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LotjaGi1g1v0402900.1

Overview

Field Value
Gene ID LotjaGi1g1v0402900
Transcript ID LotjaGi1g1v0402900.1
Lotus japonicus genome version Gifu v1.2
Description Tocopherol cyclase; TAIR: AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1); Swiss-Prot: sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic; TrEMBL-Plants: tr|A0A072V2G5|A0A072V2G5_MEDTR Tocopherol cyclase; Found in the gene: LotjaGi1g1v0402900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:89180053..89185449) extracted from Lotus japonicus Gifu genome v1.2.

TATGATAAATTGAAGAACTGCTCGTCCGTGCATCGCACGGAGACGGGTTAAAATCCTAGTCACAATACAATACAATGCAC TGAAACTTGTCCATTTTGCTCTATCACTGAGTCTGTCATCATCATCATTCATTCTCATCCATGGAAACCACCAAGCTCTG GAACTCTCCACACTTTCCTTTCTCCACCACCGCCAATGCCAATGCCAATGCCAGACCCACACACCGCGTTTCTCTCAAAC TTCCATTTCCATCAACACCACCACCACCACCACCTTCCCGCCTCCACGTAGCTCCCATTGCGTACTCGCCAACACCACCC AATCGAGACCTTCGAACCCCTCATAGCGGGTAGGTTTTCATTTTATACTGTTCTATTGATTTCAATTCATGAATGAATGA ATTGATTGATGATTGTTGTTGTTTAGGTACCATTTTGATGGTTCAGCTCGGAAATTCTTTGAGGGTTGGTACTTCAAGGT GTCGATTCCGGAGCGGAGGCAGAGTTTCTGCTTCATATGTATTCGGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCC TTTGGAATTGGTTCAATATGGACCTAGGTTTACTGGTGTTGGGGCTCAGATTCTTGGTGCTGATGATAACTACATTTGCC AATACACTCCACAATCAAACAACTTCTGGGGGAGTAAGCATTTTTTTCACTTTTGATGTGAATTGTAAAATGCCTGATCA TTTTCTGTGGATTTGAACTTAAAAGTTGATTTTTTTGAATGTATAGGTAGGCATGAACTCGTATTGGGGAACACTTTCGT GGCGAAACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGTTTGTATACTAATGCTCTCTTTCAGTAACTGTT AAACTGCTAATAGCTGTTACCTTTAGAATCCTTTGGAATTTCAGTGTTGATTTTTTTTATTCTTGAGGTGGTTGGTTGTT CAGTTTCAGTTTTTGTGATGTATGTTTGTTGAGTTTTAGGTGATTCTTTTTGGATGGCTTTCATTTTTTTTCTTCTTGTT AGAGTTATGCAGTGTGATACTCTCGTTATGTCTTACATTGGTTTTAATTTAAATGCTAGAATTGTGTAGTTTGATACTTC TCACAAGTCCCACATTACATGTTATACATATGCTGTGAGCCTTGTAAACCTTTTCCACATACAAACATCAATAAAACTGG TCTTTCGAGCTGTGGACATAGGTACATACACTGCGTGCCTAGCCACATTATATTGTGTCCTCCTTCATCTTCTTGATTCT GGAAGGTGAAGATAAGAGGGTTGTTTGTAATAGGAGAACGGGAAATCCAAAAATAGGCAAGATATGATTTACTGGAATTA TGACAAAAAGGGGTCACCTTAAAAGCCAATGCAAGGAGCCAAATAAGAGTAATAAACATAAGAAGCCGAAAAGTGATGAA AGTGAAAATGTTGCAACTAATGAAACTGCAATGTATTAAATTGTAACTTTGACAGTCTGGTTGACTCATGGGTTTTGGAC ATGGTGTGTCATTCTGCACTATACCTTATTCTCATTATATCTTTGGAAAGTTTGGGAAGGTTCACCTCCAAGTCTTATAA TATCATTGTAAGAGGTGATGTTGGCATTAGTACCTGTAGTGGAACCCAATGGACATAGCACAATGTCAGATACATTATTT CTTTACATATAAATATGATATTTGTAGGCCAGTTAGATTACATGACTGGTTATAACTTAGAGTGGGCTTCAGGAAACAAG TCTTATTCTTTGTTTCTGCTTATATATGCTTCGTGTTTGTTCATTTGTGTAGGAATTTAATAATAGAGTGCTGGAAGGTT TTCAAGTCACTACCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTGGAAGTTAGATTGCTTTTTAAGTATTGGA TTCTCTGGTTAATTTTTTTTCTTACTTGACAGTTGACACAAATTTTAATTATAGGTCAAATTATGTAGAAACAGTAAAGA CGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGAAGTCTACTGCTGGCTGG CTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACAGGCATGTGCTAGTTGTT CGGCTATTCGCTATTCAATCTTTTATTTATATCATGGTCTTGAATCCTACATTTACTTTTATTTCTGAACTGAAACATAA TAATTTTGTTTGAACAATTATTATGAATCTATCACGGCACTGACAGCTGTATACTACTAATGTATTTTGCCTAAGTGATT GACATTTAGAGCCAGTTTGGATAAACTTCTTAATAAGCATTTATGGAGGAAGAAATTTAGAATGACCTTACAGTAACTGA GTCAAACCCAACTTTTGCACCTTAAGTTTTCAGAAACTCCTTCATTTAACCTCCATGAGACCTGCCTCTAACTTTGTAAG GTTTTTTTTTTTTTTTCGTAAATTAAGAACCAAGTACTTATTATAGTAAAAAAGTTCCCATAAACTAGAAGCTTTCCAAA CTGGGCCTTAATGCATATTTGGAAACCCAACTTGTTTTCATGTTAAATGAGAATTGCTTCTGATTGACGTGTAGAGCACA AATTTCTCTTTCTTGCTTCTACTTGGGAGAATTGATTTTGAATAAATGTAAAACTGATCCCAACAAGCTATTAGTCACCT GCTACCTACAAAATATTACACGTCGATAATAGTCATGCTGAAAGGATATATAATCATTTCGAGAACCATGAGGTGAATCA GGAAGGGGGGAGTATAATGCTATTTACACTTACAATGTCAATTTTGGACTAAGATTGGATTACTAGGCTCATATTTTGGT GAAGTACTTTTATGCTTTAAGAAGTAATCACTTGCTTGCACCTTGCAGTATTTATGTTCTCTTTCATTTTTCTTATATTA ATATTGAATCTCAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACT GGGGCGGAGGATTCCCAAGAAAGTGGTTTTGGGTAAGTAATATTTTTATTCATGAAAGTATATCTTCTAAAGTTCATTAG CACATCAATTCCCTAGTTTGCTATGAATCTTAAGCCGTTGCTGATTGTATGCAATCAATTGCAAACCTTGTCTATTGAAA ATTATGGTTAGAATGTTTTATTTCTTCAACATTATGTTTTATACTTCTAGAAAAATCAATTGTCTGTTAACAAGCTATAG ACAGCAAGCACATAAGTCATGCTTCATTAGGCCTTGGAGACTGCAGGAGATGGAGTCCTTTTGTATTGTTATATTGAGAT TCAATTATTCTCACCTTTGTTTGGATCAGTGCCTGTGCTTTTATATTTTTATGCATCTCAAATTGTTAATGTTTCATGCA GGTTCAATGTAATGTTTTTGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGCAAATTC CTGGGATAACCGAGACCTTCGAAAATGCTGCACTGGTACCTTCATGAAGCATTTGGCTATAAATTTGATTCATTTCATAA ATTTATTACACCAGGAAATAAATTTAAGACTACCTTTGAAATAAATGGTGCTAGTCATGGGAATGACAAAAGGACCAGGA CATATAACTAATTTGATTTCTCTTTTTGCCAAAATAACTGTTTCTGCTCTTGCTAGTTGTTCTCTTTGATAAAGACAAAC TCTTGGGTGAGGATAAATACAGTCTTTTAATATCTTAAAATTTGTGCATAAATTGTATTACTGATACTTTACGGAAACAT TTGTCCGCTGCTTAAAATCATAAGTGATGAAAAGAGTGATGTTAATATTTTGTATGAAGTGGTTTAATTAGATTGGTATT TCTTCTGAAATGTTCTAATTTGTATATCTAATGGTAGATGGTGCTTTCTTTCGTTTCACGTTGTGGTTATAAAATAAAAA AAGAATTTATGTTCTTCTTGTAAGATTTTTTGGGGTCTATTTGCCATCTTCTGTTGTTCACTGCATGCCATTAATCGTCC TCCTCTTGTTGTTATTATTATTATGATTGACTTTTCTTAATTTTTACTATGTTGCCAACTGGTGCAGATTGGAGTTCATT ATGGTGGAAAATTTTATGAATTTGTGCCATGGAATGGTTTTGTTAACTGGGAAGTCACACCTTGGGGTTATTGGTTTATG TCTGCAGACAATGGCAGTTATCTGGTAATTATATCTTTCTAATCACGTTTTGTTTTTGCTGGTGGCCAAAAGCAATGTTG CATACACACATACACACGTGTTGTGGGTGGGGCATTATAGTTTTGCATCTCATTTGAACTTATCAATATATAAACTATGG AGGCCTATTTGTTTTTAGAAAAAGTTTTAGTTTTCATTTCCAGTTTTTACTTTTAACTACTTTTTTTCACTTTGTTTCAA ATTTCCTCAACAAAACTGAAAAAAAGAAAATGGAAACAAGGTGAAATTTTTATAATTAAAATTAAGAGTATGAAATAAAA ATAGAAATAGAACCCAAACAAATCCTAAATTTATGCTTTGTGCAACATAGTTGAACTTCTCAATGCAGGAGAAAAATAAT AATTTGATGGGACTTCTTTTGGCAAATGACATGAGTGTGTTTGTATTTACGTTCAAGTTGGTCAAAAACTCATTCACTCC AACGACACAAGAGACATGACACATTTTAACTGCCTTGTAATGTACGCTGACAGAAATCCGAACACACTATTGTGGCAGGT TGAATTAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACATCAGAAGCAGGCCTTTCACAAGCTTGTA AAGACACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGATGGCAGCAAGGGGAAGGTGACTTGTTAT TCGCACACATAAATTGTTCTTACATTATGTTTAATGGAACATGTTAATGAAATGTTTGGTAAATGGCAGATCATATTGGA CGTTTCAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAGCACTTGGAAAGGCAAGACGACAATGCCAC CGGTCATTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTAATGCGGTTCCTCTGTTTAAACCACCTGGT TTGTGATCAATTGGTTTATATCTTTCTTTCAGTTTGATTTGAAGTTTGTATAAACTCTCTCTTATAGCATGTTTGGTTTC ATGGGTGGAATGATCCATAATCACCTCTAGTTAGAAGCCATAAGTTTTTGTAGTTTGTAAGTAATCATATATAAATTATG TCAACTTGTGAAGCCAAACAGCATTTAGTGAAGGCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0402900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATTCGGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCCTTTGGAATTGGTTCAATATGGACCTAGGTTTACTGG TGTTGGGGCTCAGATTCTTGGTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTA GGCATGAACTCGTATTGGGGAACACTTTCGTGGCGAAACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGAA TTTAATAATAGAGTGCTGGAAGGTTTTCAAGTCACTACCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCAAA TTATGTAGAAACAGTAAAGACGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACAC AGAAGTCTACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCA ACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGCGGAGG ATTCCCAAGAAAGTGGTTTTGGGTTCAATGTAATGTTTTTGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTG CTGGTGGATTGAGGCAAATTCCTGGGATAACCGAGACCTTCGAAAATGCTGCACTGATTGGAGTTCATTATGGTGGAAAA TTTTATGAATTTGTGCCATGGAATGGTTTTGTTAACTGGGAAGTCACACCTTGGGGTTATTGGTTTATGTCTGCAGACAA TGGCAGTTATCTGGTTGAATTAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACATCAGAAGCAGGCC TTTCACAAGCTTGTAAAGACACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGATGGCAGCAAGGGG AAGATCATATTGGACGTTTCAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAGCACTTGGAAAGGCAA GACGACAATGCCACCGGTCATTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTAATGCGGTTCCTCTGT TTAAACCACCTGGTTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0402900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYSVENPAFPNPLTPLELVQYGPRFTGVGAQILGADDNYICQYTPQSNNFWGSRHELVLGNTFVAKPNSKPPNKEVPPQE FNNRVLEGFQVTTLWNQGFICDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMGGGLS TGWIEWDGERIEFENAPSYSEKNWGGGFPRKWFWVQCNVFEGEGASGEIALTAAGGLRQIPGITETFENAALIGVHYGGK FYEFVPWNGFVNWEVTPWGYWFMSADNGSYLVELEAKTDDPGTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKG KIILDVSSDMAALEVGGGPWFSTWKGKTTMPPVIGPALGLPVDLDGIFNAVPLFKPPGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR35309:SF2
1 379 379 7.5E-207 –
Pfam
PF14249
1 337 337 4.6E-127
IPR025893
PANTHER
PTHR35309
1 379 379 7.5E-207
IPR025893
SUPERFAMILY
SSF159245
116 282 167 4.32E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009976
Molecular function Tocopherol cyclase activity Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0402900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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