATT TATTACACCAGGAAATAAATTTAAGACTACCTCTGAAATAAATGGTGCTAGTCATGGGAATGACAAAAGGACCAGGACAT ATAACTAATTTGATTTCTCTTTTTGCCAAAATAACTGTCTCTGCTCTTGCTAGTTGTTTTCTTTGATAAAGACAAACTCT TGGGTGAGTATAAATACAGTCTTTTAATCTCTTAAAATTTGTGCATAAATTGTATTACTGATACTTCACGGAAACAATTG TCCGCTGCTTAAAATCATGAGTGATGAAAAGAGTGATGTTAATATTTCGTATGAAGTGTTTTAATTAGATTGGTATTTCT TCTGAAATGTTCTAATTTGTATATCTAACGGTAGATGGTGCTTTCTTTCGTTTCACGTTGTGGTTATAAAATAAAAACAT AATTTATGTTCTTCTTGTAAGAATTTTAGGGGTCTATTTGCCATCTTCTGTTGTTCACTGCATGCCATTAATCGTCCTCC TCTTGTTATTATTATTATGATTGACTTTTCTTAATTTTTACTATGTTGCAAACTGGTGCAGATTGGAGTTCATTATGGTG GAAAATTTTATGAATTTGTGCCATGGAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGTTATTGGTTTATGTCTGCA GACAATGGCAGTTATCTGGTAATTTTATAGTTTTGAATCTCATTTGAACTTATCAATATATAAACTATGGAGTCCTATTT GTTTTTAGAAAAAGTTTTAGTTTTCATTTCCAGTTTTGACTTTTAACTACTTTTTTTCACTTTGTTTCAAATTTCCTCAA CAAAACTGAAAGAGAATGAAATAAAAATAGAAATAGAACCCAAACAAATCCTAAATTTATGCTTTGTGCAACATAGTTGA ACTTCTCAATGCAGGAGAAAAAATAATAATTTGATGGGACTTCTTTTGGCAAATGACATGAGTGTGTTTGTATTTACGTT CAAGTTGGTCAAAAACTCATTCACTCCAACGACACAAGAGACATGATACATTTAAACTGTCTTGTAATGTACGCTGACAG AAATCCGAACACACTATTGTGGCAGGTTGAATTAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACAT CAGAAGCAGGCCTTTCACAAGCTTGTAAAGACACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGAT GGCAGCAAGGGGAAGGTGACTTGTTATTCGCACACATAAATTGTTCTTACATTCAATGTTTAATGGAACATGTTAATGAA ATGTTTGGTAAATGGCAGATCATATTGGACGTTTCAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAG CACTTGGAAAGGCAAGACGACAATGCCACCGGTCATTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTA ATGCGGTTCCTCTGTTTAAACCACCTGGTTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0402300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATTCGGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTAGGTTTACTGG TGTTGGGGTTCAGATTCTTGGTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTA GGCATGAACTCTTATTGGGGAACACTTTCGTGGCGAAACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGAA TTTAATAATAGAGTGCTGGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCAAA TTATGTAGAAACAGTAAAGACGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACAC AGAAGTCTACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTTGGATAGAG TGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGCGGAGGATTCCCAAGAAAGTG GTTTTGGGTTCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGC AAATTCCTGGGATAACCGAGACCTTTGAAAATGCTGCACTGATTGGAGTTCATTATGGTGGAAAATTTTATGAATTTGTG CCATGGAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGTTATTGGTTTATGTCTGCAGACAATGGCAGTTATCTGGT TGAATTAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACATCAGAAGCAGGCCTTTCACAAGCTTGTA AAGACACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGATGGCAGCAAGGGGAAGATCATATTGGAC GTTTCAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAGCACTTGGAAAGGCAAGACGACAATGCCACC GGTCATTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTAATGCGGTTCCTCTGTTTAAACCACCTGGTT TGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0402300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYSVENPAFPNPLTPLESVQYGPRFTGVGVQILGADDNYICQYTPQSNNFWGSRHELLLGNTFVAKPNSKPPNKEVPPQE FNNRVLEGFQVTPLWNQGFICDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMGGWIE WDGERIEFENAPSYSEKNWGGGFPRKWFWVQCNVLEGEGASGEIALTAAGGLRQIPGITETFENAALIGVHYGGKFYEFV PWNGFVNWEVTPWGYWFMSADNGSYLVELEAKTDDPGTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGKIILD VSSDMAALEVGGGPWFSTWKGKTTMPPVIGPALGLPVDLDGIFNAVPLFKPPGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR35309:SF2
1 374 374 1.6E-200 –
Pfam
PF14249
1 332 332 1.3E-120
IPR025893
PANTHER
PTHR35309
1 374 374 1.6E-200
IPR025893

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009976
Molecular function Tocopherol cyclase activity Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0402300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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